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Search of human proteins with 11055992
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|11055992 serine carboxypeptidase 1 precursor [Homo sapiens]
(452 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|11055992 serine carboxypeptidase 1 precursor [Homo sapiens] 922 0.0
gi|83641876 serine carboxypeptidase vitellogenic-like [Homo sapi... 144 2e-34
gi|83641874 serine carboxypeptidase vitellogenic-like [Homo sapi... 144 2e-34
gi|119395729 cathepsin A isoform a precursor [Homo sapiens] 86 5e-17
gi|189163485 cathepsin A isoform b precursor [Homo sapiens] 86 5e-17
gi|156071465 Rho GTPase activating protein 4 [Homo sapiens] 31 2.6
gi|156627573 zinc finger protein 836 [Homo sapiens] 30 4.5
gi|170016077 ATPase type 13A1 [Homo sapiens] 30 5.9
gi|239757765 PREDICTED: similar to thioredoxin peroxidase [Homo ... 29 10.0
gi|5453549 peroxiredoxin 4 [Homo sapiens] 29 10.0
gi|119220559 phosphoribosylaminoimidazole carboxylase, phosphori... 29 10.0
gi|119220557 phosphoribosylaminoimidazole carboxylase, phosphori... 29 10.0
gi|5453539 phosphoribosylaminoimidazole carboxylase, phosphoribo... 29 10.0
gi|49574543 zinc finger protein 616 [Homo sapiens] 29 10.0
>gi|11055992 serine carboxypeptidase 1 precursor [Homo sapiens]
Length = 452
Score = 922 bits (2382), Expect = 0.0
Identities = 452/452 (100%), Positives = 452/452 (100%)
Query: 1 MELALRRSPVPRWLLLLPLLLGLNAGAVIDWPTEEGKEVWDYVTVRKDAYMFWWLYYATN 60
MELALRRSPVPRWLLLLPLLLGLNAGAVIDWPTEEGKEVWDYVTVRKDAYMFWWLYYATN
Sbjct: 1 MELALRRSPVPRWLLLLPLLLGLNAGAVIDWPTEEGKEVWDYVTVRKDAYMFWWLYYATN 60
Query: 61 SCKNFSELPLVMWLQGGPGGSSTGFGNFEEIGPLDSDLKPRKTTWLQAASLLFVDNPVGT 120
SCKNFSELPLVMWLQGGPGGSSTGFGNFEEIGPLDSDLKPRKTTWLQAASLLFVDNPVGT
Sbjct: 61 SCKNFSELPLVMWLQGGPGGSSTGFGNFEEIGPLDSDLKPRKTTWLQAASLLFVDNPVGT 120
Query: 121 GFSYVNGSGAYAKDLAMVASDMMVLLKTFFSCHKEFQTVPFYIFSESYGGKMAAGIGLEL 180
GFSYVNGSGAYAKDLAMVASDMMVLLKTFFSCHKEFQTVPFYIFSESYGGKMAAGIGLEL
Sbjct: 121 GFSYVNGSGAYAKDLAMVASDMMVLLKTFFSCHKEFQTVPFYIFSESYGGKMAAGIGLEL 180
Query: 181 YKAIQRGTIKCNFAGVALGDSWISPVDSVLSWGPYLYSMSLLEDKGLAEVSKVAEQVLNA 240
YKAIQRGTIKCNFAGVALGDSWISPVDSVLSWGPYLYSMSLLEDKGLAEVSKVAEQVLNA
Sbjct: 181 YKAIQRGTIKCNFAGVALGDSWISPVDSVLSWGPYLYSMSLLEDKGLAEVSKVAEQVLNA 240
Query: 241 VNKGLYREATELWGKAEMIIEQNTDGVNFYNILTKSTPTSTMESSLEFTQSHLVCLCQRH 300
VNKGLYREATELWGKAEMIIEQNTDGVNFYNILTKSTPTSTMESSLEFTQSHLVCLCQRH
Sbjct: 241 VNKGLYREATELWGKAEMIIEQNTDGVNFYNILTKSTPTSTMESSLEFTQSHLVCLCQRH 300
Query: 301 VRHLQRDALSQLMNGPIRKKLKIIPEDQSWGGQATNVFVNMEEDFMKPVISIVDELLEAG 360
VRHLQRDALSQLMNGPIRKKLKIIPEDQSWGGQATNVFVNMEEDFMKPVISIVDELLEAG
Sbjct: 301 VRHLQRDALSQLMNGPIRKKLKIIPEDQSWGGQATNVFVNMEEDFMKPVISIVDELLEAG 360
Query: 361 INVTVYNGQLDLIVDTMGQEAWVRKLKWPELPKFSQLKWKALYSDPKSLETSAFVKSYKN 420
INVTVYNGQLDLIVDTMGQEAWVRKLKWPELPKFSQLKWKALYSDPKSLETSAFVKSYKN
Sbjct: 361 INVTVYNGQLDLIVDTMGQEAWVRKLKWPELPKFSQLKWKALYSDPKSLETSAFVKSYKN 420
Query: 421 LAFYWILKAGHMVPSDQGDMALKMMRLVTQQE 452
LAFYWILKAGHMVPSDQGDMALKMMRLVTQQE
Sbjct: 421 LAFYWILKAGHMVPSDQGDMALKMMRLVTQQE 452
>gi|83641876 serine carboxypeptidase vitellogenic-like [Homo
sapiens]
Length = 476
Score = 144 bits (363), Expect = 2e-34
Identities = 123/441 (27%), Positives = 192/441 (43%), Gaps = 52/441 (11%)
Query: 22 GLNAGAVIDWPTEEGKEVWDYVTVRK--DAYMFWWLYYATNSCKNFSELPLVMWLQGGPG 79
G V +P K ++TV K ++ +F+W + A + + P+V+WLQGGPG
Sbjct: 57 GRELSLVGPFPGLNMKSYAGFLTVNKTYNSNLFFWFFPAQIQPE---DAPVVLWLQGGPG 113
Query: 80 GSSTGFGNFEEIGPL----DSDLKPRKTTWLQAASLLFVDNPVGTGFSYVNGSGAYAKDL 135
GSS FG F E GP + L+ R W S+L++DNPVGTGFS+ + + YA +
Sbjct: 114 GSSM-FGLFVEHGPYVVTSNMTLRDRDFPWTTTLSMLYIDNPVGTGFSFTDDTHGYAVNE 172
Query: 136 AMVASDMMVLLKTFFSCHKEFQTVPFYIFSESYGGKMAAGIGLELYKAIQRGTIKCNFAG 195
VA D+ L FF E++ FY+ ESY GK I ++ +K N G
Sbjct: 173 DDVARDLYSALIQFFQIFPEYKNNDFYVTGESYAGKYVPAIAHLIHSLNPVREVKINLNG 232
Query: 196 VALGDSWISPVDSVLSWGPYLYSMSLLEDKGLAEVSKVAEQVLNAVNKGLYREATELWGK 255
+A+GD + P + + +LY + LL++K K + + + K + EA E+ K
Sbjct: 233 IAIGDGYSDPESIIGGYAEFLYQIGLLDEKQKKYFQKQCHECIEHIRKQNWFEAFEILDK 292
Query: 256 -------AEMIIEQNTDGV-NFYNILTKSTPTSTMESSLEFTQSHLVCLCQRHVRHLQRD 307
++ QN G N+YN L + P E L + + L VR
Sbjct: 293 LLDGDLTSDPSYFQNVTGCSNYYNFLRCTEP----EDQLYYVK----FLSLPEVRQAIHV 344
Query: 308 ALSQLMNGPIRKKLKIIPEDQSWGGQATNVFVNMEEDFMKPVISIVDELLEAGINVTVYN 367
+G I +K + ED ++ V + E++ V +YN
Sbjct: 345 GNQTFNDGTIVEKY-------------------LREDTVQSVKPWLTEIMN-NYKVLIYN 384
Query: 368 GQLDLIVDTMGQEAWVRKLKW---PELPKFSQLKWKALYSDPKSLETSAFVKSYKNLAFY 424
GQLD+IV E + + W E K + WK SD E + +++ +
Sbjct: 385 GQLDIIVAAALTERSLMGMDWKGSQEYKKAEKKVWKIFKSDS---EVAGYIRQAGDFHQV 441
Query: 425 WILKAGHMVPSDQGDMALKMM 445
I GH++P DQ A M+
Sbjct: 442 IIRGGGHILPYDQPLRAFDMI 462
>gi|83641874 serine carboxypeptidase vitellogenic-like [Homo
sapiens]
Length = 476
Score = 144 bits (363), Expect = 2e-34
Identities = 123/441 (27%), Positives = 192/441 (43%), Gaps = 52/441 (11%)
Query: 22 GLNAGAVIDWPTEEGKEVWDYVTVRK--DAYMFWWLYYATNSCKNFSELPLVMWLQGGPG 79
G V +P K ++TV K ++ +F+W + A + + P+V+WLQGGPG
Sbjct: 57 GRELSLVGPFPGLNMKSYAGFLTVNKTYNSNLFFWFFPAQIQPE---DAPVVLWLQGGPG 113
Query: 80 GSSTGFGNFEEIGPL----DSDLKPRKTTWLQAASLLFVDNPVGTGFSYVNGSGAYAKDL 135
GSS FG F E GP + L+ R W S+L++DNPVGTGFS+ + + YA +
Sbjct: 114 GSSM-FGLFVEHGPYVVTSNMTLRDRDFPWTTTLSMLYIDNPVGTGFSFTDDTHGYAVNE 172
Query: 136 AMVASDMMVLLKTFFSCHKEFQTVPFYIFSESYGGKMAAGIGLELYKAIQRGTIKCNFAG 195
VA D+ L FF E++ FY+ ESY GK I ++ +K N G
Sbjct: 173 DDVARDLYSALIQFFQIFPEYKNNDFYVTGESYAGKYVPAIAHLIHSLNPVREVKINLNG 232
Query: 196 VALGDSWISPVDSVLSWGPYLYSMSLLEDKGLAEVSKVAEQVLNAVNKGLYREATELWGK 255
+A+GD + P + + +LY + LL++K K + + + K + EA E+ K
Sbjct: 233 IAIGDGYSDPESIIGGYAEFLYQIGLLDEKQKKYFQKQCHECIEHIRKQNWFEAFEILDK 292
Query: 256 -------AEMIIEQNTDGV-NFYNILTKSTPTSTMESSLEFTQSHLVCLCQRHVRHLQRD 307
++ QN G N+YN L + P E L + + L VR
Sbjct: 293 LLDGDLTSDPSYFQNVTGCSNYYNFLRCTEP----EDQLYYVK----FLSLPEVRQAIHV 344
Query: 308 ALSQLMNGPIRKKLKIIPEDQSWGGQATNVFVNMEEDFMKPVISIVDELLEAGINVTVYN 367
+G I +K + ED ++ V + E++ V +YN
Sbjct: 345 GNQTFNDGTIVEKY-------------------LREDTVQSVKPWLTEIMN-NYKVLIYN 384
Query: 368 GQLDLIVDTMGQEAWVRKLKW---PELPKFSQLKWKALYSDPKSLETSAFVKSYKNLAFY 424
GQLD+IV E + + W E K + WK SD E + +++ +
Sbjct: 385 GQLDIIVAAALTERSLMGMDWKGSQEYKKAEKKVWKIFKSDS---EVAGYIRQAGDFHQV 441
Query: 425 WILKAGHMVPSDQGDMALKMM 445
I GH++P DQ A M+
Sbjct: 442 IIRGGGHILPYDQPLRAFDMI 462
>gi|119395729 cathepsin A isoform a precursor [Homo sapiens]
Length = 498
Score = 86.3 bits (212), Expect = 5e-17
Identities = 116/495 (23%), Positives = 194/495 (39%), Gaps = 81/495 (16%)
Query: 5 LRRSPVPRWLLLLPLLLGLNAGAVIDWPTE--------------------EGKEVWDYVT 44
+R +P P +LLLL LLL ++ W + ++ Y+
Sbjct: 20 IRAAPPPLFLLLLLLLL------LVSWASRGEAAPDQDEIQRLPGLAKQPSFRQYSGYLK 73
Query: 45 VRKDAYMFWWLYYATNSCKNFSELPLVMWLQGGPGGSSTGFGNFEEIGPL-----DSDLK 99
++ +W S K+ P+V+WL GGPG SS G E GP L+
Sbjct: 74 GSGSKHLHYWF---VESQKDPENSPVVLWLNGGPGCSSLD-GLLTEHGPFLVQPDGVTLE 129
Query: 100 PRKTTWLQAASLLFVDNPVGTGFSYVNGSGAYAKDLAMVASDMMVLLKTFFSCHKEFQTV 159
+W A++L++++P G GFSY + YA + VA L+ FF E++
Sbjct: 130 YNPYSWNLIANVLYLESPAGVGFSY-SDDKFYATNDTEVAQSNFEALQDFFRLFPEYKNN 188
Query: 160 PFYIFSESYGGKMAAGIGLELYKAIQRGTIKCNFAGVALGDSWISPVDSVLSWGPYLYSM 219
++ ESY AGI + + N G+A+G+ S + S + Y
Sbjct: 189 KLFLTGESY-----AGIYIPTLAVLVMQDPSMNLQGLAVGNGLSSYEQNDNSLVYFAYYH 243
Query: 220 SLLEDK--GLAEVSKVAEQVLNAVNKGLYREATELWGKAEMIIEQNTDGVNFYNILTKST 277
LL ++ + ++ N + T L A ++ G+N YN+
Sbjct: 244 GLLGNRLWSSLQTHCCSQNKCNFYDNKDLECVTNLQEVARIV---GNSGLNIYNLYAPC- 299
Query: 278 PTSTMESSLEFTQSHLVC---------LCQRHVRH----------------LQRDALSQL 312
+ S + + +V L + + H A S
Sbjct: 300 -AGGVPSHFRYEKDTVVVQDLGNIFTRLPLKRMWHQALLRSGDKVRMDPPCTNTTAASTY 358
Query: 313 MNGP-IRKKLKIIPEDQSWGGQATNVFVNME-EDFMKPVISIVDELLEA-GINVTVYNGQ 369
+N P +RK L I + W N VN++ + + S +LL + + +YNG
Sbjct: 359 LNNPYVRKALNIPEQLPQW--DMCNFLVNLQYRRLYRSMNSQYLKLLSSQKYQILLYNGD 416
Query: 370 LDLIVDTMGQEAWVRKLKWPELPKFSQLKWKALYSDPKSLETSAFVKSYKNLAFYWILKA 429
+D+ + MG E +V L + + + W Y D + + FVK + ++AF I A
Sbjct: 417 VDMACNFMGDEWFVDSLN--QKMEVQRRPWLVKYGD-SGEQIAGFVKEFSHIAFLTIKGA 473
Query: 430 GHMVPSDQGDMALKM 444
GHMVP+D+ A M
Sbjct: 474 GHMVPTDKPLAAFTM 488
>gi|189163485 cathepsin A isoform b precursor [Homo sapiens]
Length = 480
Score = 86.3 bits (212), Expect = 5e-17
Identities = 116/495 (23%), Positives = 194/495 (39%), Gaps = 81/495 (16%)
Query: 5 LRRSPVPRWLLLLPLLLGLNAGAVIDWPTE--------------------EGKEVWDYVT 44
+R +P P +LLLL LLL ++ W + ++ Y+
Sbjct: 2 IRAAPPPLFLLLLLLLL------LVSWASRGEAAPDQDEIQRLPGLAKQPSFRQYSGYLK 55
Query: 45 VRKDAYMFWWLYYATNSCKNFSELPLVMWLQGGPGGSSTGFGNFEEIGPL-----DSDLK 99
++ +W S K+ P+V+WL GGPG SS G E GP L+
Sbjct: 56 GSGSKHLHYWF---VESQKDPENSPVVLWLNGGPGCSSLD-GLLTEHGPFLVQPDGVTLE 111
Query: 100 PRKTTWLQAASLLFVDNPVGTGFSYVNGSGAYAKDLAMVASDMMVLLKTFFSCHKEFQTV 159
+W A++L++++P G GFSY + YA + VA L+ FF E++
Sbjct: 112 YNPYSWNLIANVLYLESPAGVGFSY-SDDKFYATNDTEVAQSNFEALQDFFRLFPEYKNN 170
Query: 160 PFYIFSESYGGKMAAGIGLELYKAIQRGTIKCNFAGVALGDSWISPVDSVLSWGPYLYSM 219
++ ESY AGI + + N G+A+G+ S + S + Y
Sbjct: 171 KLFLTGESY-----AGIYIPTLAVLVMQDPSMNLQGLAVGNGLSSYEQNDNSLVYFAYYH 225
Query: 220 SLLEDK--GLAEVSKVAEQVLNAVNKGLYREATELWGKAEMIIEQNTDGVNFYNILTKST 277
LL ++ + ++ N + T L A ++ G+N YN+
Sbjct: 226 GLLGNRLWSSLQTHCCSQNKCNFYDNKDLECVTNLQEVARIV---GNSGLNIYNLYAPC- 281
Query: 278 PTSTMESSLEFTQSHLVC---------LCQRHVRH----------------LQRDALSQL 312
+ S + + +V L + + H A S
Sbjct: 282 -AGGVPSHFRYEKDTVVVQDLGNIFTRLPLKRMWHQALLRSGDKVRMDPPCTNTTAASTY 340
Query: 313 MNGP-IRKKLKIIPEDQSWGGQATNVFVNME-EDFMKPVISIVDELLEA-GINVTVYNGQ 369
+N P +RK L I + W N VN++ + + S +LL + + +YNG
Sbjct: 341 LNNPYVRKALNIPEQLPQW--DMCNFLVNLQYRRLYRSMNSQYLKLLSSQKYQILLYNGD 398
Query: 370 LDLIVDTMGQEAWVRKLKWPELPKFSQLKWKALYSDPKSLETSAFVKSYKNLAFYWILKA 429
+D+ + MG E +V L + + + W Y D + + FVK + ++AF I A
Sbjct: 399 VDMACNFMGDEWFVDSLN--QKMEVQRRPWLVKYGD-SGEQIAGFVKEFSHIAFLTIKGA 455
Query: 430 GHMVPSDQGDMALKM 444
GHMVP+D+ A M
Sbjct: 456 GHMVPTDKPLAAFTM 470
>gi|156071465 Rho GTPase activating protein 4 [Homo sapiens]
Length = 946
Score = 30.8 bits (68), Expect = 2.6
Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 11/101 (10%)
Query: 292 HLVCLCQRHVRHLQRD--ALSQLMNGPIRKKLKIIPEDQSWGGQATNVFVNMEEDFMKPV 349
H + +H R R+ ALS+++ GP+ ++L I ED G+ ++E+ +
Sbjct: 101 HCWAVLLQHTRQQSRESAALSEVLAGPLAQRLSHIAEDV---GRLVKKSRDLEQQLQDEL 157
Query: 350 ISIVDELLEAGINVTVYNGQLDLIVDTMGQEAWVRKLKWPE 390
+ +V EL A Y+ ++++ EA +R+ + E
Sbjct: 158 LEVVSELQTAKKTYQAYH------MESVNAEAKLREAERQE 192
>gi|156627573 zinc finger protein 836 [Homo sapiens]
Length = 936
Score = 30.0 bits (66), Expect = 4.5
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 393 KFSQLKWKALYSDPKSLETSAFVKSYKNLAFYWIL 427
+FSQ +WK+L K+L +++Y+NL F IL
Sbjct: 16 EFSQEEWKSLDPVQKALYWDVMLENYRNLVFLGIL 50
>gi|170016077 ATPase type 13A1 [Homo sapiens]
Length = 1204
Score = 29.6 bits (65), Expect = 5.9
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 106 LQAASLLFVDNPVGTGFSYVNGSGAYAKDLAMVASDMM-------VLLKTFFSCHKEFQT 158
L+ L V PVG FSY + + +D + A++ +++ F KE T
Sbjct: 184 LEKKQFLPVAFPVGNAFSYYQSNRGFQEDSEIRAAEKKFGSNKAEMVVPDFSELFKERAT 243
Query: 159 VPFYIF 164
PF++F
Sbjct: 244 APFFVF 249
>gi|239757765 PREDICTED: similar to thioredoxin peroxidase [Homo
sapiens]
Length = 233
Score = 28.9 bits (63), Expect = 10.0
Identities = 18/25 (72%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 12 RWLLLLPLLLGL-NAGAVIDWPTEE 35
R LLLLPLLL L AGAV W TEE
Sbjct: 18 RRLLLLPLLLFLLPAGAVQGWETEE 42
>gi|5453549 peroxiredoxin 4 [Homo sapiens]
Length = 271
Score = 28.9 bits (63), Expect = 10.0
Identities = 18/25 (72%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 12 RWLLLLPLLLGL-NAGAVIDWPTEE 35
R LLLLPLLL L AGAV W TEE
Sbjct: 18 RRLLLLPLLLFLLPAGAVQGWETEE 42
>gi|119220559 phosphoribosylaminoimidazole carboxylase,
phosphoribosylaminoimidazole succinocarboxamide
synthetase isoform 1 [Homo sapiens]
Length = 432
Score = 28.9 bits (63), Expect = 10.0
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 337 VFVNMEEDFMKPVISIVDELLEAGINVTVYNGQLDLIVDTMGQEAWVRKLKWPELPKFSQ 396
+F +E+ ++ ++VD +E G++VT + ++ D + ++W WP + SQ
Sbjct: 179 IFEILEKSWLPQNCTLVDMKIEFGVDVTT---KEIVLADVIDNDSW---RLWPSGDR-SQ 231
Query: 397 LKWKALYSDPKSLETSAFVKSYKNLAFYWI 426
K K Y D K + KN F W+
Sbjct: 232 QKDKQSYRDLKEVTPEGLQMVKKN--FEWV 259
>gi|119220557 phosphoribosylaminoimidazole carboxylase,
phosphoribosylaminoimidazole succinocarboxamide
synthetase isoform 2 [Homo sapiens]
Length = 425
Score = 28.9 bits (63), Expect = 10.0
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 337 VFVNMEEDFMKPVISIVDELLEAGINVTVYNGQLDLIVDTMGQEAWVRKLKWPELPKFSQ 396
+F +E+ ++ ++VD +E G++VT + ++ D + ++W WP + SQ
Sbjct: 172 IFEILEKSWLPQNCTLVDMKIEFGVDVTT---KEIVLADVIDNDSW---RLWPSGDR-SQ 224
Query: 397 LKWKALYSDPKSLETSAFVKSYKNLAFYWI 426
K K Y D K + KN F W+
Sbjct: 225 QKDKQSYRDLKEVTPEGLQMVKKN--FEWV 252
>gi|5453539 phosphoribosylaminoimidazole carboxylase,
phosphoribosylaminoimidazole succinocarboxamide
synthetase isoform 2 [Homo sapiens]
Length = 425
Score = 28.9 bits (63), Expect = 10.0
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 337 VFVNMEEDFMKPVISIVDELLEAGINVTVYNGQLDLIVDTMGQEAWVRKLKWPELPKFSQ 396
+F +E+ ++ ++VD +E G++VT + ++ D + ++W WP + SQ
Sbjct: 172 IFEILEKSWLPQNCTLVDMKIEFGVDVTT---KEIVLADVIDNDSW---RLWPSGDR-SQ 224
Query: 397 LKWKALYSDPKSLETSAFVKSYKNLAFYWI 426
K K Y D K + KN F W+
Sbjct: 225 QKDKQSYRDLKEVTPEGLQMVKKN--FEWV 252
>gi|49574543 zinc finger protein 616 [Homo sapiens]
Length = 781
Score = 28.9 bits (63), Expect = 10.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 393 KFSQLKWKALYSDPKSLETSAFVKSYKNLAFYWI 426
+FSQ +WK L K+L +++Y+NL F I
Sbjct: 15 EFSQEEWKCLEPVQKALYKDVMLENYRNLVFLGI 48
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,971,336
Number of Sequences: 37866
Number of extensions: 742583
Number of successful extensions: 1842
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1820
Number of HSP's gapped (non-prelim): 21
length of query: 452
length of database: 18,247,518
effective HSP length: 106
effective length of query: 346
effective length of database: 14,233,722
effective search space: 4924867812
effective search space used: 4924867812
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.