Search of human proteins with 156151417

Search of human proteins with 156151417

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|156151417 phosphatidylcholine transfer protein isoform 2
[Homo sapiens]
         (142 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|156151417 phosphatidylcholine transfer protein isoform 2 [Hom...   300   3e-82
gi|156151415 phosphatidylcholine transfer protein isoform 1 [Hom...   300   3e-82
gi|151301035 START domain containing 7 [Homo sapiens]                  85   2e-17
gi|116812600 START domain containing 10 [Homo sapiens]                 63   7e-11
gi|38505213 YTH domain containing 2 [Homo sapiens]                     30   0.67 
gi|4505621 prostatic binding protein [Homo sapiens]                    27   5.7  
gi|110618244 retinoblastoma binding protein 2 isoform 1 [Homo sa...    27   5.7  
gi|110618242 retinoblastoma binding protein 2 isoform 2 [Homo sa...    27   5.7  
gi|47519420 reticulon 4 interacting protein 1 precursor [Homo sa...    27   5.7  
gi|194018497 FYVE, RhoGEF and PH domain containing 5 [Homo sapiens]    27   7.4  
gi|20357588 TBP-associated factor 1 isoform 2 [Homo sapiens]           26   9.7  
gi|20357585 TBP-associated factor 1 isoform 1 [Homo sapiens]           26   9.7  

>gi|156151417 phosphatidylcholine transfer protein isoform 2 [Homo
           sapiens]
          Length = 142

 Score =  300 bits (768), Expect = 3e-82
 Identities = 142/142 (100%), Positives = 142/142 (100%)

Query: 1   MDSDYRKQWDQYVKELYEQECNGETVVYWEVKYPFPMSNRDYVYLRQRRDLDMEGRKIHV 60
           MDSDYRKQWDQYVKELYEQECNGETVVYWEVKYPFPMSNRDYVYLRQRRDLDMEGRKIHV
Sbjct: 1   MDSDYRKQWDQYVKELYEQECNGETVVYWEVKYPFPMSNRDYVYLRQRRDLDMEGRKIHV 60

Query: 61  ILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGQIPSWLINWAA 120
           ILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGQIPSWLINWAA
Sbjct: 61  ILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGQIPSWLINWAA 120

Query: 121 KNGVPNFLKDMARACQNYLKKT 142
           KNGVPNFLKDMARACQNYLKKT
Sbjct: 121 KNGVPNFLKDMARACQNYLKKT 142


>gi|156151415 phosphatidylcholine transfer protein isoform 1 [Homo
           sapiens]
          Length = 214

 Score =  300 bits (768), Expect = 3e-82
 Identities = 142/142 (100%), Positives = 142/142 (100%)

Query: 1   MDSDYRKQWDQYVKELYEQECNGETVVYWEVKYPFPMSNRDYVYLRQRRDLDMEGRKIHV 60
           MDSDYRKQWDQYVKELYEQECNGETVVYWEVKYPFPMSNRDYVYLRQRRDLDMEGRKIHV
Sbjct: 73  MDSDYRKQWDQYVKELYEQECNGETVVYWEVKYPFPMSNRDYVYLRQRRDLDMEGRKIHV 132

Query: 61  ILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGQIPSWLINWAA 120
           ILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGQIPSWLINWAA
Sbjct: 133 ILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGQIPSWLINWAA 192

Query: 121 KNGVPNFLKDMARACQNYLKKT 142
           KNGVPNFLKDMARACQNYLKKT
Sbjct: 193 KNGVPNFLKDMARACQNYLKKT 214


>gi|151301035 START domain containing 7 [Homo sapiens]
          Length = 370

 Score = 84.7 bits (208), Expect = 2e-17
 Identities = 45/140 (32%), Positives = 79/140 (56%), Gaps = 8/140 (5%)

Query: 1   MDSDYRKQWDQYVKELYEQE---CNGETVVYWEVKYPFPMSNRDYVYLRQRRDLDMEGRK 57
           +D++YRK+WD  V +L   E    +G  V++W   +P+PM +RDYVY+R R  +D E   
Sbjct: 184 LDTEYRKKWDALVIKLEVIERDVVSGSEVLHWVTHFPYPMYSRDYVYVR-RYSVDQENNM 242

Query: 58  IHVILARSTSMPQLGERSGVIRVKQYKQSLAI---ESDGKKGSKVFMYYFDNPGGQIPSW 114
           + V+++R+   P + E    +RV+ Y+  + I   +S  + G    + Y DNP    P +
Sbjct: 243 M-VLVSRAVEHPSVPESPEFVRVRSYESQMVIRPHKSFDENGFDYLLTYSDNPQTVFPRY 301

Query: 115 LINWAAKNGVPNFLKDMARA 134
            ++W   +G+P+FL+ +  A
Sbjct: 302 CVSWMVSSGMPDFLEKLHMA 321


>gi|116812600 START domain containing 10 [Homo sapiens]
          Length = 291

 Score = 63.2 bits (152), Expect = 7e-11
 Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 6/139 (4%)

Query: 2   DSDYRKQWDQYVKELYE--QECNGETVVYWEVKYPFPMSNRDYVYLRQRRDLDMEGRKIH 59
           D +YRK+WD  V E ++  +      V Y+  + P P+ NRD + LR    +  +    +
Sbjct: 88  DIEYRKKWDSNVIETFDIARLTVNADVGYYSWRCPKPLKNRDVITLRSWLPMGAD----Y 143

Query: 60  VILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGQIPSWLINWA 119
           +I+  S   P+   R  ++R    +    I+S G K   +      +P G +P W++N +
Sbjct: 144 IIMNYSVKHPKYPPRKDLVRAVSIQTGYLIQSTGPKSCVITYLAQVDPKGSLPKWVVNKS 203

Query: 120 AKNGVPNFLKDMARACQNY 138
           ++   P  +K M +AC  Y
Sbjct: 204 SQFLAPKAMKKMYKACLKY 222


>gi|38505213 YTH domain containing 2 [Homo sapiens]
          Length = 1430

 Score = 30.0 bits (66), Expect = 0.67
 Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 16/107 (14%)

Query: 35  FPMSNRDYVYLRQRRD------LDMEGRKIHVILAR-STSMPQLGERSGVIRVKQYKQSL 87
           FP++N++   L  + +      ++ E R++     R +  +PQ+  + G      ++QSL
Sbjct: 134 FPVTNKERTELLPKTERGNVFAVEAENREMSKTSGRLNNGIPQIPVKRGESEFDSFRQSL 193

Query: 88  AIESDGK------KGSKVFMYYFDNPGG---QIPSWLINWAAKNGVP 125
            +    +      K +KV +   +   G   QIP +L++   KNG+P
Sbjct: 194 PVFEKQEEIVKIIKENKVVLIVGETGSGKTTQIPQFLLDDCFKNGIP 240


>gi|4505621 prostatic binding protein [Homo sapiens]
          Length = 187

 Score = 26.9 bits (58), Expect = 5.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)

Query: 5   YRKQWDQYVKELYEQ 19
           Y+ +WD YV +LYEQ
Sbjct: 169 YQAEWDDYVPKLYEQ 183


>gi|110618244 retinoblastoma binding protein 2 isoform 1 [Homo
            sapiens]
          Length = 1690

 Score = 26.9 bits (58), Expect = 5.7
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 29   WEVKYPFPMSNRDYVYLRQRRDLDMEGRKIHVILARSTSMPQLGERSGVIR 79
            W  K     S  +Y YL Q   L  +GR I V   R  ++PQ+  +    R
Sbjct: 1004 WTAKVEAIQSGSNYAYLEQLESLSAKGRPIPV---RLEALPQVESQVAAAR 1051


>gi|110618242 retinoblastoma binding protein 2 isoform 2 [Homo
            sapiens]
          Length = 1641

 Score = 26.9 bits (58), Expect = 5.7
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 29   WEVKYPFPMSNRDYVYLRQRRDLDMEGRKIHVILARSTSMPQLGERSGVIR 79
            W  K     S  +Y YL Q   L  +GR I V   R  ++PQ+  +    R
Sbjct: 1004 WTAKVEAIQSGSNYAYLEQLESLSAKGRPIPV---RLEALPQVESQVAAAR 1051


>gi|47519420 reticulon 4 interacting protein 1 precursor [Homo
           sapiens]
          Length = 396

 Score = 26.9 bits (58), Expect = 5.7
 Identities = 23/82 (28%), Positives = 30/82 (36%), Gaps = 11/82 (13%)

Query: 53  MEGRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGQIP 112
           M+    HV    S    +L  + G   V  YK     E    K  K F +  DN GG   
Sbjct: 225 MKAWDAHVTAVCSQDASELVRKLGADDVIDYKSGSVEEQ--LKSLKPFDFILDNVGGSTE 282

Query: 113 SWLINWAAKNGVPNFLKDMARA 134
           +W          P+FLK  + A
Sbjct: 283 TW---------APDFLKKWSGA 295


>gi|194018497 FYVE, RhoGEF and PH domain containing 5 [Homo sapiens]
          Length = 1462

 Score = 26.6 bits (57), Expect = 7.4
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 7/72 (9%)

Query: 24  ETVVYWEVKYPFPMSNRDYVYLRQRRDLDMEGRKIHVILARSTSMPQLGERSGVIRVKQY 83
           E  ++ +V      S+ +  Y    R L+++ R +       ++ PQL  R+G +R  + 
Sbjct: 666 ENKLHVDVNVSSSRSSSESSYHGPSRILEVDRRSL-------SNSPQLKSRTGKLRASES 718

Query: 84  KQSLAIESDGKK 95
             SL    DGK+
Sbjct: 719 PSSLIFYRDGKR 730


>gi|20357588 TBP-associated factor 1 isoform 2 [Homo sapiens]
          Length = 1872

 Score = 26.2 bits (56), Expect = 9.7
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 30  EVKYPFPMSNRDYVYLRQRRDLDMEGRKI--HVILARSTSMPQLGERSGVIRVKQY 83
           EVK P+ +SN +Y Y +Q+      G  I  H I A     P      G I+++Q+
Sbjct: 560 EVKDPWNLSNDEYYYPKQQGLRGTFGGNIIQHSIPAVELRQPFFPTHMGPIKLRQF 615


>gi|20357585 TBP-associated factor 1 isoform 1 [Homo sapiens]
          Length = 1893

 Score = 26.2 bits (56), Expect = 9.7
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 30  EVKYPFPMSNRDYVYLRQRRDLDMEGRKI--HVILARSTSMPQLGERSGVIRVKQY 83
           EVK P+ +SN +Y Y +Q+      G  I  H I A     P      G I+++Q+
Sbjct: 581 EVKDPWNLSNDEYYYPKQQGLRGTFGGNIIQHSIPAVELRQPFFPTHMGPIKLRQF 636


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.135    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,785,647
Number of Sequences: 37866
Number of extensions: 237370
Number of successful extensions: 403
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 392
Number of HSP's gapped (non-prelim): 15
length of query: 142
length of database: 18,247,518
effective HSP length: 92
effective length of query: 50
effective length of database: 14,763,846
effective search space: 738192300
effective search space used: 738192300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.