Search of human proteins with 156151369

Search of human proteins with 156151369

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|156151369 NADH dehydrogenase (ubiquinone) 1 alpha
subcomplex, 13 [Homo sapiens]
         (227 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|156151369 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex,...   465   e-131
gi|4758088 galactose-3-O-sulfotransferase 1 [Homo sapiens]             31   0.99 
gi|115430237 spectrin, beta, non-erythrocytic 4 isoform sigma1 [...    29   2.9  
gi|112421134 hypothetical protein LOC23742 [Homo sapiens]              29   3.8  
gi|22749217 coiled-coil domain containing 63 [Homo sapiens]            29   3.8  
gi|88758603 protein interacting with C kinase 1 [Homo sapiens]         28   8.4  
gi|88758600 protein interacting with C kinase 1 [Homo sapiens]         28   8.4  
gi|7110697 protein interacting with C kinase 1 [Homo sapiens]          28   8.4  
gi|14277677 protocadherin gamma subfamily C, 3 isoform 2 precurs...    28   8.4  
gi|14277675 protocadherin gamma subfamily C, 3 isoform 1 precurs...    28   8.4  
gi|14917111 adaptor-related protein complex 4, mu 1 subunit [Hom...    28   8.4  

>gi|156151369 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13
           [Homo sapiens]
          Length = 227

 Score =  465 bits (1197), Expect = e-131
 Identities = 227/227 (100%), Positives = 227/227 (100%)

Query: 1   MQEPRRVTPCLGKRGVKTPQLQPGSAFLPRVRRQSFPARSDSYTTVRDFLAVPRTISSAS 60
           MQEPRRVTPCLGKRGVKTPQLQPGSAFLPRVRRQSFPARSDSYTTVRDFLAVPRTISSAS
Sbjct: 1   MQEPRRVTPCLGKRGVKTPQLQPGSAFLPRVRRQSFPARSDSYTTVRDFLAVPRTISSAS 60

Query: 61  ATLIMAVAVSHFRPGPEVWDTASMAASKVKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLA 120
           ATLIMAVAVSHFRPGPEVWDTASMAASKVKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLA
Sbjct: 61  ATLIMAVAVSHFRPGPEVWDTASMAASKVKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLA 120

Query: 121 IGIGTLIYGHWSIMKWNRERRRLQIEDFEARIALLPLLQAETDRRTLQMLRENLEEEAII 180
           IGIGTLIYGHWSIMKWNRERRRLQIEDFEARIALLPLLQAETDRRTLQMLRENLEEEAII
Sbjct: 121 IGIGTLIYGHWSIMKWNRERRRLQIEDFEARIALLPLLQAETDRRTLQMLRENLEEEAII 180

Query: 181 MKDVPDWKVGESVFHTTRWVPPLIGELYGLRTTEEALHASHGFMWYT 227
           MKDVPDWKVGESVFHTTRWVPPLIGELYGLRTTEEALHASHGFMWYT
Sbjct: 181 MKDVPDWKVGESVFHTTRWVPPLIGELYGLRTTEEALHASHGFMWYT 227


>gi|4758088 galactose-3-O-sulfotransferase 1 [Homo sapiens]
          Length = 423

 Score = 30.8 bits (68), Expect = 0.99
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 6/58 (10%)

Query: 161 ETDRRT-LQMLRENLEEEAIIMKDVPDWKVGESVFHTTRW-----VPPLIGELYGLRT 212
           E +RR  L +L+E  +E  +++KD+  W++ + ++          VP L GELYG  T
Sbjct: 241 EVERRFHLVLLQEYFDESLVLLKDLLCWELEDVLYFKLNARRDSPVPRLSGELYGRAT 298


>gi|115430237 spectrin, beta, non-erythrocytic 4 isoform sigma1 [Homo
            sapiens]
          Length = 2564

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 41/171 (23%), Positives = 67/171 (39%), Gaps = 23/171 (13%)

Query: 13   KRGVKTPQLQPGSAFLPRVRRQSFPARSDSYTTVRDFLAVPRTISSASATLIMAVAVSHF 72
            ++ +K  +LQP    LP +  +  PA            A+P     A+ T     A    
Sbjct: 2180 RQELKPERLQPRIDRLPEIPGRVEPA------------ALPAAPEDAAETPATPAAAEQV 2227

Query: 73   RPGPEVWDTASMAASKVKQDMPPPGGYGPIDY-----KRNLPRRGLSGYSMLAIGIGTLI 127
            RP PE  ++A  A    ++  P       +D      +R  P R  S     A    +L 
Sbjct: 2228 RPRPERQESADRAEELPRRRRPE--RQESVDQSEEAARRRRPERQESAEHEAA---HSLT 2282

Query: 128  YGHWSIMKWNRERRRLQIEDFEARIALLPLL-QAETDRRTLQMLRENLEEE 177
             G +  M+  RERR  ++E  E+    +P+       + TL  + E L+E+
Sbjct: 2283 LGRYEQMERRRERRERRLERQESSEQEMPIRGDLVKGKATLADIVEQLQEK 2333


>gi|112421134 hypothetical protein LOC23742 [Homo sapiens]
          Length = 1156

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 21  LQPGSAFLPRVRRQSFPARSDSYTTVRDFLAVPRTISSASATLI-MAVAVSHFRPGPEVW 79
           L PG+   P+      P +  S  +  DFL++P  +   ++TL+  A A S  +P  +  
Sbjct: 764 LNPGATPQPKFGAPDGPQQKTSLPSAHDFLSLPIMVPPDTSTLVSSASAASLSKPAIDTS 823

Query: 80  DTASMAASK 88
           D  +   SK
Sbjct: 824 DMNTTPPSK 832


>gi|22749217 coiled-coil domain containing 63 [Homo sapiens]
          Length = 563

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 15/37 (40%), Positives = 22/37 (59%)

Query: 146 EDFEARIALLPLLQAETDRRTLQMLRENLEEEAIIMK 182
           ED+EA I  L +L AE D + LQM ++   ++ I  K
Sbjct: 104 EDYEALIKSLKVLLAELDEKILQMEKKIANQKQIFAK 140


>gi|88758603 protein interacting with C kinase 1 [Homo sapiens]
          Length = 415

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 40  SDSYTTVRDFLAVPRTISSASATLIMAVAVSHFRPGPEVWDTASMAASKVKQDMPPPGGY 99
           +D Y  +RD    P  +  A  TL   +    F  G E  +    AA +  +D    G  
Sbjct: 346 NDCYAVLRDADVFPIEVDLAHTTLAYGLNQEEFTDGEEEEEEEDTAAGEPSRD--TRGAA 403

Query: 100 GPID 103
           GP+D
Sbjct: 404 GPLD 407


>gi|88758600 protein interacting with C kinase 1 [Homo sapiens]
          Length = 415

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 40  SDSYTTVRDFLAVPRTISSASATLIMAVAVSHFRPGPEVWDTASMAASKVKQDMPPPGGY 99
           +D Y  +RD    P  +  A  TL   +    F  G E  +    AA +  +D    G  
Sbjct: 346 NDCYAVLRDADVFPIEVDLAHTTLAYGLNQEEFTDGEEEEEEEDTAAGEPSRD--TRGAA 403

Query: 100 GPID 103
           GP+D
Sbjct: 404 GPLD 407


>gi|7110697 protein interacting with C kinase 1 [Homo sapiens]
          Length = 415

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 40  SDSYTTVRDFLAVPRTISSASATLIMAVAVSHFRPGPEVWDTASMAASKVKQDMPPPGGY 99
           +D Y  +RD    P  +  A  TL   +    F  G E  +    AA +  +D    G  
Sbjct: 346 NDCYAVLRDADVFPIEVDLAHTTLAYGLNQEEFTDGEEEEEEEDTAAGEPSRD--TRGAA 403

Query: 100 GPID 103
           GP+D
Sbjct: 404 GPLD 407


>gi|14277677 protocadherin gamma subfamily C, 3 isoform 2 precursor
           [Homo sapiens]
          Length = 863

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 8/72 (11%)

Query: 76  PEVWDTASMAASKVKQDMPP-----PGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLIYG- 129
           P +  TA++  S V +D P      P G  P + K+NL    L    ++++G    ++G 
Sbjct: 654 PSLSTTATLTVS-VTEDSPEARAEFPSGSAPREQKKNLTFYLLLSLILVSVGFVVTVFGV 712

Query: 130 -HWSIMKWNRER 140
             + + KW + R
Sbjct: 713 IIFKVYKWKQSR 724


>gi|14277675 protocadherin gamma subfamily C, 3 isoform 1 precursor
           [Homo sapiens]
          Length = 934

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 8/72 (11%)

Query: 76  PEVWDTASMAASKVKQDMPP-----PGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLIYG- 129
           P +  TA++  S V +D P      P G  P + K+NL    L    ++++G    ++G 
Sbjct: 654 PSLSTTATLTVS-VTEDSPEARAEFPSGSAPREQKKNLTFYLLLSLILVSVGFVVTVFGV 712

Query: 130 -HWSIMKWNRER 140
             + + KW + R
Sbjct: 713 IIFKVYKWKQSR 724


>gi|14917111 adaptor-related protein complex 4, mu 1 subunit [Homo
           sapiens]
          Length = 453

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 29/112 (25%), Positives = 40/112 (35%), Gaps = 19/112 (16%)

Query: 46  VRDFLAVPRTISSASATLIMAVAVSHFRPGPEVWDT-----ASMAASKVKQDMP-PPG-- 97
           VR  L +PR + S S  L      +    G   WD       S  +   + D+P PPG  
Sbjct: 330 VRLHLPLPRGVVSLSQELSSPEQKAELAEGALRWDLPRVQGGSQLSGLFQMDVPGPPGPP 389

Query: 98  -----------GYGPIDYKRNLPRRGLSGYSMLAIGIGTLIYGHWSIMKWNR 138
                      G GP      LPR   SG  +  + +     G+ +  KW R
Sbjct: 390 SHGLSTSASPLGLGPASLSFELPRHTCSGLQVRFLRLAFRPCGNANPHKWVR 441


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.136    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,464,328
Number of Sequences: 37866
Number of extensions: 408590
Number of successful extensions: 955
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 951
Number of HSP's gapped (non-prelim): 11
length of query: 227
length of database: 18,247,518
effective HSP length: 99
effective length of query: 128
effective length of database: 14,498,784
effective search space: 1855844352
effective search space used: 1855844352
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.