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Search of human proteins with 154816172
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|154816172 transmembrane protein 170B [Homo sapiens]
(132 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|154816172 transmembrane protein 170B [Homo sapiens] 259 4e-70
gi|21687072 transmembrane protein 170A [Homo sapiens] 117 3e-27
gi|189217888 carbohydrate (N-acetylgalactosamine 4-0) sulfotrans... 29 1.2
gi|189217886 carbohydrate (N-acetylgalactosamine 4-0) sulfotrans... 29 1.2
gi|20127609 carbohydrate (N-acetylgalactosamine 4-0) sulfotransf... 29 1.2
gi|4502415 Burkitt lymphoma receptor 1 isoform 1 [Homo sapiens] 28 1.6
gi|14589869 Burkitt lymphoma receptor 1 isoform 2 [Homo sapiens] 28 1.6
gi|4505241 Mpv17 protein [Homo sapiens] 28 2.7
gi|83921602 solute carrier family 38, member 10 isoform a [Homo ... 27 6.1
gi|20070376 solute carrier family 38, member 10 isoform b [Homo ... 27 6.1
gi|170784865 CAS1 domain containing 1 [Homo sapiens] 27 6.1
gi|6679189 transmembrane emp24 domain containing 3 [Homo sapiens] 27 6.1
gi|56549147 dudulin 2 isoform b [Homo sapiens] 26 8.0
gi|56549145 dudulin 2 isoform a [Homo sapiens] 26 8.0
gi|59853425 dudulin 2 isoform b [Homo sapiens] 26 8.0
>gi|154816172 transmembrane protein 170B [Homo sapiens]
Length = 132
Score = 259 bits (662), Expect = 4e-70
Identities = 132/132 (100%), Positives = 132/132 (100%)
Query: 1 MKAEGGDHSMINLSVQQVLSLWAHGTVLRNLTEMWYWIFLWALFSSLFVHGAAGVLMFVM 60
MKAEGGDHSMINLSVQQVLSLWAHGTVLRNLTEMWYWIFLWALFSSLFVHGAAGVLMFVM
Sbjct: 1 MKAEGGDHSMINLSVQQVLSLWAHGTVLRNLTEMWYWIFLWALFSSLFVHGAAGVLMFVM 60
Query: 61 LQRHRQGRVISVIAVSIGFLASVTGAMITSAAVAGIYRVAGKNMAPLEALVWGVGQTVLT 120
LQRHRQGRVISVIAVSIGFLASVTGAMITSAAVAGIYRVAGKNMAPLEALVWGVGQTVLT
Sbjct: 61 LQRHRQGRVISVIAVSIGFLASVTGAMITSAAVAGIYRVAGKNMAPLEALVWGVGQTVLT 120
Query: 121 LIISFSRILATL 132
LIISFSRILATL
Sbjct: 121 LIISFSRILATL 132
>gi|21687072 transmembrane protein 170A [Homo sapiens]
Length = 144
Score = 117 bits (293), Expect = 3e-27
Identities = 66/142 (46%), Positives = 86/142 (60%), Gaps = 12/142 (8%)
Query: 2 KAEGGDHSMINLSVQQVLSLWA-----HGTVLRNLT------EMWYWIFLWALFSSLFVH 50
+ GG L +QQ+LSL +GT+ N T EMWY +FLWAL SSLF H
Sbjct: 4 EGSGGSGGSAGL-LQQILSLKVVPRVGNGTLCPNSTSLCSFPEMWYGVFLWALVSSLFFH 62
Query: 51 GAAGVLMFVMLQRHRQGRVISVIAVSIGFLASVTGAMITSAAVAGIYRVAGKNMAPLEAL 110
AG+L L+ H+ GR +SV + +G + +T ++TSAA+AG+YR AGK M P EAL
Sbjct: 63 VPAGLLALFTLRHHKYGRFMSVSILLMGIVGPITAGILTSAAIAGVYRAAGKEMIPFEAL 122
Query: 111 VWGVGQTVLTLIISFSRILATL 132
G GQT L++SF RILATL
Sbjct: 123 TLGTGQTFCVLVVSFLRILATL 144
>gi|189217888 carbohydrate (N-acetylgalactosamine 4-0)
sulfotransferase 8 [Homo sapiens]
Length = 424
Score = 28.9 bits (63), Expect = 1.2
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 40 LWALFSSLFVHGAAGVLMFVMLQ 62
L +FSS+ + GAAG+L+F+ LQ
Sbjct: 10 LACMFSSILLFGAAGLLLFISLQ 32
>gi|189217886 carbohydrate (N-acetylgalactosamine 4-0)
sulfotransferase 8 [Homo sapiens]
Length = 424
Score = 28.9 bits (63), Expect = 1.2
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 40 LWALFSSLFVHGAAGVLMFVMLQ 62
L +FSS+ + GAAG+L+F+ LQ
Sbjct: 10 LACMFSSILLFGAAGLLLFISLQ 32
>gi|20127609 carbohydrate (N-acetylgalactosamine 4-0)
sulfotransferase 8 [Homo sapiens]
Length = 424
Score = 28.9 bits (63), Expect = 1.2
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 40 LWALFSSLFVHGAAGVLMFVMLQ 62
L +FSS+ + GAAG+L+F+ LQ
Sbjct: 10 LACMFSSILLFGAAGLLLFISLQ 32
>gi|4502415 Burkitt lymphoma receptor 1 isoform 1 [Homo sapiens]
Length = 372
Score = 28.5 bits (62), Expect = 1.6
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 15/93 (16%)
Query: 38 IFLWALFSSLFVHGAAG-VLMFVMLQRHRQGRVISVIAVSIGFLASVTGAMITSAAVAGI 96
+F+ +S +F+ G G VL+ V+L+RHRQ R S T + AVA +
Sbjct: 52 VFVPVAYSLIFLLGVIGNVLVLVILERHRQTR-------------SSTETFLFHLAVADL 98
Query: 97 YRVAGKNMAPLEALV-WGVGQTVLTLIISFSRI 128
V A E V W +G + +I+ ++
Sbjct: 99 LLVFILPFAVAEGSVGWVLGTFLCKTVIALHKV 131
>gi|14589869 Burkitt lymphoma receptor 1 isoform 2 [Homo sapiens]
Length = 327
Score = 28.5 bits (62), Expect = 1.6
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 15/93 (16%)
Query: 38 IFLWALFSSLFVHGAAG-VLMFVMLQRHRQGRVISVIAVSIGFLASVTGAMITSAAVAGI 96
+F+ +S +F+ G G VL+ V+L+RHRQ R S T + AVA +
Sbjct: 7 VFVPVAYSLIFLLGVIGNVLVLVILERHRQTR-------------SSTETFLFHLAVADL 53
Query: 97 YRVAGKNMAPLEALV-WGVGQTVLTLIISFSRI 128
V A E V W +G + +I+ ++
Sbjct: 54 LLVFILPFAVAEGSVGWVLGTFLCKTVIALHKV 86
>gi|4505241 Mpv17 protein [Homo sapiens]
Length = 176
Score = 27.7 bits (60), Expect = 2.7
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 61 LQRHRQGRVISVIAVSIGFLASVTG 85
LQ H++GR ++++++ GF+ V G
Sbjct: 43 LQEHQRGRTLTMVSLGCGFVGPVVG 67
>gi|83921602 solute carrier family 38, member 10 isoform a [Homo
sapiens]
Length = 1119
Score = 26.6 bits (57), Expect = 6.1
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 67 GRVISVIAVSIGFLASVTGAMITSAAVAGIYRVAGKNMAPLEALVW-GVGQTVLTLIISF 125
G +I + +G + G++I A IY+ KN + ++W G+G V++ + +
Sbjct: 336 GILIPNVETILGLTGATMGSLICFICPALIYKKIHKNALSSQVVLWVGLGVLVVSTVTTL 395
Query: 126 S 126
S
Sbjct: 396 S 396
>gi|20070376 solute carrier family 38, member 10 isoform b [Homo
sapiens]
Length = 780
Score = 26.6 bits (57), Expect = 6.1
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 67 GRVISVIAVSIGFLASVTGAMITSAAVAGIYRVAGKNMAPLEALVW-GVGQTVLTLIISF 125
G +I + +G + G++I A IY+ KN + ++W G+G V++ + +
Sbjct: 336 GILIPNVETILGLTGATMGSLICFICPALIYKKIHKNALSSQVVLWVGLGVLVVSTVTTL 395
Query: 126 S 126
S
Sbjct: 396 S 396
>gi|170784865 CAS1 domain containing 1 [Homo sapiens]
Length = 797
Score = 26.6 bits (57), Expect = 6.1
Identities = 11/50 (22%), Positives = 22/50 (44%)
Query: 16 QQVLSLWAHGTVLRNLTEMWYWIFLWALFSSLFVHGAAGVLMFVMLQRHR 65
+++ SLW ++ W F W L + HG +++ LQ+ +
Sbjct: 575 EKIFSLWPLSKCFELKGNVYEWWFRWRLDRYVVFHGMLFAFIYLALQKRQ 624
>gi|6679189 transmembrane emp24 domain containing 3 [Homo sapiens]
Length = 217
Score = 26.6 bits (57), Expect = 6.1
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 112 WGVGQTVLTLIISFSRIL 129
W VG+T+ ++SFS++L
Sbjct: 182 WSVGETIALFVVSFSQVL 199
>gi|56549147 dudulin 2 isoform b [Homo sapiens]
Length = 488
Score = 26.2 bits (56), Expect = 8.0
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 8 HSMINLSVQQVLSLWAHGTVLRNLTEMWYWIFLWALFSSLFVHGAAGVLMFVMLQRHRQG 67
+ ++NL+V+QVL+ +H V + M ++ L L +L V +
Sbjct: 331 YDLVNLAVKQVLANKSHLWVEEEVWRMEIYLSLGVL--ALGTLSLLAVTSLPSIANSLNW 388
Query: 68 RVISVIAVSIGFLASVTGAMIT 89
R S + S+GF+A V + T
Sbjct: 389 REFSFVQSSLGFVALVLSTLHT 410
>gi|56549145 dudulin 2 isoform a [Homo sapiens]
Length = 498
Score = 26.2 bits (56), Expect = 8.0
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 8 HSMINLSVQQVLSLWAHGTVLRNLTEMWYWIFLWALFSSLFVHGAAGVLMFVMLQRHRQG 67
+ ++NL+V+QVL+ +H V + M ++ L L +L V +
Sbjct: 341 YDLVNLAVKQVLANKSHLWVEEEVWRMEIYLSLGVL--ALGTLSLLAVTSLPSIANSLNW 398
Query: 68 RVISVIAVSIGFLASVTGAMIT 89
R S + S+GF+A V + T
Sbjct: 399 REFSFVQSSLGFVALVLSTLHT 420
>gi|59853425 dudulin 2 isoform b [Homo sapiens]
Length = 488
Score = 26.2 bits (56), Expect = 8.0
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 8 HSMINLSVQQVLSLWAHGTVLRNLTEMWYWIFLWALFSSLFVHGAAGVLMFVMLQRHRQG 67
+ ++NL+V+QVL+ +H V + M ++ L L +L V +
Sbjct: 331 YDLVNLAVKQVLANKSHLWVEEEVWRMEIYLSLGVL--ALGTLSLLAVTSLPSIANSLNW 388
Query: 68 RVISVIAVSIGFLASVTGAMIT 89
R S + S+GF+A V + T
Sbjct: 389 REFSFVQSSLGFVALVLSTLHT 410
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.328 0.136 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,730,914
Number of Sequences: 37866
Number of extensions: 108815
Number of successful extensions: 344
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 336
Number of HSP's gapped (non-prelim): 15
length of query: 132
length of database: 18,247,518
effective HSP length: 91
effective length of query: 41
effective length of database: 14,801,712
effective search space: 606870192
effective search space used: 606870192
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.