Search of human proteins with 154800483

Search of human proteins with 154800483

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|154800483 centromere protein N isoform 2 [Homo sapiens]
         (339 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|154800483 centromere protein N isoform 2 [Homo sapiens]            679   0.0  
gi|154800485 centromere protein N isoform 1 [Homo sapiens]            624   e-179
gi|8922097 centromere protein N isoform 3 [Homo sapiens]              362   e-100
gi|24415404 MDN1, midasin homolog [Homo sapiens]                       30   2.4  
gi|154350241 brefeldin A-inhibited guanine nucleotide-exchange p...    30   3.1  
gi|62241003 cardiomyopathy associated 5 [Homo sapiens]                 30   4.0  
gi|110349721 titin isoform novex-3 [Homo sapiens]                      29   5.3  
gi|14251215 Kruppel-like factor 5 [Homo sapiens]                       29   5.3  
gi|205360947 microtubule associated monoxygenase, calponin and L...    29   5.3  
gi|226530313 microtubule associated monoxygenase, calponin and L...    29   5.3  
gi|33186901 hypothetical protein LOC359845 [Homo sapiens]              29   6.9  
gi|239755296 PREDICTED: similar to hCG1644292 [Homo sapiens]           28   9.0  
gi|239749791 PREDICTED: similar to hCG1644292 [Homo sapiens]           28   9.0  

>gi|154800483 centromere protein N isoform 2 [Homo sapiens]
          Length = 339

 Score =  679 bits (1751), Expect = 0.0
 Identities = 339/339 (100%), Positives = 339/339 (100%)

Query: 1   MDETVAEFIKRTILKIPMNELTTILKAWDFLSENQLQTVNFRQRKESVVQHLIHLCEEKR 60
           MDETVAEFIKRTILKIPMNELTTILKAWDFLSENQLQTVNFRQRKESVVQHLIHLCEEKR
Sbjct: 1   MDETVAEFIKRTILKIPMNELTTILKAWDFLSENQLQTVNFRQRKESVVQHLIHLCEEKR 60

Query: 61  ASISDAALLDIIYMQFHQHQKVWDVFQMSKGPGEDVDLFDMKQFKNSFKKILQRALKNVT 120
           ASISDAALLDIIYMQFHQHQKVWDVFQMSKGPGEDVDLFDMKQFKNSFKKILQRALKNVT
Sbjct: 61  ASISDAALLDIIYMQFHQHQKVWDVFQMSKGPGEDVDLFDMKQFKNSFKKILQRALKNVT 120

Query: 121 VSFRETEENAVWIRIAWGTQYTKPNQYKPTYVVYYSQTPYAFTSSSMLRRNTPLLGQALT 180
           VSFRETEENAVWIRIAWGTQYTKPNQYKPTYVVYYSQTPYAFTSSSMLRRNTPLLGQALT
Sbjct: 121 VSFRETEENAVWIRIAWGTQYTKPNQYKPTYVVYYSQTPYAFTSSSMLRRNTPLLGQALT 180

Query: 181 IASKHHQIVKMDLRSRYLDSLKAIVFKQYNQTFETHNSTTPLQERSLGLDINMDSRIIHE 240
           IASKHHQIVKMDLRSRYLDSLKAIVFKQYNQTFETHNSTTPLQERSLGLDINMDSRIIHE
Sbjct: 181 IASKHHQIVKMDLRSRYLDSLKAIVFKQYNQTFETHNSTTPLQERSLGLDINMDSRIIHE 240

Query: 241 NIVEKERVQRITQETFGDYPQPQLEFAQYKLETKFKSGLNGSILAEREEPLRCLIKFSSP 300
           NIVEKERVQRITQETFGDYPQPQLEFAQYKLETKFKSGLNGSILAEREEPLRCLIKFSSP
Sbjct: 241 NIVEKERVQRITQETFGDYPQPQLEFAQYKLETKFKSGLNGSILAEREEPLRCLIKFSSP 300

Query: 301 HLLEALKSLAPAGIADAPLSPLLTCIPNKRMNYFKIRDK 339
           HLLEALKSLAPAGIADAPLSPLLTCIPNKRMNYFKIRDK
Sbjct: 301 HLLEALKSLAPAGIADAPLSPLLTCIPNKRMNYFKIRDK 339


>gi|154800485 centromere protein N isoform 1 [Homo sapiens]
          Length = 353

 Score =  624 bits (1609), Expect = e-179
 Identities = 312/314 (99%), Positives = 313/314 (99%)

Query: 1   MDETVAEFIKRTILKIPMNELTTILKAWDFLSENQLQTVNFRQRKESVVQHLIHLCEEKR 60
           MDETVAEFIKRTILKIPMNELTTILKAWDFLSENQLQTVNFRQRKESVVQHLIHLCEEKR
Sbjct: 1   MDETVAEFIKRTILKIPMNELTTILKAWDFLSENQLQTVNFRQRKESVVQHLIHLCEEKR 60

Query: 61  ASISDAALLDIIYMQFHQHQKVWDVFQMSKGPGEDVDLFDMKQFKNSFKKILQRALKNVT 120
           ASISDAALLDIIYMQFHQHQKVWDVFQMSKGPGEDVDLFDMKQFKNSFKKILQRALKNVT
Sbjct: 61  ASISDAALLDIIYMQFHQHQKVWDVFQMSKGPGEDVDLFDMKQFKNSFKKILQRALKNVT 120

Query: 121 VSFRETEENAVWIRIAWGTQYTKPNQYKPTYVVYYSQTPYAFTSSSMLRRNTPLLGQALT 180
           VSFRETEENAVWIRIAWGTQYTKPNQYKPTYVVYYSQTPYAFTSSSMLRRNTPLLGQALT
Sbjct: 121 VSFRETEENAVWIRIAWGTQYTKPNQYKPTYVVYYSQTPYAFTSSSMLRRNTPLLGQALT 180

Query: 181 IASKHHQIVKMDLRSRYLDSLKAIVFKQYNQTFETHNSTTPLQERSLGLDINMDSRIIHE 240
           IASKHHQIVKMDLRSRYLDSLKAIVFKQYNQTFETHNSTTPLQERSLGLDINMDSRIIHE
Sbjct: 181 IASKHHQIVKMDLRSRYLDSLKAIVFKQYNQTFETHNSTTPLQERSLGLDINMDSRIIHE 240

Query: 241 NIVEKERVQRITQETFGDYPQPQLEFAQYKLETKFKSGLNGSILAEREEPLRCLIKFSSP 300
           NIVEKERVQRITQETFGDYPQPQLEFAQYKLETKFKSGLNGSILAEREEPLRCLIKFSSP
Sbjct: 241 NIVEKERVQRITQETFGDYPQPQLEFAQYKLETKFKSGLNGSILAEREEPLRCLIKFSSP 300

Query: 301 HLLEALKSLAPAGI 314
           HLLEALKSLAPA +
Sbjct: 301 HLLEALKSLAPAAL 314


>gi|8922097 centromere protein N isoform 3 [Homo sapiens]
          Length = 204

 Score =  362 bits (929), Expect = e-100
 Identities = 179/184 (97%), Positives = 179/184 (97%)

Query: 1   MDETVAEFIKRTILKIPMNELTTILKAWDFLSENQLQTVNFRQRKESVVQHLIHLCEEKR 60
           MDETVAEFIKRTILKIPMNELTTILKAWDFLSENQLQTVNFRQRKESVVQHLIHLCEEKR
Sbjct: 1   MDETVAEFIKRTILKIPMNELTTILKAWDFLSENQLQTVNFRQRKESVVQHLIHLCEEKR 60

Query: 61  ASISDAALLDIIYMQFHQHQKVWDVFQMSKGPGEDVDLFDMKQFKNSFKKILQRALKNVT 120
           ASISDAALLDIIYMQFHQHQKVWDVFQMSKGPGEDVDLFDMKQFKNSFKKILQRALKNVT
Sbjct: 61  ASISDAALLDIIYMQFHQHQKVWDVFQMSKGPGEDVDLFDMKQFKNSFKKILQRALKNVT 120

Query: 121 VSFRETEENAVWIRIAWGTQYTKPNQYKPTYVVYYSQTPYAFTSSSMLRRNTPLLGQALT 180
           VSFRETEENAVWIRIAWGTQYTKPNQYKPTYVVYYSQTPYAFTSSSMLRRNTPLLGQ L 
Sbjct: 121 VSFRETEENAVWIRIAWGTQYTKPNQYKPTYVVYYSQTPYAFTSSSMLRRNTPLLGQELE 180

Query: 181 IASK 184
              K
Sbjct: 181 ATGK 184


>gi|24415404 MDN1, midasin homolog [Homo sapiens]
          Length = 5596

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 12/134 (8%)

Query: 186 HQIVKMDLRSRYLDSLKAIVFKQYNQTFETHNSTTPLQERSLGLDINMDSRIIHENIVEK 245
           H+++ + LR  + +       K+ N TF  H  T   Q+R    D+    + +H++ V K
Sbjct: 721 HKLIWLPLREAFEELFAQTFSKKQNFTFLGHIQTCYRQKR--WHDLLRLMQHVHKSAVNK 778

Query: 246 ERVQRIT-------QETFG---DYPQPQLEFAQYKLETKFKSGLNGSILAEREEPLRCLI 295
           +     T        E FG   ++ Q Q++  +  L   F  G     + + E  L   I
Sbjct: 779 DGKDSETGLLIKEKWEAFGLRLNHAQQQMKMTENTLLFAFVEGTLAQAVKKGEWILLDEI 838

Query: 296 KFSSPHLLEALKSL 309
             ++P +LE L  L
Sbjct: 839 NLAAPEILECLSGL 852


>gi|154350241 brefeldin A-inhibited guanine nucleotide-exchange
           protein 3 [Homo sapiens]
          Length = 2177

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 17/72 (23%), Positives = 37/72 (51%)

Query: 4   TVAEFIKRTILKIPMNELTTILKAWDFLSENQLQTVNFRQRKESVVQHLIHLCEEKRASI 63
           T+++ +    L++   +  TI++  D   +   Q        + VV  L  LCE+ +A+I
Sbjct: 162 TLSQMLSDLTLQLRQRQENTIIENPDVPQDFGNQGSTVESLCDDVVSVLTVLCEKLQAAI 221

Query: 64  SDAALLDIIYMQ 75
           +D+  L ++Y++
Sbjct: 222 NDSQQLQLLYLE 233


>gi|62241003 cardiomyopathy associated 5 [Homo sapiens]
          Length = 4069

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 11/87 (12%)

Query: 170  RNTPLLGQALTIASKHHQIVKMDLRSRYL--DSLKAIVFKQYNQTFE---------THNS 218
            RN+P+  +     S H+++V  D+ S  L  +S    V  Q  ++FE             
Sbjct: 3413 RNSPVQDEYEFTESLHNEVVPQDILSEELSSESTPEDVLSQGKESFEHISENEFASEAEQ 3472

Query: 219  TTPLQERSLGLDINMDSRIIHENIVEK 245
            +TP +++ LG +   + ++  E + EK
Sbjct: 3473 STPAEQKELGSERKEEDQLSSEVVTEK 3499


>gi|110349721 titin isoform novex-3 [Homo sapiens]
          Length = 5604

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 24/103 (23%), Positives = 52/103 (50%), Gaps = 11/103 (10%)

Query: 199  DSLKAIVFKQYNQTFETHNSTTPLQERSLGLDINMDSRIIHENIVEKERV--------QR 250
            D L  I  ++ + ++ T +S+  + E SLG +I+   + +   I+E E++        +R
Sbjct: 4417 DYLPNIHSERISDSYNTKDSSAIVYEESLGEEIHYPGKKVKHRIIEFEKLHVEKGVLEKR 4476

Query: 251  ITQETFGDYPQPQLEFAQYKLETK--FKSGLNGSIL-AEREEP 290
             T+ +  + PQ +++   + L+ +    S LN ++  AE+  P
Sbjct: 4477 PTRTSIVNPPQKKIDDKAFSLKQRESRSSNLNANMYQAEKMSP 4519


>gi|14251215 Kruppel-like factor 5 [Homo sapiens]
          Length = 457

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 6/50 (12%)

Query: 141 YTKPNQYKPTYVVYYSQTPYAFTSSS------MLRRNTPLLGQALTIASK 184
           YT P+Q+ P    Y+  +P +    S      ML+  TP    A TIASK
Sbjct: 286 YTMPSQFLPQQATYFPPSPPSSEPGSPDRQAEMLQNLTPPPSYAATIASK 335


>gi|205360947 microtubule associated monoxygenase, calponin and LIM
            domain containing 1 isoform 1 [Homo sapiens]
          Length = 1067

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 20/95 (21%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 2    DETVAEFIKRTILKIPMNELTTILKAWDFLSEN-----QLQTVNFRQRKESVVQHLIHLC 56
            +E +  F K   ++  +NE+   L+  +          + Q+ +  Q+K+  V  L+ L 
Sbjct: 919  EEEMKRFCKAQTIQRRLNEIEAALRELEAEGVKLELALRRQSSSPEQQKKLWVGQLLQLV 978

Query: 57   EEKRASISDAALLDIIYMQFHQHQKVWDVFQMSKG 91
            ++K + +++ A L I   + +  +K W + Q  +G
Sbjct: 979  DKKNSLVAEEAELMITVQELNLEEKQWQLDQELRG 1013



 Score = 28.9 bits (63), Expect = 6.9
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 100 DMKQFKNSFKKILQRALKNVTVSFRETEENAVWIRIAWGTQYTKPNQYKPTYV 152
           +MK+F  +  + +QR L  +  + RE E   V + +A   Q + P Q K  +V
Sbjct: 921 EMKRFCKA--QTIQRRLNEIEAALRELEAEGVKLELALRRQSSSPEQQKKLWV 971


>gi|226530313 microtubule associated monoxygenase, calponin and LIM
           domain containing 1 isoform 2 [Homo sapiens]
          Length = 981

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 20/95 (21%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 2   DETVAEFIKRTILKIPMNELTTILKAWDFLSEN-----QLQTVNFRQRKESVVQHLIHLC 56
           +E +  F K   ++  +NE+   L+  +          + Q+ +  Q+K+  V  L+ L 
Sbjct: 833 EEEMKRFCKAQTIQRRLNEIEAALRELEAEGVKLELALRRQSSSPEQQKKLWVGQLLQLV 892

Query: 57  EEKRASISDAALLDIIYMQFHQHQKVWDVFQMSKG 91
           ++K + +++ A L I   + +  +K W + Q  +G
Sbjct: 893 DKKNSLVAEEAELMITVQELNLEEKQWQLDQELRG 927



 Score = 28.9 bits (63), Expect = 6.9
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 100 DMKQFKNSFKKILQRALKNVTVSFRETEENAVWIRIAWGTQYTKPNQYKPTYV 152
           +MK+F  +  + +QR L  +  + RE E   V + +A   Q + P Q K  +V
Sbjct: 835 EMKRFCKA--QTIQRRLNEIEAALRELEAEGVKLELALRRQSSSPEQQKKLWV 885


>gi|33186901 hypothetical protein LOC359845 [Homo sapiens]
          Length = 214

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 275 FKSGLNGSILAEREEPLRCLIKFSSP-HLLEALKSLAPAGIADAPLSPLLTCIPNKRMNY 333
           F  G+    L  +E     L+K+ S  H ++ ++   P G+A A  S  +TC+PN     
Sbjct: 90  FGEGVEFDPLPPKEVRYTSLVKYDSERHFIDDVQ--LPLGLAVASCSQTVTCVPNGTWRN 147

Query: 334 FK 335
           +K
Sbjct: 148 YK 149


>gi|239755296 PREDICTED: similar to hCG1644292 [Homo sapiens]
          Length = 671

 Score = 28.5 bits (62), Expect = 9.0
 Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 1/75 (1%)

Query: 77  HQHQKVWDVFQMSKGPGEDVDLFDMKQFKNSFKKILQRALKNVTVSFRETEENAVWIRIA 136
           H     ++ F +    G + D  ++  +  S   IL R   N      +T  N   +R+ 
Sbjct: 22  HYLTNSFEDFNLQNSSGCEKDFVEIWDYHTS-GNILGRYCANTIPDSTDTSSNTAVVRVW 80

Query: 137 WGTQYTKPNQYKPTY 151
           WG+Q +      P Y
Sbjct: 81  WGSQGSAGTSTSPNY 95


>gi|239749791 PREDICTED: similar to hCG1644292 [Homo sapiens]
          Length = 671

 Score = 28.5 bits (62), Expect = 9.0
 Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 1/75 (1%)

Query: 77  HQHQKVWDVFQMSKGPGEDVDLFDMKQFKNSFKKILQRALKNVTVSFRETEENAVWIRIA 136
           H     ++ F +    G + D  ++  +  S   IL R   N      +T  N   +R+ 
Sbjct: 22  HYLTNSFEDFNLQNSSGCEKDFVEIWDYHTS-GNILGRYCANTIPDSTDTSSNTAVVRVW 80

Query: 137 WGTQYTKPNQYKPTY 151
           WG+Q +      P Y
Sbjct: 81  WGSQGSAGTSTSPNY 95


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.133    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,779,385
Number of Sequences: 37866
Number of extensions: 487270
Number of successful extensions: 1143
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1137
Number of HSP's gapped (non-prelim): 15
length of query: 339
length of database: 18,247,518
effective HSP length: 103
effective length of query: 236
effective length of database: 14,347,320
effective search space: 3385967520
effective search space used: 3385967520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.