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Search of human proteins with 154689666
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|154689666 ATPase, H+ transporting, V0 subunit isoform 1
[Homo sapiens]
(130 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|154689666 ATPase, H+ transporting, V0 subunit isoform 1 [Homo... 273 4e-74
gi|154689796 ATPase, H+ transporting, V0 subunit isoform 2 [Homo... 207 1e-54
gi|4502319 ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e... 135 7e-33
gi|239752789 PREDICTED: similar to ATPase, H+ transporting, lyso... 102 7e-23
gi|239747332 PREDICTED: hypothetical protein XP_002346425 [Homo ... 102 7e-23
gi|239741157 PREDICTED: hypothetical protein XP_002342123 [Homo ... 102 7e-23
gi|239048390 transcription factor MAFF isoform b [Homo sapiens] 33 0.049
gi|239048388 transcription factor MAFF isoform a [Homo sapiens] 33 0.049
gi|239048350 transcription factor MAFF isoform a [Homo sapiens] 33 0.049
gi|6912490 transcription factor MAFF isoform a [Homo sapiens] 33 0.049
gi|4557807 G protein-coupled receptor 143 [Homo sapiens] 31 0.24
gi|115511028 transmembrane 4 L six family member 19 [Homo sapiens] 28 2.1
gi|7662254 hephaestin isoform b [Homo sapiens] 27 6.0
gi|195963313 hephaestin isoform a [Homo sapiens] 27 6.0
gi|195947365 hephaestin isoform c [Homo sapiens] 27 6.0
gi|239752695 PREDICTED: hypothetical protein XP_002345326 [Homo ... 26 7.8
gi|239747229 PREDICTED: hypothetical protein XP_002346943 [Homo ... 26 7.8
gi|239741037 PREDICTED: hypothetical protein XP_002342072 [Homo ... 26 7.8
gi|89257346 G protein-coupled receptor 20 [Homo sapiens] 26 7.8
>gi|154689666 ATPase, H+ transporting, V0 subunit isoform 1 [Homo
sapiens]
Length = 130
Score = 273 bits (697), Expect = 4e-74
Identities = 130/130 (100%), Positives = 130/130 (100%)
Query: 1 MRVRGPARLIASGARLLLRMLSALPGWGPAHLQRPLLGPASCLGILRPAMTAHSFALPVI 60
MRVRGPARLIASGARLLLRMLSALPGWGPAHLQRPLLGPASCLGILRPAMTAHSFALPVI
Sbjct: 1 MRVRGPARLIASGARLLLRMLSALPGWGPAHLQRPLLGPASCLGILRPAMTAHSFALPVI 60
Query: 61 IFTTFWGLVGIAGPWFVPKGPNRGVIITMLVATAVCCYLFWLIAILAQLNPLFGPQLKNE 120
IFTTFWGLVGIAGPWFVPKGPNRGVIITMLVATAVCCYLFWLIAILAQLNPLFGPQLKNE
Sbjct: 61 IFTTFWGLVGIAGPWFVPKGPNRGVIITMLVATAVCCYLFWLIAILAQLNPLFGPQLKNE 120
Query: 121 TIWYVRFLWE 130
TIWYVRFLWE
Sbjct: 121 TIWYVRFLWE 130
>gi|154689796 ATPase, H+ transporting, V0 subunit isoform 2 [Homo
sapiens]
Length = 213
Score = 207 bits (528), Expect = 1e-54
Identities = 104/120 (86%), Positives = 106/120 (88%), Gaps = 5/120 (4%)
Query: 1 MRVRGPARLIASGARLLLRMLSALPGWGPAHLQRPLLGPASCLGILRPAMTAHSFALPVI 60
MRVRGPARLIASGARLLLRMLSALPGWGPAHLQRPLLGPASCLGILRPAMTAHSFALPVI
Sbjct: 1 MRVRGPARLIASGARLLLRMLSALPGWGPAHLQRPLLGPASCLGILRPAMTAHSFALPVI 60
Query: 61 IFTTFWGLVGIAGPWFVPKGPNRGVIITMLVATAVCCYLF-----WLIAILAQLNPLFGP 115
IFTTFWGLVGIAGPWFVPKGPNRGVIITMLVATAVCCYL +A L+ P GP
Sbjct: 61 IFTTFWGLVGIAGPWFVPKGPNRGVIITMLVATAVCCYLLCPALGMTVAPLSLTTPSSGP 120
>gi|4502319 ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1
[Homo sapiens]
Length = 81
Score = 135 bits (341), Expect = 7e-33
Identities = 57/80 (71%), Positives = 66/80 (82%)
Query: 50 MTAHSFALPVIIFTTFWGLVGIAGPWFVPKGPNRGVIITMLVATAVCCYLFWLIAILAQL 109
M H +P+I+ + FWG VG PWF+PKGPNRGVIITMLV +VCCYLFWLIAILAQL
Sbjct: 1 MAYHGLTVPLIVMSVFWGFVGFLVPWFIPKGPNRGVIITMLVTCSVCCYLFWLIAILAQL 60
Query: 110 NPLFGPQLKNETIWYVRFLW 129
NPLFGPQLKNETIWY+++ W
Sbjct: 61 NPLFGPQLKNETIWYLKYHW 80
>gi|239752789 PREDICTED: similar to ATPase, H+ transporting,
lysosomal 9kDa, V0 subunit e1 [Homo sapiens]
Length = 191
Score = 102 bits (255), Expect = 7e-23
Identities = 44/77 (57%), Positives = 55/77 (71%)
Query: 53 HSFALPVIIFTTFWGLVGIAGPWFVPKGPNRGVIITMLVATAVCCYLFWLIAILAQLNPL 112
HS + +I+ + FWG + PWF+PK +R VIIT+LV +VCCYLFWL+AIL PL
Sbjct: 114 HSLMVLLIVISMFWGFLSFLVPWFIPKSLSRVVIITILVTCSVCCYLFWLVAILFHFCPL 173
Query: 113 FGPQLKNETIWYVRFLW 129
FGPQLKNET WY+R W
Sbjct: 174 FGPQLKNETSWYLRHHW 190
>gi|239747332 PREDICTED: hypothetical protein XP_002346425 [Homo
sapiens]
Length = 191
Score = 102 bits (255), Expect = 7e-23
Identities = 44/77 (57%), Positives = 55/77 (71%)
Query: 53 HSFALPVIIFTTFWGLVGIAGPWFVPKGPNRGVIITMLVATAVCCYLFWLIAILAQLNPL 112
HS + +I+ + FWG + PWF+PK +R VIIT+LV +VCCYLFWL+AIL PL
Sbjct: 114 HSLMVLLIVISMFWGFLSFLVPWFIPKSLSRVVIITILVTCSVCCYLFWLVAILFHFCPL 173
Query: 113 FGPQLKNETIWYVRFLW 129
FGPQLKNET WY+R W
Sbjct: 174 FGPQLKNETSWYLRHHW 190
>gi|239741157 PREDICTED: hypothetical protein XP_002342123 [Homo
sapiens]
Length = 191
Score = 102 bits (255), Expect = 7e-23
Identities = 44/77 (57%), Positives = 55/77 (71%)
Query: 53 HSFALPVIIFTTFWGLVGIAGPWFVPKGPNRGVIITMLVATAVCCYLFWLIAILAQLNPL 112
HS + +I+ + FWG + PWF+PK +R VIIT+LV +VCCYLFWL+AIL PL
Sbjct: 114 HSLMVLLIVISMFWGFLSFLVPWFIPKSLSRVVIITILVTCSVCCYLFWLVAILFHFCPL 173
Query: 113 FGPQLKNETIWYVRFLW 129
FGPQLKNET WY+R W
Sbjct: 174 FGPQLKNETSWYLRHHW 190
>gi|239048390 transcription factor MAFF isoform b [Homo sapiens]
Length = 135
Score = 33.5 bits (75), Expect = 0.049
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 4 RGPARLIASGARLLLRMLSALPGWGPAHLQRPLLGPASC 42
RGPA L+A + + + + G GPAH P GPASC
Sbjct: 96 RGPATLVAPASVITIVKSTPGSGSGPAHGPDPAHGPASC 134
>gi|239048388 transcription factor MAFF isoform a [Homo sapiens]
Length = 164
Score = 33.5 bits (75), Expect = 0.049
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 4 RGPARLIASGARLLLRMLSALPGWGPAHLQRPLLGPASC 42
RGPA L+A + + + + G GPAH P GPASC
Sbjct: 125 RGPATLVAPASVITIVKSTPGSGSGPAHGPDPAHGPASC 163
>gi|239048350 transcription factor MAFF isoform a [Homo sapiens]
Length = 164
Score = 33.5 bits (75), Expect = 0.049
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 4 RGPARLIASGARLLLRMLSALPGWGPAHLQRPLLGPASC 42
RGPA L+A + + + + G GPAH P GPASC
Sbjct: 125 RGPATLVAPASVITIVKSTPGSGSGPAHGPDPAHGPASC 163
>gi|6912490 transcription factor MAFF isoform a [Homo sapiens]
Length = 164
Score = 33.5 bits (75), Expect = 0.049
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 4 RGPARLIASGARLLLRMLSALPGWGPAHLQRPLLGPASC 42
RGPA L+A + + + + G GPAH P GPASC
Sbjct: 125 RGPATLVAPASVITIVKSTPGSGSGPAHGPDPAHGPASC 163
>gi|4557807 G protein-coupled receptor 143 [Homo sapiens]
Length = 424
Score = 31.2 bits (69), Expect = 0.24
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 11 ASGARLLLRMLSALPGWGPAHLQRPLLGPASCLGILRPAMTAHSF-ALPVIIFTTFW 66
+ G RL L +L LPG PA P P + + ILR A L ++I +T W
Sbjct: 56 SGGLRLALGLLQLLPGRRPAGPGSPATSPPASVRILRAAAACDLLGCLGMVIRSTVW 112
>gi|115511028 transmembrane 4 L six family member 19 [Homo
sapiens]
Length = 209
Score = 28.1 bits (61), Expect = 2.1
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 5 GPARLIASGARLLLRMLSALPGWGPAHLQRPLLGPASCLG 44
G A L A+GA + L LP W +L R LLG + LG
Sbjct: 23 GTAALFAAGANVAL----LLPNWDVTYLLRGLLGRHAMLG 58
>gi|7662254 hephaestin isoform b [Homo sapiens]
Length = 891
Score = 26.6 bits (57), Expect = 6.0
Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 27/95 (28%)
Query: 28 GPAHLQRPLLGPASCLGILRPAMTAHSFALPVIIF------------------TTFWGLV 69
G + RP GP LGIL P + + ++F TT W L
Sbjct: 525 GTFRIPRPRTGPEEHLGILGPLIKGEVGDILTVVFKNNASRPYSVHAHGVLESTTVWPLA 584
Query: 70 GIAG-----PWFVPK----GPNRGVIITMLVATAV 95
G W +P+ GPN ++ + +AV
Sbjct: 585 AEPGEVVTYQWNIPERSGPGPNDSACVSWIYYSAV 619
>gi|195963313 hephaestin isoform a [Homo sapiens]
Length = 1161
Score = 26.6 bits (57), Expect = 6.0
Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 27/95 (28%)
Query: 28 GPAHLQRPLLGPASCLGILRPAMTAHSFALPVIIF------------------TTFWGLV 69
G + RP GP LGIL P + + ++F TT W L
Sbjct: 795 GTFRIPRPRTGPEEHLGILGPLIKGEVGDILTVVFKNNASRPYSVHAHGVLESTTVWPLA 854
Query: 70 GIAG-----PWFVPK----GPNRGVIITMLVATAV 95
G W +P+ GPN ++ + +AV
Sbjct: 855 AEPGEVVTYQWNIPERSGPGPNDSACVSWIYYSAV 889
>gi|195947365 hephaestin isoform c [Homo sapiens]
Length = 1160
Score = 26.6 bits (57), Expect = 6.0
Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 27/95 (28%)
Query: 28 GPAHLQRPLLGPASCLGILRPAMTAHSFALPVIIF------------------TTFWGLV 69
G + RP GP LGIL P + + ++F TT W L
Sbjct: 795 GTFRIPRPRTGPEEHLGILGPLIKGEVGDILTVVFKNNASRPYSVHAHGVLESTTVWPLA 854
Query: 70 GIAG-----PWFVPK----GPNRGVIITMLVATAV 95
G W +P+ GPN ++ + +AV
Sbjct: 855 AEPGEVVTYQWNIPERSGPGPNDSACVSWIYYSAV 889
>gi|239752695 PREDICTED: hypothetical protein XP_002345326 [Homo
sapiens]
Length = 1014
Score = 26.2 bits (56), Expect = 7.8
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 27 WGPAHLQRPLLGPASCL 43
WGP Q PL P+SCL
Sbjct: 336 WGPLLSQEPLARPSSCL 352
>gi|239747229 PREDICTED: hypothetical protein XP_002346943 [Homo
sapiens]
Length = 1014
Score = 26.2 bits (56), Expect = 7.8
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 27 WGPAHLQRPLLGPASCL 43
WGP Q PL P+SCL
Sbjct: 336 WGPLLSQEPLARPSSCL 352
>gi|239741037 PREDICTED: hypothetical protein XP_002342072 [Homo
sapiens]
Length = 1014
Score = 26.2 bits (56), Expect = 7.8
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 27 WGPAHLQRPLLGPASCL 43
WGP Q PL P+SCL
Sbjct: 336 WGPLLSQEPLARPSSCL 352
>gi|89257346 G protein-coupled receptor 20 [Homo sapiens]
Length = 358
Score = 26.2 bits (56), Expect = 7.8
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 49 AMTAHSFALPVIIFTTFWG--LVGIAGPWFVPKGPNRGV-----IITMLVATAVC 96
A+T F LP+++ + F G + ++ P + +G R V ++T+L+ VC
Sbjct: 199 ALTVLEFLLPLLVISVFTGRIMCALSRPGLLHQGRQRRVRAMQLLLTVLIIFLVC 253
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.331 0.146 0.505
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,387,963
Number of Sequences: 37866
Number of extensions: 237689
Number of successful extensions: 734
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 720
Number of HSP's gapped (non-prelim): 19
length of query: 130
length of database: 18,247,518
effective HSP length: 90
effective length of query: 40
effective length of database: 14,839,578
effective search space: 593583120
effective search space used: 593583120
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.