Guide to the Human Genome
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Name: ATP6V0E1 Sequence: fasta or formatted (81aa) NCBI GI: 4502319
Description:

ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1

Referenced in:

Lysosomes and Related Organelles
Small RNAs in RNA Processing

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.7          3           1
 C cysteine            3.7          3           2
 D aspartate           0.0          0           0
 E glutamate           1.2          1           1
 F phenylalanine       7.4          6           1
 G glycine             7.4          6           1
 H histidine           2.5          2           1
 I isoleucine          8.6          7           2
 K lysine              3.7          3           1
 L leucine            13.6         11           1
 M methionine          3.7          3           1
 N asparagine          3.7          3           1
 P proline             8.6          7           1
 Q glutamine           2.5          2           1
 R arginine            1.2          1           1
 S serine              2.5          2           1
 T threonine           4.9          4           1
 V valine              9.9          8           1
 W tryptophan          6.2          5           1
 Y tyrosine            4.9          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e... 
LOC100292475          0.712   PREDICTED: similar to ATPase, H+ transporting, lyso...
LOC100291038          0.712   PREDICTED: hypothetical protein XP_002346425 
LOC100287946          0.712   PREDICTED: hypothetical protein XP_002342123 
ATP6V0E2              0.705   ATPase, H+ transporting, V0 subunit isoform 1 [Homo...
ATP6V0E2              0.346   ATPase, H+ transporting, V0 subunit isoform 2 [Homo...
SLC16A1               0.013   solute carrier family 16, member 1 
WDR63                 0.013   WD repeat domain 63 
APH1B                 0.006   presenilin stabilization factor-like isoform 2 [Hom...
WFS1                  0.006   wolframin 
WFS1                  0.006   wolframin 
SCAMP3                0.006   secretory carrier membrane protein 3 isoform 2 [Homo...
SCAMP3                0.006   secretory carrier membrane protein 3 isoform 1 [Homo...
XPO4                  0.006   exportin 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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