Guide to the Human Genome
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Name: MAFF Sequence: fasta or formatted (164aa) NCBI GI: 6912490
Description:

transcription factor MAFF isoform a

Referenced in:

Additional Genes in Development

Other entries for this name:
alt mRNA [164aa] transcription factor MAFF isoform a
alt mRNA [164aa] transcription factor MAFF isoform a
alt prot [135aa] transcription factor MAFF isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.2         20           3
 C cysteine            2.4          4           1
 D aspartate           3.0          5           1
 E glutamate           8.5         14           2
 F phenylalanine       0.6          1           1
 G glycine             6.7         11           1
 H histidine           2.4          4           1
 I isoleucine          1.8          3           1
 K lysine              7.3         12           1
 L leucine            11.6         19           1
 M methionine          1.8          3           1
 N asparagine          2.4          4           1
 P proline             5.5          9           1
 Q glutamine           3.0          5           1
 R arginine           10.4         17           3
 S serine              9.8         16           2
 T threonine           3.7          6           1
 V valine              6.1         10           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transcription factor MAFF isoform a 
MAFF                  1.000   transcription factor MAFF isoform a 
MAFF                  1.000   transcription factor MAFF isoform a 
MAFF                  0.817   transcription factor MAFF isoform b 
MAFK                  0.556   v-maf musculoaponeurotic fibrosarcoma oncogene homolo...
MAFG                  0.508   v-maf musculoaponeurotic fibrosarcoma oncogene homolo...
MAFG                  0.508   v-maf musculoaponeurotic fibrosarcoma oncogene homol...
MAFB                  0.275   transcription factor MAFB 
MAF                   0.254   v-maf musculoaponeurotic fibrosarcoma oncogene homol...
MAF                   0.254   v-maf musculoaponeurotic fibrosarcoma oncogene homolo...
MAFA                  0.244   v-maf musculoaponeurotic fibrosarcoma oncogene homol...
NRL                   0.224   neural retina leucine zipper 
FOSL1                 0.075   FOS-like antigen 1 
PLEC1                 0.051   plectin 1 isoform 11 
PLEC1                 0.051   plectin 1 isoform 10 
PLEC1                 0.051   plectin 1 isoform 8 
PLEC1                 0.051   plectin 1 isoform 7 
PLEC1                 0.051   plectin 1 isoform 6 
PLEC1                 0.051   plectin 1 isoform 3 
PLEC1                 0.051   plectin 1 isoform 2 
PLEC1                 0.051   plectin 1 isoform 1 
XBP1                  0.051   X-box binding protein 1 isoform XBP1(S) 
GOLGA2                0.051   Golgi autoantigen, golgin subfamily a, 2 
XBP1                  0.047   X-box binding protein 1 isoform XBP1(U) 
MYH13                 0.047   myosin, heavy polypeptide 13, skeletal muscle [Homo...
MYH1                  0.047   myosin, heavy chain 1, skeletal muscle, adult [Homo...
MYH2                  0.047   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.047   myosin, heavy chain 2, skeletal muscle, adult [Homo...
NFE2L1                0.044   nuclear factor erythroid 2-like 1 
MYH3                  0.041   myosin, heavy chain 3, skeletal muscle, embryonic [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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