Guide to the Human Genome
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Name: KDELC2 Sequence: fasta or formatted (507aa) NCBI GI: 153218487
Description:

KDEL (Lys-Asp-Glu-Leu) containing 2

Referenced in:

ER, Golgi, and the Secretory Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         28           2
 C cysteine            1.4          7           1
 D aspartate           5.1         26           1
 E glutamate           7.5         38           2
 F phenylalanine       3.7         19           3
 G glycine             5.3         27           1
 H histidine           2.2         11           1
 I isoleucine          3.6         18           2
 K lysine              7.1         36           2
 L leucine            12.0         61           3
 M methionine          2.4         12           1
 N asparagine          3.0         15           2
 P proline             6.9         35           1
 Q glutamine           4.7         24           2
 R arginine            6.3         32           2
 S serine              5.7         29           2
 T threonine           3.6         18           1
 V valine              7.1         36           3
 W tryptophan          1.4          7           1
 Y tyrosine            5.5         28           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   KDEL (Lys-Asp-Glu-Leu) containing 2 
KDELC1                0.508   KDEL (Lys-Asp-Glu-Leu) containing 1 
KTELC1                0.108   KTEL (Lys-Tyr-Glu-Leu) containing 1 
FLNA                  0.010   filamin A, alpha isoform 2 
FLNA                  0.010   filamin A, alpha isoform 1 
FLNC                  0.008   gamma filamin isoform b 
FLNC                  0.008   gamma filamin isoform a 
FLNB                  0.007   filamin B, beta (actin binding protein 278) 
INO80                 0.007   INO80 complex homolog 1 
FKBP10                0.005   FK506 binding protein 10 
MYBL1                 0.005   v-myb myeloblastosis viral oncogene homolog (avian)...
MYBL1                 0.005   v-myb myeloblastosis viral oncogene homolog (avian)...
ABHD4                 0.005   abhydrolase domain containing 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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