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Search of human proteins with 15082234
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15082234 lactate dehydrogenase A-like 6B [Homo sapiens]
(381 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|15082234 lactate dehydrogenase A-like 6B [Homo sapiens] 762 0.0
gi|221136809 lactate dehydrogenase A-like 6A [Homo sapiens] 568 e-162
gi|47059044 lactate dehydrogenase A-like 6A [Homo sapiens] 568 e-162
gi|5031857 L-lactate dehydrogenase A isoform 1 [Homo sapiens] 500 e-142
gi|9257228 L-lactate dehydrogenase C [Homo sapiens] 468 e-132
gi|4504973 L-lactate dehydrogenase C [Homo sapiens] 468 e-132
gi|4557032 L-lactate dehydrogenase B [Homo sapiens] 459 e-129
gi|207028494 L-lactate dehydrogenase A isoform 2 [Homo sapiens] 323 2e-88
gi|103472011 ubiquitin-conjugating enzyme E2-like isoform a [Hom... 229 4e-60
gi|103472015 ubiquitin-conjugating enzyme E2-like isoform b [Hom... 152 6e-37
gi|5174539 cytosolic malate dehydrogenase [Homo sapiens] 42 7e-04
gi|14150171 THO complex 3 [Homo sapiens] 33 0.33
gi|226437568 apoptosis-inducing factor, mitochondrion-associated... 32 0.95
gi|65787454 apoptosis-inducing factor, mitochondrion-associated,... 32 0.95
gi|21389617 apoptosis-inducing factor, mitochondrion-associated,... 32 0.95
gi|113722120 G protein-coupled receptor 98 precursor [Homo sapiens] 29 6.2
gi|42518065 tight junction protein 2 (zona occludens 2) isoform ... 29 6.2
gi|42518070 tight junction protein 2 (zona occludens 2) isoform ... 29 6.2
gi|239787104 zinc finger protein 610 isoform a [Homo sapiens] 29 8.0
gi|239787101 zinc finger protein 610 isoform a [Homo sapiens] 29 8.0
gi|239787098 zinc finger protein 610 isoform a [Homo sapiens] 29 8.0
gi|239756344 PREDICTED: hypothetical protein [Homo sapiens] 29 8.0
>gi|15082234 lactate dehydrogenase A-like 6B [Homo sapiens]
Length = 381
Score = 762 bits (1968), Expect = 0.0
Identities = 381/381 (100%), Positives = 381/381 (100%)
Query: 1 MSWTVPVVRASQRVSSVGANFLCLGMALCPRQATRIPLNGTWLFTPVSKMATVKSELIER 60
MSWTVPVVRASQRVSSVGANFLCLGMALCPRQATRIPLNGTWLFTPVSKMATVKSELIER
Sbjct: 1 MSWTVPVVRASQRVSSVGANFLCLGMALCPRQATRIPLNGTWLFTPVSKMATVKSELIER 60
Query: 61 FTSEKPVHHSKVSIIGTGSVGMACAISILLKGLSDELALVDLDEDKLKGETMDLQHGSPF 120
FTSEKPVHHSKVSIIGTGSVGMACAISILLKGLSDELALVDLDEDKLKGETMDLQHGSPF
Sbjct: 61 FTSEKPVHHSKVSIIGTGSVGMACAISILLKGLSDELALVDLDEDKLKGETMDLQHGSPF 120
Query: 121 TKMPNIVCSKDYFVTANSNLVIITAGARQEKGETRLNLVQRNVAIFKLMISSIVQYSPHC 180
TKMPNIVCSKDYFVTANSNLVIITAGARQEKGETRLNLVQRNVAIFKLMISSIVQYSPHC
Sbjct: 121 TKMPNIVCSKDYFVTANSNLVIITAGARQEKGETRLNLVQRNVAIFKLMISSIVQYSPHC 180
Query: 181 KLIIVSNPVDILTYVAWKLSAFPKNRIIGSGCNLDTARFRFLIGQKLGIHSESCHGWILG 240
KLIIVSNPVDILTYVAWKLSAFPKNRIIGSGCNLDTARFRFLIGQKLGIHSESCHGWILG
Sbjct: 181 KLIIVSNPVDILTYVAWKLSAFPKNRIIGSGCNLDTARFRFLIGQKLGIHSESCHGWILG 240
Query: 241 EHGDSSVPVWSGVNIAGVPLKDLNSDIGTDKDPEQWKNVHKEVTATAYEIIKMKGYTSWA 300
EHGDSSVPVWSGVNIAGVPLKDLNSDIGTDKDPEQWKNVHKEVTATAYEIIKMKGYTSWA
Sbjct: 241 EHGDSSVPVWSGVNIAGVPLKDLNSDIGTDKDPEQWKNVHKEVTATAYEIIKMKGYTSWA 300
Query: 301 IGLSVADLTESILKNLRRIHPVSTIIKGLYGIDEEVFLSIPCILGENGITNLIKIKLTPE 360
IGLSVADLTESILKNLRRIHPVSTIIKGLYGIDEEVFLSIPCILGENGITNLIKIKLTPE
Sbjct: 301 IGLSVADLTESILKNLRRIHPVSTIIKGLYGIDEEVFLSIPCILGENGITNLIKIKLTPE 360
Query: 361 EEAHLKKSAKTLWEIQNKLKL 381
EEAHLKKSAKTLWEIQNKLKL
Sbjct: 361 EEAHLKKSAKTLWEIQNKLKL 381
>gi|221136809 lactate dehydrogenase A-like 6A [Homo sapiens]
Length = 332
Score = 568 bits (1463), Expect = e-162
Identities = 273/332 (82%), Positives = 309/332 (93%)
Query: 50 MATVKSELIERFTSEKPVHHSKVSIIGTGSVGMACAISILLKGLSDELALVDLDEDKLKG 109
MAT+KSELI+ F E+ +HH+K+SI+GTGSVG+ACAISILLKGLSDEL LVD+DE KLKG
Sbjct: 1 MATIKSELIKNFAEEEAIHHNKISIVGTGSVGVACAISILLKGLSDELVLVDVDEGKLKG 60
Query: 110 ETMDLQHGSPFTKMPNIVCSKDYFVTANSNLVIITAGARQEKGETRLNLVQRNVAIFKLM 169
ETMDLQHGSPF KMPNIV SKDY VTANSNLVIITAGARQ+KGETRL+LVQRNV+IFKLM
Sbjct: 61 ETMDLQHGSPFMKMPNIVSSKDYLVTANSNLVIITAGARQKKGETRLDLVQRNVSIFKLM 120
Query: 170 ISSIVQYSPHCKLIIVSNPVDILTYVAWKLSAFPKNRIIGSGCNLDTARFRFLIGQKLGI 229
I +I QYSPHCKL+IV+NPVDILTYVAWKLS FPKNR+IGSGCNLD+ARFR+ IGQ+LGI
Sbjct: 121 IPNITQYSPHCKLLIVTNPVDILTYVAWKLSGFPKNRVIGSGCNLDSARFRYFIGQRLGI 180
Query: 230 HSESCHGWILGEHGDSSVPVWSGVNIAGVPLKDLNSDIGTDKDPEQWKNVHKEVTATAYE 289
HSESCHG ILGEHGDSSVPVWSGVNIAGVPLKDLN DIGTDKDPEQW+NVHK+V ++ YE
Sbjct: 181 HSESCHGLILGEHGDSSVPVWSGVNIAGVPLKDLNPDIGTDKDPEQWENVHKKVISSGYE 240
Query: 290 IIKMKGYTSWAIGLSVADLTESILKNLRRIHPVSTIIKGLYGIDEEVFLSIPCILGENGI 349
++KMKGYTSW I LSVADLTESILKNLRR+HPVST+ KGLYGI+E++FLS+PCILGENGI
Sbjct: 241 MVKMKGYTSWGISLSVADLTESILKNLRRVHPVSTLSKGLYGINEDIFLSVPCILGENGI 300
Query: 350 TNLIKIKLTPEEEAHLKKSAKTLWEIQNKLKL 381
T+LIK+KLT EEEA L+KSA+TLWEIQ +LKL
Sbjct: 301 TDLIKVKLTLEEEACLQKSAETLWEIQKELKL 332
>gi|47059044 lactate dehydrogenase A-like 6A [Homo sapiens]
Length = 332
Score = 568 bits (1463), Expect = e-162
Identities = 273/332 (82%), Positives = 309/332 (93%)
Query: 50 MATVKSELIERFTSEKPVHHSKVSIIGTGSVGMACAISILLKGLSDELALVDLDEDKLKG 109
MAT+KSELI+ F E+ +HH+K+SI+GTGSVG+ACAISILLKGLSDEL LVD+DE KLKG
Sbjct: 1 MATIKSELIKNFAEEEAIHHNKISIVGTGSVGVACAISILLKGLSDELVLVDVDEGKLKG 60
Query: 110 ETMDLQHGSPFTKMPNIVCSKDYFVTANSNLVIITAGARQEKGETRLNLVQRNVAIFKLM 169
ETMDLQHGSPF KMPNIV SKDY VTANSNLVIITAGARQ+KGETRL+LVQRNV+IFKLM
Sbjct: 61 ETMDLQHGSPFMKMPNIVSSKDYLVTANSNLVIITAGARQKKGETRLDLVQRNVSIFKLM 120
Query: 170 ISSIVQYSPHCKLIIVSNPVDILTYVAWKLSAFPKNRIIGSGCNLDTARFRFLIGQKLGI 229
I +I QYSPHCKL+IV+NPVDILTYVAWKLS FPKNR+IGSGCNLD+ARFR+ IGQ+LGI
Sbjct: 121 IPNITQYSPHCKLLIVTNPVDILTYVAWKLSGFPKNRVIGSGCNLDSARFRYFIGQRLGI 180
Query: 230 HSESCHGWILGEHGDSSVPVWSGVNIAGVPLKDLNSDIGTDKDPEQWKNVHKEVTATAYE 289
HSESCHG ILGEHGDSSVPVWSGVNIAGVPLKDLN DIGTDKDPEQW+NVHK+V ++ YE
Sbjct: 181 HSESCHGLILGEHGDSSVPVWSGVNIAGVPLKDLNPDIGTDKDPEQWENVHKKVISSGYE 240
Query: 290 IIKMKGYTSWAIGLSVADLTESILKNLRRIHPVSTIIKGLYGIDEEVFLSIPCILGENGI 349
++KMKGYTSW I LSVADLTESILKNLRR+HPVST+ KGLYGI+E++FLS+PCILGENGI
Sbjct: 241 MVKMKGYTSWGISLSVADLTESILKNLRRVHPVSTLSKGLYGINEDIFLSVPCILGENGI 300
Query: 350 TNLIKIKLTPEEEAHLKKSAKTLWEIQNKLKL 381
T+LIK+KLT EEEA L+KSA+TLWEIQ +LKL
Sbjct: 301 TDLIKVKLTLEEEACLQKSAETLWEIQKELKL 332
>gi|5031857 L-lactate dehydrogenase A isoform 1 [Homo sapiens]
Length = 332
Score = 500 bits (1287), Expect = e-142
Identities = 236/331 (71%), Positives = 288/331 (87%)
Query: 50 MATVKSELIERFTSEKPVHHSKVSIIGTGSVGMACAISILLKGLSDELALVDLDEDKLKG 109
MAT+K +LI E+ +K++++G G+VGMACAISIL+K L+DELALVD+ EDKLKG
Sbjct: 1 MATLKDQLIYNLLKEEQTPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKG 60
Query: 110 ETMDLQHGSPFTKMPNIVCSKDYFVTANSNLVIITAGARQEKGETRLNLVQRNVAIFKLM 169
E MDLQHGS F + P IV KDY VTANS LVIITAGARQ++GE+RLNLVQRNV IFK +
Sbjct: 61 EMMDLQHGSLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFI 120
Query: 170 ISSIVQYSPHCKLIIVSNPVDILTYVAWKLSAFPKNRIIGSGCNLDTARFRFLIGQKLGI 229
I ++V+YSP+CKL+IVSNPVDILTYVAWK+S FPKNR+IGSGCNLD+ARFR+L+G++LG+
Sbjct: 121 IPNVVKYSPNCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV 180
Query: 230 HSESCHGWILGEHGDSSVPVWSGVNIAGVPLKDLNSDIGTDKDPEQWKNVHKEVTATAYE 289
H SCHGW+LGEHGDSSVPVWSG+N+AGV LK L+ D+GTDKD EQWK VHK+V +AYE
Sbjct: 181 HPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYE 240
Query: 290 IIKMKGYTSWAIGLSVADLTESILKNLRRIHPVSTIIKGLYGIDEEVFLSIPCILGENGI 349
+IK+KGYTSWAIGLSVADL ESI+KNLRR+HPVST+IKGLYGI ++VFLS+PCILG+NGI
Sbjct: 241 VIKLKGYTSWAIGLSVADLAESIMKNLRRVHPVSTMIKGLYGIKDDVFLSVPCILGQNGI 300
Query: 350 TNLIKIKLTPEEEAHLKKSAKTLWEIQNKLK 380
++L+K+ LT EEEA LKKSA TLW IQ +L+
Sbjct: 301 SDLVKVTLTSEEEARLKKSADTLWGIQKELQ 331
>gi|9257228 L-lactate dehydrogenase C [Homo sapiens]
Length = 332
Score = 468 bits (1204), Expect = e-132
Identities = 223/330 (67%), Positives = 270/330 (81%)
Query: 50 MATVKSELIERFTSEKPVHHSKVSIIGTGSVGMACAISILLKGLSDELALVDLDEDKLKG 109
M+TVK +LIE+ + K++I+GTG+VGMACAISILLK L+DELALVD+ DKLKG
Sbjct: 1 MSTVKEQLIEKLIEDDENSQCKITIVGTGAVGMACAISILLKDLADELALVDVALDKLKG 60
Query: 110 ETMDLQHGSPFTKMPNIVCSKDYFVTANSNLVIITAGARQEKGETRLNLVQRNVAIFKLM 169
E MDLQHGS F I KDY V+ANS +VI+TAGARQ++GETRL LVQRNVAI K +
Sbjct: 61 EMMDLQHGSLFFSTSKITSGKDYSVSANSRIVIVTAGARQQEGETRLALVQRNVAIMKSI 120
Query: 170 ISSIVQYSPHCKLIIVSNPVDILTYVAWKLSAFPKNRIIGSGCNLDTARFRFLIGQKLGI 229
I +IV YSP CK+++VSNPVDILTY+ WK+S P R+IGSGCNLD+ARFR+LIG+KLG+
Sbjct: 121 IPAIVHYSPDCKILVVSNPVDILTYIVWKISGLPVTRVIGSGCNLDSARFRYLIGEKLGV 180
Query: 230 HSESCHGWILGEHGDSSVPVWSGVNIAGVPLKDLNSDIGTDKDPEQWKNVHKEVTATAYE 289
H SCHGWI+GEHGDSSVP+WSGVN+AGV LK L+ +GTD D E WKN+HK+V +AYE
Sbjct: 181 HPTSCHGWIIGEHGDSSVPLWSGVNVAGVALKTLDPKLGTDSDKEHWKNIHKQVIQSAYE 240
Query: 290 IIKMKGYTSWAIGLSVADLTESILKNLRRIHPVSTIIKGLYGIDEEVFLSIPCILGENGI 349
IIK+KGYTSWAIGLSV DL SILKNLRR+HPVST++KGLYGI EE+FLSIPC+LG NG+
Sbjct: 241 IIKLKGYTSWAIGLSVMDLVGSILKNLRRVHPVSTMVKGLYGIKEELFLSIPCVLGRNGV 300
Query: 350 TNLIKIKLTPEEEAHLKKSAKTLWEIQNKL 379
++++KI L EEEA KKSA+TLW IQ L
Sbjct: 301 SDVVKINLNSEEEALFKKSAETLWNIQKDL 330
>gi|4504973 L-lactate dehydrogenase C [Homo sapiens]
Length = 332
Score = 468 bits (1204), Expect = e-132
Identities = 223/330 (67%), Positives = 270/330 (81%)
Query: 50 MATVKSELIERFTSEKPVHHSKVSIIGTGSVGMACAISILLKGLSDELALVDLDEDKLKG 109
M+TVK +LIE+ + K++I+GTG+VGMACAISILLK L+DELALVD+ DKLKG
Sbjct: 1 MSTVKEQLIEKLIEDDENSQCKITIVGTGAVGMACAISILLKDLADELALVDVALDKLKG 60
Query: 110 ETMDLQHGSPFTKMPNIVCSKDYFVTANSNLVIITAGARQEKGETRLNLVQRNVAIFKLM 169
E MDLQHGS F I KDY V+ANS +VI+TAGARQ++GETRL LVQRNVAI K +
Sbjct: 61 EMMDLQHGSLFFSTSKITSGKDYSVSANSRIVIVTAGARQQEGETRLALVQRNVAIMKSI 120
Query: 170 ISSIVQYSPHCKLIIVSNPVDILTYVAWKLSAFPKNRIIGSGCNLDTARFRFLIGQKLGI 229
I +IV YSP CK+++VSNPVDILTY+ WK+S P R+IGSGCNLD+ARFR+LIG+KLG+
Sbjct: 121 IPAIVHYSPDCKILVVSNPVDILTYIVWKISGLPVTRVIGSGCNLDSARFRYLIGEKLGV 180
Query: 230 HSESCHGWILGEHGDSSVPVWSGVNIAGVPLKDLNSDIGTDKDPEQWKNVHKEVTATAYE 289
H SCHGWI+GEHGDSSVP+WSGVN+AGV LK L+ +GTD D E WKN+HK+V +AYE
Sbjct: 181 HPTSCHGWIIGEHGDSSVPLWSGVNVAGVALKTLDPKLGTDSDKEHWKNIHKQVIQSAYE 240
Query: 290 IIKMKGYTSWAIGLSVADLTESILKNLRRIHPVSTIIKGLYGIDEEVFLSIPCILGENGI 349
IIK+KGYTSWAIGLSV DL SILKNLRR+HPVST++KGLYGI EE+FLSIPC+LG NG+
Sbjct: 241 IIKLKGYTSWAIGLSVMDLVGSILKNLRRVHPVSTMVKGLYGIKEELFLSIPCVLGRNGV 300
Query: 350 TNLIKIKLTPEEEAHLKKSAKTLWEIQNKL 379
++++KI L EEEA KKSA+TLW IQ L
Sbjct: 301 SDVVKINLNSEEEALFKKSAETLWNIQKDL 330
>gi|4557032 L-lactate dehydrogenase B [Homo sapiens]
Length = 334
Score = 459 bits (1181), Expect = e-129
Identities = 222/332 (66%), Positives = 271/332 (81%), Gaps = 1/332 (0%)
Query: 50 MATVKSELIERFTSEKP-VHHSKVSIIGTGSVGMACAISILLKGLSDELALVDLDEDKLK 108
MAT+K +LI E+ V ++K++++G G VGMACAISIL K L+DELALVD+ EDKLK
Sbjct: 1 MATLKEKLIAPVAEEEATVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLK 60
Query: 109 GETMDLQHGSPFTKMPNIVCSKDYFVTANSNLVIITAGARQEKGETRLNLVQRNVAIFKL 168
GE MDLQHGS F + P IV KDY VTANS +V++TAG RQ++GE+RLNLVQRNV +FK
Sbjct: 61 GEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKF 120
Query: 169 MISSIVQYSPHCKLIIVSNPVDILTYVAWKLSAFPKNRIIGSGCNLDTARFRFLIGQKLG 228
+I IV+YSP C +I+VSNPVDILTYV WKLS PK+R+IGSGCNLD+ARFR+L+ +KLG
Sbjct: 121 IIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLG 180
Query: 229 IHSESCHGWILGEHGDSSVPVWSGVNIAGVPLKDLNSDIGTDKDPEQWKNVHKEVTATAY 288
IH SCHGWILGEHGDSSV VWSGVN+AGV L++LN ++GTD D E WK VHK V +AY
Sbjct: 181 IHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAY 240
Query: 289 EIIKMKGYTSWAIGLSVADLTESILKNLRRIHPVSTIIKGLYGIDEEVFLSIPCILGENG 348
E+IK+KGYT+WAIGLSVADL ES+LKNL RIHPVST++KG+YGI+ EVFLS+PCIL G
Sbjct: 241 EVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMYGIENEVFLSLPCILNARG 300
Query: 349 ITNLIKIKLTPEEEAHLKKSAKTLWEIQNKLK 380
+T++I KL +E A LKKSA TLW+IQ LK
Sbjct: 301 LTSVINQKLKDDEVAQLKKSADTLWDIQKDLK 332
>gi|207028494 L-lactate dehydrogenase A isoform 2 [Homo sapiens]
Length = 274
Score = 323 bits (828), Expect = 2e-88
Identities = 147/197 (74%), Positives = 177/197 (89%)
Query: 184 IVSNPVDILTYVAWKLSAFPKNRIIGSGCNLDTARFRFLIGQKLGIHSESCHGWILGEHG 243
IVS VDILTYVAWK+S FPKNR+IGSGCNLD+ARFR+L+G++LG+H SCHGW+LGEHG
Sbjct: 77 IVSGKVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEHG 136
Query: 244 DSSVPVWSGVNIAGVPLKDLNSDIGTDKDPEQWKNVHKEVTATAYEIIKMKGYTSWAIGL 303
DSSVPVWSG+N+AGV LK L+ D+GTDKD EQWK VHK+V +AYE+IK+KGYTSWAIGL
Sbjct: 137 DSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYEVIKLKGYTSWAIGL 196
Query: 304 SVADLTESILKNLRRIHPVSTIIKGLYGIDEEVFLSIPCILGENGITNLIKIKLTPEEEA 363
SVADL ESI+KNLRR+HPVST+IKGLYGI ++VFLS+PCILG+NGI++L+K+ LT EEEA
Sbjct: 197 SVADLAESIMKNLRRVHPVSTMIKGLYGIKDDVFLSVPCILGQNGISDLVKVTLTSEEEA 256
Query: 364 HLKKSAKTLWEIQNKLK 380
LKKSA TLW IQ +L+
Sbjct: 257 RLKKSADTLWGIQKELQ 273
Score = 98.6 bits (244), Expect = 8e-21
Identities = 48/81 (59%), Positives = 61/81 (75%)
Query: 50 MATVKSELIERFTSEKPVHHSKVSIIGTGSVGMACAISILLKGLSDELALVDLDEDKLKG 109
MAT+K +LI E+ +K++++G G+VGMACAISIL+K L+DELALVD+ EDKLKG
Sbjct: 1 MATLKDQLIYNLLKEEQTPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKG 60
Query: 110 ETMDLQHGSPFTKMPNIVCSK 130
E MDLQHGS F + P IV K
Sbjct: 61 EMMDLQHGSLFLRTPKIVSGK 81
>gi|103472011 ubiquitin-conjugating enzyme E2-like isoform a [Homo
sapiens]
Length = 471
Score = 229 bits (583), Expect = 4e-60
Identities = 120/313 (38%), Positives = 189/313 (60%), Gaps = 25/313 (7%)
Query: 70 SKVSIIGTGSVGMACAISILLKGLSDELALVDLDEDKLKGETMDLQHGSPFTKMPNIVCS 129
+K++++G G +G+AC ++I KG++D L L+DL E KG TMDL+ +PN+ S
Sbjct: 183 NKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGT-KGATMDLE----IFNLPNVEIS 237
Query: 130 KDYFVTANSNLVIITAGARQEKGETRLNLVQRNVAIFKLMISSIVQYSPHCKLIIVSNPV 189
KD +A+S +VI T + ++ L++VQ NV +F+ ++ ++ YS H L++ S PV
Sbjct: 238 KDLSASAHSKVVIFTVNSLGSS-QSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPV 296
Query: 190 DILTYVAWKLSAFPKNRIIGSGCNLDTARFRFLIGQKLGIHSESCHGWILGEHGDSSVPV 249
+I+TYV WKLS FP NR+IG GCNLD+ R +++I L + W++GE G+ V
Sbjct: 297 EIMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQGEDKVLT 356
Query: 250 WSGVNIAGVPLKDLNSDIGTDKDPEQWKNVHKEVTATAYEIIKMKGYTSWAIGLSVADLT 309
WSG ++ + Q N A E++++KG SW++GLSVAD+
Sbjct: 357 WSG-----------QEEVVSHTSQVQLSN-------RAMELLRVKGQRSWSVGLSVADMV 398
Query: 310 ESILKNLRRIHPVSTIIKGLYGIDEEVFLSIPCILGENGITNLIKIKLTPEEEAH-LKKS 368
+SI+ N +++H VS + KG Y I+ EVFLS+PCILG NG++ +IK L + L+ S
Sbjct: 399 DSIVNNKKKVHSVSALAKGYYDINSEVFLSLPCILGTNGVSEVIKTTLKEDTVTEKLQSS 458
Query: 369 AKTLWEIQNKLKL 381
A ++ +Q +LKL
Sbjct: 459 ASSIHSLQQQLKL 471
>gi|103472015 ubiquitin-conjugating enzyme E2-like isoform b [Homo
sapiens]
Length = 379
Score = 152 bits (383), Expect = 6e-37
Identities = 74/183 (40%), Positives = 116/183 (63%), Gaps = 6/183 (3%)
Query: 70 SKVSIIGTGSVGMACAISILLKGLSDELALVDLDEDKLKGETMDLQHGSPFTKMPNIVCS 129
+K++++G G +G+AC ++I KG++D L L+DL E KG TMDL+ +PN+ S
Sbjct: 183 NKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGT-KGATMDLE----IFNLPNVEIS 237
Query: 130 KDYFVTANSNLVIITAGARQEKGETRLNLVQRNVAIFKLMISSIVQYSPHCKLIIVSNPV 189
KD +A+S +VI T + ++ L++VQ NV +F+ ++ ++ YS H L++ S PV
Sbjct: 238 KDLSASAHSKVVIFTVNSLGSS-QSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPV 296
Query: 190 DILTYVAWKLSAFPKNRIIGSGCNLDTARFRFLIGQKLGIHSESCHGWILGEHGDSSVPV 249
+I+TYV WKLS FP NR+IG GCNLD+ R +++I L + W++GE G+ V
Sbjct: 297 EIMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQGEDKVLT 356
Query: 250 WSG 252
WSG
Sbjct: 357 WSG 359
>gi|5174539 cytosolic malate dehydrogenase [Homo sapiens]
Length = 334
Score = 42.4 bits (98), Expect = 7e-04
Identities = 49/198 (24%), Positives = 86/198 (43%), Gaps = 13/198 (6%)
Query: 67 VHHSKVSIIGTGSV-GMACAISILLKGLSDELALVDLDEDKLKGETMDLQHGSPFTKMPN 125
+ +S + IG GSV G I ++L ++ + ++D G M+LQ +
Sbjct: 16 IAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLD-------GVLMELQDCALPLLKDV 68
Query: 126 IVCSKDYFVTANSNLVIITAGARQEKGETRLNLVQRNVAIFKLMISSIVQYS-PHCKLII 184
I K+ + ++ I+ + +G R +L++ NV IFK +++ +Y+ K+I+
Sbjct: 69 IATDKEDVAFKDLDVAILVGSMPRREGMERKDLLKANVKIFKSQGAALDKYAKKSVKVIV 128
Query: 185 VSNPVDILTYVAWKLSAFPKNRIIGSGCNLDTARFRFLIGQKLGIHSESCHGWIL-GEHG 243
V NP + A K + LD R + I KLG+ + I+ G H
Sbjct: 129 VGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTANDVKNVIIWGNHS 188
Query: 244 DSSVPVWSGVNIAGVPLK 261
+ P VN A V L+
Sbjct: 189 STQYP---DVNHAKVKLQ 203
>gi|14150171 THO complex 3 [Homo sapiens]
Length = 351
Score = 33.5 bits (75), Expect = 0.33
Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 15/135 (11%)
Query: 62 TSEKPVHHSKVSIIGTGSVGMACAISILLKGLSDELALVDL-DEDKLKGETMDLQHGSPF 120
T E H +KV SV +C L G D+ A V L ++D+L E HG
Sbjct: 48 TREFLAHSAKVH-----SVAWSCDGRRLASGSFDKTASVFLLEKDRLVKENNYRGHGDSV 102
Query: 121 TKMPNIVCSKDYFVTANSNLVIITAGARQEKGETRLNLVQRNVAIFKLMISSIVQYSPHC 180
++ + D FVTA+ + I R K +N N+ I +SP
Sbjct: 103 DQLCWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINIC---------WSPDG 153
Query: 181 KLIIVSNPVDILTYV 195
+ I V N D++T++
Sbjct: 154 QTIAVGNKDDVVTFI 168
>gi|226437568 apoptosis-inducing factor, mitochondrion-associated, 3
isoform 3 [Homo sapiens]
Length = 604
Score = 32.0 bits (71), Expect = 0.95
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 70 SKVSIIGTGSVGMACAISILLKGLSDELALVDLD 103
+ V I+G G+ G+ CA ++ +G SD + L LD
Sbjct: 201 TNVLIVGAGAAGLVCAETLRQEGFSDRIVLCTLD 234
>gi|65787454 apoptosis-inducing factor, mitochondrion-associated, 3
isoform 2 [Homo sapiens]
Length = 598
Score = 32.0 bits (71), Expect = 0.95
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 70 SKVSIIGTGSVGMACAISILLKGLSDELALVDLD 103
+ V I+G G+ G+ CA ++ +G SD + L LD
Sbjct: 195 TNVLIVGAGAAGLVCAETLRQEGFSDRIVLCTLD 228
>gi|21389617 apoptosis-inducing factor, mitochondrion-associated, 3
isoform 1 [Homo sapiens]
Length = 605
Score = 32.0 bits (71), Expect = 0.95
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 70 SKVSIIGTGSVGMACAISILLKGLSDELALVDLD 103
+ V I+G G+ G+ CA ++ +G SD + L LD
Sbjct: 195 TNVLIVGAGAAGLVCAETLRQEGFSDRIVLCTLD 228
>gi|113722120 G protein-coupled receptor 98 precursor [Homo sapiens]
Length = 6306
Score = 29.3 bits (64), Expect = 6.2
Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 5/124 (4%)
Query: 2 SWTVPVVRASQR-VSSVGANFLCLGMALCPRQATRIPLNGTWLFTPVSKMATVKSELIER 60
S TV + +S+ ++ VGA+ +A + IP +G +F P + AT+ +++
Sbjct: 3553 SVTVKSLNSSKNLIALVGAHSHIYELAYISSHSDFIPSSGELIFEPGEREATIAVNILDD 3612
Query: 61 FTSEKPVHHSKVSI---IGTGSVGMACAISILLKGLSDELALVDLDEDKLKGETMDLQHG 117
EK KV + G +G+ +++I + D +V ++ L + +++
Sbjct: 3613 TVPEKE-ESFKVQLKNPKGGAEIGINDSVTITILSNDDAYGIVAFAQNSLYKQVEEMEQD 3671
Query: 118 SPFT 121
S T
Sbjct: 3672 SLVT 3675
>gi|42518065 tight junction protein 2 (zona occludens 2) isoform 2
[Homo sapiens]
Length = 1043
Score = 29.3 bits (64), Expect = 6.2
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 13/67 (19%)
Query: 131 DYFVTANSNLVIITAGARQEKGETRLNLVQRNVAIFKLMISSIVQYSPHCKLIIVSNPVD 190
D+F TA + AG+ + G RLN V++ I++ H L + VD
Sbjct: 753 DWFQTAKTEPK--DAGSEKSTGVVRLNTVRQ-----------IIEQDKHALLDVTPKAVD 799
Query: 191 ILTYVAW 197
+L Y W
Sbjct: 800 LLNYTQW 806
>gi|42518070 tight junction protein 2 (zona occludens 2) isoform 1
[Homo sapiens]
Length = 1190
Score = 29.3 bits (64), Expect = 6.2
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 13/67 (19%)
Query: 131 DYFVTANSNLVIITAGARQEKGETRLNLVQRNVAIFKLMISSIVQYSPHCKLIIVSNPVD 190
D+F TA + AG+ + G RLN V++ I++ H L + VD
Sbjct: 753 DWFQTAKTEPK--DAGSEKSTGVVRLNTVRQ-----------IIEQDKHALLDVTPKAVD 799
Query: 191 ILTYVAW 197
+L Y W
Sbjct: 800 LLNYTQW 806
>gi|239787104 zinc finger protein 610 isoform a [Homo sapiens]
Length = 462
Score = 28.9 bits (63), Expect = 8.0
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 8/109 (7%)
Query: 266 DIGTDKDPEQWKNVHKEVTATAYEIIKMKGYTSWA-IGLSVADLTE-SILKNLRRIHPVS 323
D+ + E+WK++ A Y + ++ Y + +G+ + DL+ S+LK R +
Sbjct: 28 DVAIEFSQEEWKSLDPGQRAL-YRDVMLENYRNLVFLGICLPDLSIISMLKQRREPLILQ 86
Query: 324 TIIKGLYGID-----EEVFLSIPCILGENGITNLIKIKLTPEEEAHLKK 367
+ +K + D V C+LG N IK +L EAHL +
Sbjct: 87 SQVKIVKNTDGRECVRSVNTGRSCVLGSNAENKPIKNQLGLTLEAHLSE 135
>gi|239787101 zinc finger protein 610 isoform a [Homo sapiens]
Length = 462
Score = 28.9 bits (63), Expect = 8.0
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 8/109 (7%)
Query: 266 DIGTDKDPEQWKNVHKEVTATAYEIIKMKGYTSWA-IGLSVADLTE-SILKNLRRIHPVS 323
D+ + E+WK++ A Y + ++ Y + +G+ + DL+ S+LK R +
Sbjct: 28 DVAIEFSQEEWKSLDPGQRAL-YRDVMLENYRNLVFLGICLPDLSIISMLKQRREPLILQ 86
Query: 324 TIIKGLYGID-----EEVFLSIPCILGENGITNLIKIKLTPEEEAHLKK 367
+ +K + D V C+LG N IK +L EAHL +
Sbjct: 87 SQVKIVKNTDGRECVRSVNTGRSCVLGSNAENKPIKNQLGLTLEAHLSE 135
>gi|239787098 zinc finger protein 610 isoform a [Homo sapiens]
Length = 462
Score = 28.9 bits (63), Expect = 8.0
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 8/109 (7%)
Query: 266 DIGTDKDPEQWKNVHKEVTATAYEIIKMKGYTSWA-IGLSVADLTE-SILKNLRRIHPVS 323
D+ + E+WK++ A Y + ++ Y + +G+ + DL+ S+LK R +
Sbjct: 28 DVAIEFSQEEWKSLDPGQRAL-YRDVMLENYRNLVFLGICLPDLSIISMLKQRREPLILQ 86
Query: 324 TIIKGLYGID-----EEVFLSIPCILGENGITNLIKIKLTPEEEAHLKK 367
+ +K + D V C+LG N IK +L EAHL +
Sbjct: 87 SQVKIVKNTDGRECVRSVNTGRSCVLGSNAENKPIKNQLGLTLEAHLSE 135
>gi|239756344 PREDICTED: hypothetical protein [Homo sapiens]
Length = 212
Score = 28.9 bits (63), Expect = 8.0
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 8 VRASQRVSSVGANFLCLGMALCPRQATRIPLNGTWLFTPVSKMATVKSELIERFTSEKPV 67
+R ++R +S+ + L A C +Q+ PL G+W S MAT S T E
Sbjct: 144 LRPARRAASLSLSSKRLVRAACVKQSRSCPLRGSW----SSSMATSSSASSTGATGEG-- 197
Query: 68 HHSKVSIIGTG 78
HH + G G
Sbjct: 198 HHRHLLCSGFG 208
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,861,858
Number of Sequences: 37866
Number of extensions: 586792
Number of successful extensions: 1173
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1151
Number of HSP's gapped (non-prelim): 24
length of query: 381
length of database: 18,247,518
effective HSP length: 104
effective length of query: 277
effective length of database: 14,309,454
effective search space: 3963718758
effective search space used: 3963718758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.