Guide to the Human Genome
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Name: LDHA Sequence: fasta or formatted (332aa) NCBI GI: 5031857
Description:

L-lactate dehydrogenase A isoform 1

Referenced in:

Crystallins and Other Eye Proteins
Proteins Measured in Common Diagnostic Tests
Glycolysis

Other entries for this name:
alt prot [274aa] L-lactate dehydrogenase A isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         18           1
 C cysteine            1.5          5           1
 D aspartate           5.4         18           2
 E glutamate           5.4         18           3
 F phenylalanine       2.1          7           1
 G glycine             7.8         26           1
 H histidine           2.1          7           1
 I isoleucine          6.9         23           2
 K lysine              8.4         28           2
 L leucine            11.4         38           2
 M methionine          2.7          9           2
 N asparagine          4.5         15           1
 P proline             3.3         11           1
 Q glutamine           3.6         12           2
 R arginine            3.3         11           2
 S serine              7.2         24           2
 T threonine           4.2         14           1
 V valine             10.2         34           2
 W tryptophan          1.8          6           1
 Y tyrosine            2.4          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   L-lactate dehydrogenase A isoform 1 
LDHC                  0.791   L-lactate dehydrogenase C 
LDHC                  0.791   L-lactate dehydrogenase C 
LDHB                  0.784   L-lactate dehydrogenase B 
LDHAL6A               0.762   lactate dehydrogenase A-like 6A 
LDHAL6A               0.762   lactate dehydrogenase A-like 6A 
LDHAL6B               0.748   lactate dehydrogenase A-like 6B 
LDHA                  0.589   L-lactate dehydrogenase A isoform 2 
UEVLD                 0.318   ubiquitin-conjugating enzyme E2-like isoform a [Hom...
UEVLD                 0.195   ubiquitin-conjugating enzyme E2-like isoform b [Hom...
MDH1                  0.035   cytosolic malate dehydrogenase 
UGCGL1                0.011   UDP-glucose ceramide glucosyltransferase-like 1 [Homo...
ZNF212                0.008   zinc finger protein 212 
PTPRG                 0.006   protein tyrosine phosphatase, receptor type, G prec...
GPD2                  0.006   glycerol-3-phosphate dehydrogenase 2, mitochondrial...
GPD2                  0.006   glycerol-3-phosphate dehydrogenase 2, mitochondrial...
TGM1                  0.005   transglutaminase 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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