Guide to the Human Genome
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Name: LDHAL6B Sequence: fasta or formatted (381aa) NCBI GI: 15082234
Description:

lactate dehydrogenase A-like 6B

Referenced in:

Glycolysis

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         22           1
 C cysteine            2.1          8           1
 D aspartate           3.9         15           1
 E glutamate           5.5         21           3
 F phenylalanine       2.6         10           1
 G glycine             7.1         27           1
 H histidine           2.6         10           2
 I isoleucine          9.4         36           2
 K lysine              7.9         30           2
 L leucine            10.5         40           2
 M methionine          2.1          8           1
 N asparagine          4.5         17           1
 P proline             4.2         16           1
 Q glutamine           2.4          9           1
 R arginine            3.4         13           2
 S serine              8.7         33           2
 T threonine           6.0         23           1
 V valine              7.6         29           2
 W tryptophan          2.1          8           1
 Y tyrosine            1.6          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   lactate dehydrogenase A-like 6B 
LDHAL6A               0.737   lactate dehydrogenase A-like 6A 
LDHAL6A               0.737   lactate dehydrogenase A-like 6A 
LDHA                  0.645   L-lactate dehydrogenase A isoform 1 
LDHC                  0.601   L-lactate dehydrogenase C 
LDHC                  0.601   L-lactate dehydrogenase C 
LDHB                  0.589   L-lactate dehydrogenase B 
LDHA                  0.404   L-lactate dehydrogenase A isoform 2 
UEVLD                 0.277   ubiquitin-conjugating enzyme E2-like isoform a [Hom...
UEVLD                 0.172   ubiquitin-conjugating enzyme E2-like isoform b [Hom...
MDH1                  0.023   cytosolic malate dehydrogenase 
THOC3                 0.011   THO complex 3 
AIFM3                 0.009   apoptosis-inducing factor, mitochondrion-associated...
AIFM3                 0.009   apoptosis-inducing factor, mitochondrion-associated,...
AIFM3                 0.009   apoptosis-inducing factor, mitochondrion-associated,...
GPR98                 0.005   G protein-coupled receptor 98 precursor 
TJP2                  0.005   tight junction protein 2 (zona occludens 2) isoform ...
TJP2                  0.005   tight junction protein 2 (zona occludens 2) isoform ...
ZNF610                0.005   zinc finger protein 610 isoform a 
ZNF610                0.005   zinc finger protein 610 isoform a 
ZNF610                0.005   zinc finger protein 610 isoform a 
LOC100292158          0.005   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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