Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 15055541
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15055541 fibroblast growth factor 1 (acidic) isoform 2 [Homo
sapiens]
(60 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|15055541 fibroblast growth factor 1 (acidic) isoform 2 [Homo ... 130 3e-31
gi|222144221 fibroblast growth factor 1 (acidic) isoform 1 propr... 122 8e-29
gi|4503697 fibroblast growth factor 1 (acidic) isoform 1 proprot... 122 8e-29
gi|15055545 fibroblast growth factor 1 (acidic) isoform 3 [Homo ... 122 8e-29
gi|222144273 fibroblast growth factor 1 (acidic) isoform 1 propr... 122 8e-29
gi|222144271 fibroblast growth factor 1 (acidic) isoform 1 propr... 122 8e-29
gi|153285461 fibroblast growth factor 2 [Homo sapiens] 71 2e-13
gi|21614511 fibroblast growth factor 12 isoform 2 [Homo sapiens] 35 0.013
gi|11136630 fibroblast growth factor 12 isoform 1 [Homo sapiens] 35 0.013
gi|9789947 fibroblast growth factor 20 [Homo sapiens] 32 0.11
gi|28872756 fibroblast growth factor 14 isoform 1B [Homo sapiens] 32 0.11
gi|4758368 fibroblast growth factor 14 isoform 1A [Homo sapiens] 32 0.11
gi|15147343 fibroblast growth factor 6 precursor [Homo sapiens] 31 0.19
gi|16306543 fibroblast growth factor 13 isoform 5 [Homo sapiens] 30 0.32
gi|4503707 fibroblast growth factor 9 precursor [Homo sapiens] 29 0.71
gi|213417634 fibroblast growth factor 13 isoform 3 [Homo sapiens] 29 0.71
gi|213417614 fibroblast growth factor 13 isoform 3 [Homo sapiens] 29 0.71
gi|213417610 fibroblast growth factor 13 isoform 2 [Homo sapiens] 29 0.71
gi|213417606 fibroblast growth factor 13 isoform 4 [Homo sapiens] 29 0.71
gi|4758366 fibroblast growth factor 13 isoform 1 [Homo sapiens] 29 0.71
gi|4503691 fibroblast growth factor 16 [Homo sapiens] 29 0.71
gi|239754889 PREDICTED: similar to hCG2036697 [Homo sapiens] 28 1.6
gi|239749428 PREDICTED: hypothetical protein XP_002347033 [Homo ... 28 1.6
gi|239743562 PREDICTED: hypothetical protein XP_002342894 [Homo ... 28 1.6
gi|93102361 palladin [Homo sapiens] 26 6.0
>gi|15055541 fibroblast growth factor 1 (acidic) isoform 2 [Homo
sapiens]
Length = 60
Score = 130 bits (326), Expect = 3e-31
Identities = 60/60 (100%), Positives = 60/60 (100%)
Query: 1 MAEGEITTFTALTEKFNLPPGNYKKPKLLYCSNGGHFLRILPDGTVDGTRDRSDQHTDTK 60
MAEGEITTFTALTEKFNLPPGNYKKPKLLYCSNGGHFLRILPDGTVDGTRDRSDQHTDTK
Sbjct: 1 MAEGEITTFTALTEKFNLPPGNYKKPKLLYCSNGGHFLRILPDGTVDGTRDRSDQHTDTK 60
>gi|222144221 fibroblast growth factor 1 (acidic) isoform 1
proprotein [Homo sapiens]
Length = 155
Score = 122 bits (305), Expect = 8e-29
Identities = 56/56 (100%), Positives = 56/56 (100%)
Query: 1 MAEGEITTFTALTEKFNLPPGNYKKPKLLYCSNGGHFLRILPDGTVDGTRDRSDQH 56
MAEGEITTFTALTEKFNLPPGNYKKPKLLYCSNGGHFLRILPDGTVDGTRDRSDQH
Sbjct: 1 MAEGEITTFTALTEKFNLPPGNYKKPKLLYCSNGGHFLRILPDGTVDGTRDRSDQH 56
>gi|4503697 fibroblast growth factor 1 (acidic) isoform 1
proprotein [Homo sapiens]
Length = 155
Score = 122 bits (305), Expect = 8e-29
Identities = 56/56 (100%), Positives = 56/56 (100%)
Query: 1 MAEGEITTFTALTEKFNLPPGNYKKPKLLYCSNGGHFLRILPDGTVDGTRDRSDQH 56
MAEGEITTFTALTEKFNLPPGNYKKPKLLYCSNGGHFLRILPDGTVDGTRDRSDQH
Sbjct: 1 MAEGEITTFTALTEKFNLPPGNYKKPKLLYCSNGGHFLRILPDGTVDGTRDRSDQH 56
>gi|15055545 fibroblast growth factor 1 (acidic) isoform 3 [Homo
sapiens]
Length = 59
Score = 122 bits (305), Expect = 8e-29
Identities = 56/56 (100%), Positives = 56/56 (100%)
Query: 1 MAEGEITTFTALTEKFNLPPGNYKKPKLLYCSNGGHFLRILPDGTVDGTRDRSDQH 56
MAEGEITTFTALTEKFNLPPGNYKKPKLLYCSNGGHFLRILPDGTVDGTRDRSDQH
Sbjct: 1 MAEGEITTFTALTEKFNLPPGNYKKPKLLYCSNGGHFLRILPDGTVDGTRDRSDQH 56
>gi|222144273 fibroblast growth factor 1 (acidic) isoform 1
proprotein [Homo sapiens]
Length = 155
Score = 122 bits (305), Expect = 8e-29
Identities = 56/56 (100%), Positives = 56/56 (100%)
Query: 1 MAEGEITTFTALTEKFNLPPGNYKKPKLLYCSNGGHFLRILPDGTVDGTRDRSDQH 56
MAEGEITTFTALTEKFNLPPGNYKKPKLLYCSNGGHFLRILPDGTVDGTRDRSDQH
Sbjct: 1 MAEGEITTFTALTEKFNLPPGNYKKPKLLYCSNGGHFLRILPDGTVDGTRDRSDQH 56
>gi|222144271 fibroblast growth factor 1 (acidic) isoform 1
proprotein [Homo sapiens]
Length = 155
Score = 122 bits (305), Expect = 8e-29
Identities = 56/56 (100%), Positives = 56/56 (100%)
Query: 1 MAEGEITTFTALTEKFNLPPGNYKKPKLLYCSNGGHFLRILPDGTVDGTRDRSDQH 56
MAEGEITTFTALTEKFNLPPGNYKKPKLLYCSNGGHFLRILPDGTVDGTRDRSDQH
Sbjct: 1 MAEGEITTFTALTEKFNLPPGNYKKPKLLYCSNGGHFLRILPDGTVDGTRDRSDQH 56
>gi|153285461 fibroblast growth factor 2 [Homo sapiens]
Length = 288
Score = 70.9 bits (172), Expect = 2e-13
Identities = 35/59 (59%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
Query: 1 MAEGEITTFTALTEKFN---LPPGNYKKPKLLYCSNGGHFLRILPDGTVDGTRDRSDQH 56
MA G ITT AL E PPG++K PK LYC NGG FLRI PDG VDG R++SD H
Sbjct: 134 MAAGSITTLPALPEDGGSGAFPPGHFKDPKRLYCKNGGFFLRIHPDGRVDGVREKSDPH 192
>gi|21614511 fibroblast growth factor 12 isoform 2 [Homo sapiens]
Length = 181
Score = 35.0 bits (79), Expect = 0.013
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 32 SNGGHFLRILPDGTVDGTRDRSDQHT 57
S G+FL++ PDGT+DGT+D + +T
Sbjct: 17 SQQGYFLQMHPDGTIDGTKDENSDYT 42
>gi|11136630 fibroblast growth factor 12 isoform 1 [Homo sapiens]
Length = 243
Score = 35.0 bits (79), Expect = 0.013
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 32 SNGGHFLRILPDGTVDGTRDRSDQHT 57
S G+FL++ PDGT+DGT+D + +T
Sbjct: 79 SQQGYFLQMHPDGTIDGTKDENSDYT 104
>gi|9789947 fibroblast growth factor 20 [Homo sapiens]
Length = 211
Score = 32.0 bits (71), Expect = 0.11
Identities = 15/22 (68%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Query: 29 LYCSNGGHFLRILPDGTVDGTR 50
LYC G H L+ILPDG+V GTR
Sbjct: 69 LYCRTGFH-LQILPDGSVQGTR 89
>gi|28872756 fibroblast growth factor 14 isoform 1B [Homo sapiens]
Length = 252
Score = 32.0 bits (71), Expect = 0.11
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 29 LYCSNGGHFLRILPDGTVDGTRDRSDQHT 57
LYC G ++L++ PDG +DGT+D S T
Sbjct: 80 LYCRQG-YYLQMHPDGALDGTKDDSTNST 107
>gi|4758368 fibroblast growth factor 14 isoform 1A [Homo sapiens]
Length = 247
Score = 32.0 bits (71), Expect = 0.11
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 29 LYCSNGGHFLRILPDGTVDGTRDRSDQHT 57
LYC G ++L++ PDG +DGT+D S T
Sbjct: 75 LYCRQG-YYLQMHPDGALDGTKDDSTNST 102
>gi|15147343 fibroblast growth factor 6 precursor [Homo sapiens]
Length = 208
Score = 31.2 bits (69), Expect = 0.19
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 24 KKPKLLYCSNG-GHFLRILPDGTVDGTRDRS 53
K+ + LYC+ G G L++LPDG + GT + +
Sbjct: 83 KRQRRLYCNVGIGFHLQVLPDGRISGTHEEN 113
>gi|16306543 fibroblast growth factor 13 isoform 5 [Homo sapiens]
Length = 192
Score = 30.4 bits (67), Expect = 0.32
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 7/42 (16%)
Query: 22 NYKKPKL------LYCSNGGHFLRILPDGTVDGTRDRSDQHT 57
+Y +P+L LY G H L++ DGT+DGT+D +T
Sbjct: 7 SYSEPQLKGIVTKLYSRQGYH-LQLQADGTIDGTKDEDSTYT 47
>gi|4503707 fibroblast growth factor 9 precursor [Homo sapiens]
Length = 208
Score = 29.3 bits (64), Expect = 0.71
Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 29 LYCSNGGHFLRILPDGTVDGTR 50
LYC G H L I P+GT+ GTR
Sbjct: 66 LYCRTGFH-LEIFPNGTIQGTR 86
>gi|213417634 fibroblast growth factor 13 isoform 3 [Homo sapiens]
Length = 226
Score = 29.3 bits (64), Expect = 0.71
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 32 SNGGHFLRILPDGTVDGTRDRSDQHT 57
S G+ L++ DGT+DGT+D +T
Sbjct: 56 SRQGYHLQLQADGTIDGTKDEDSTYT 81
>gi|213417614 fibroblast growth factor 13 isoform 3 [Homo sapiens]
Length = 226
Score = 29.3 bits (64), Expect = 0.71
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 32 SNGGHFLRILPDGTVDGTRDRSDQHT 57
S G+ L++ DGT+DGT+D +T
Sbjct: 56 SRQGYHLQLQADGTIDGTKDEDSTYT 81
>gi|213417610 fibroblast growth factor 13 isoform 2 [Homo sapiens]
Length = 255
Score = 29.3 bits (64), Expect = 0.71
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 32 SNGGHFLRILPDGTVDGTRDRSDQHT 57
S G+ L++ DGT+DGT+D +T
Sbjct: 85 SRQGYHLQLQADGTIDGTKDEDSTYT 110
>gi|213417606 fibroblast growth factor 13 isoform 4 [Homo sapiens]
Length = 199
Score = 29.3 bits (64), Expect = 0.71
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 32 SNGGHFLRILPDGTVDGTRDRSDQHT 57
S G+ L++ DGT+DGT+D +T
Sbjct: 29 SRQGYHLQLQADGTIDGTKDEDSTYT 54
>gi|4758366 fibroblast growth factor 13 isoform 1 [Homo sapiens]
Length = 245
Score = 29.3 bits (64), Expect = 0.71
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 32 SNGGHFLRILPDGTVDGTRDRSDQHT 57
S G+ L++ DGT+DGT+D +T
Sbjct: 75 SRQGYHLQLQADGTIDGTKDEDSTYT 100
>gi|4503691 fibroblast growth factor 16 [Homo sapiens]
Length = 207
Score = 29.3 bits (64), Expect = 0.71
Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 29 LYCSNGGHFLRILPDGTVDGTR 50
LYC G H L I P+GTV GTR
Sbjct: 65 LYCRTGFH-LEIFPNGTVHGTR 85
>gi|239754889 PREDICTED: similar to hCG2036697 [Homo sapiens]
Length = 1029
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 8 TFTALTEKFNLPPGNYKKPKLLYCSNGGHFLRILPDGTVDGTRDRSDQH 56
T+TA + KF GN + Y G F+R+ PDGTVD +++D++
Sbjct: 211 TWTAESWKFT--KGNTLQ---FYNKLTGGFVRLHPDGTVDAIGEKTDKY 254
>gi|239749428 PREDICTED: hypothetical protein XP_002347033 [Homo
sapiens]
Length = 1029
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 8 TFTALTEKFNLPPGNYKKPKLLYCSNGGHFLRILPDGTVDGTRDRSDQH 56
T+TA + KF GN + Y G F+R+ PDGTVD +++D++
Sbjct: 211 TWTAESWKFT--KGNTLQ---FYNKLTGGFVRLHPDGTVDAIGEKTDKY 254
>gi|239743562 PREDICTED: hypothetical protein XP_002342894 [Homo
sapiens]
Length = 1029
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 8 TFTALTEKFNLPPGNYKKPKLLYCSNGGHFLRILPDGTVDGTRDRSDQH 56
T+TA + KF GN + Y G F+R+ PDGTVD +++D++
Sbjct: 211 TWTAESWKFT--KGNTLQ---FYNKLTGGFVRLHPDGTVDAIGEKTDKY 254
>gi|93102361 palladin [Homo sapiens]
Length = 1106
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 19 PPGNYKKPKLLYCSNGGHFLRILPDGTVDGTRDRSDQHTDTK 60
PP KPKL + RI D + GT+D Q + K
Sbjct: 646 PPPLLAKPKLGFPKKASRTARIASDEEIQGTKDAVIQDLERK 687
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.137 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,784,551
Number of Sequences: 37866
Number of extensions: 100342
Number of successful extensions: 169
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 147
Number of HSP's gapped (non-prelim): 25
length of query: 60
length of database: 18,247,518
effective HSP length: 33
effective length of query: 27
effective length of database: 16,997,940
effective search space: 458944380
effective search space used: 458944380
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.