Guide to the Human Genome
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Name: FGF1 Sequence: fasta or formatted (59aa) NCBI GI: 15055545
Description:

fibroblast growth factor 1 (acidic) isoform 3

Referenced in:

Fibroblast Growth Factors
Lung

Other entries for this name:
alt prot [60aa] fibroblast growth factor 1 (acidic) isoform 2
alt prot [155aa] fibroblast growth factor 1 (acidic) isoform 1 proprotein
alt prot [155aa] fibroblast growth factor 1 (acidic) isoform 1 proprotein
alt prot [155aa] fibroblast growth factor 1 (acidic) isoform 1 proprotein
alt prot [155aa] fibroblast growth factor 1 (acidic) isoform 1 proprotein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.4          2           1
 C cysteine            1.7          1           1
 D aspartate           6.8          4           1
 E glutamate           5.1          3           1
 F phenylalanine       5.1          3           1
 G glycine            10.2          6           2
 H histidine           3.4          2           1
 I isoleucine          3.4          2           1
 K lysine              8.5          5           2
 L leucine            10.2          6           2
 M methionine          1.7          1           1
 N asparagine          6.8          4           1
 P proline             6.8          4           2
 Q glutamine           1.7          1           1
 R arginine            5.1          3           1
 S serine              3.4          2           1
 T threonine          11.9          7           2
 V valine              1.7          1           1
 W tryptophan          0.0          0           0
 Y tyrosine            3.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   fibroblast growth factor 1 (acidic) isoform 3 
FGF1                  0.942   fibroblast growth factor 1 (acidic) isoform 1 propr...
FGF1                  0.942   fibroblast growth factor 1 (acidic) isoform 1 proprot...
FGF1                  0.942   fibroblast growth factor 1 (acidic) isoform 2 
FGF1                  0.942   fibroblast growth factor 1 (acidic) isoform 1 propr...
FGF1                  0.942   fibroblast growth factor 1 (acidic) isoform 1 propr...
FGF2                  0.447   fibroblast growth factor 2 
FGF12                 0.078   fibroblast growth factor 12 isoform 2 
FGF12                 0.078   fibroblast growth factor 12 isoform 1 
FGF20                 0.068   fibroblast growth factor 20 
FGF6                  0.058   fibroblast growth factor 6 precursor 
FGF14                 0.058   fibroblast growth factor 14 isoform 1B 
FGF14                 0.058   fibroblast growth factor 14 isoform 1A 
FGF9                  0.039   fibroblast growth factor 9 precursor 
FGF16                 0.039   fibroblast growth factor 16 
FGF13                 0.029   fibroblast growth factor 13 isoform 5 
LOC100293597          0.029   PREDICTED: similar to hCG2036697 
LOC100291435          0.029   PREDICTED: hypothetical protein XP_002347033 
LOC100287651          0.029   PREDICTED: hypothetical protein XP_002342894 
FGF13                 0.019   fibroblast growth factor 13 isoform 3 
FGF13                 0.019   fibroblast growth factor 13 isoform 3 
FGF13                 0.019   fibroblast growth factor 13 isoform 2 
FGF13                 0.019   fibroblast growth factor 13 isoform 4 
FGF13                 0.019   fibroblast growth factor 13 isoform 1 
GCOM1                 0.010   GRINL1A combined protein isoform 2 
GCOM1                 0.010   GRINL1A combined protein isoform 1 
GCOM1                 0.010   GRINL1A combined protein isoform 8 
GCOM1                 0.010   GRINL1A upstream protein isoform 7 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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