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Search of human proteins with 149408157
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|149408157 glycophorin E precursor [Homo sapiens]
(78 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|149408157 glycophorin E precursor [Homo sapiens] 150 2e-37
gi|149408155 glycophorin E precursor [Homo sapiens] 150 2e-37
gi|75905815 glycophorin B precursor [Homo sapiens] 91 2e-19
gi|75813628 glycophorin A precursor [Homo sapiens] 80 5e-16
gi|4885311 lysophosphatidic acid receptor 4 [Homo sapiens] 29 0.71
gi|239754269 PREDICTED: hypothetical protein [Homo sapiens] 26 7.9
gi|169168665 PREDICTED: hypothetical protein [Homo sapiens] 26 7.9
gi|113417486 PREDICTED: hypothetical protein [Homo sapiens] 26 7.9
gi|239740898 PREDICTED: hypothetical protein [Homo sapiens] 26 7.9
gi|239740827 PREDICTED: hypothetical protein XP_002344067 [Homo ... 26 7.9
gi|239740777 PREDICTED: hypothetical protein [Homo sapiens] 26 7.9
gi|239740724 PREDICTED: hypothetical protein [Homo sapiens] 26 7.9
gi|239740674 PREDICTED: hypothetical protein [Homo sapiens] 26 7.9
gi|239740645 PREDICTED: hypothetical protein [Homo sapiens] 26 7.9
gi|239513940 PREDICTED: hypothetical protein [Homo sapiens] 26 7.9
>gi|149408157 glycophorin E precursor [Homo sapiens]
Length = 78
Score = 150 bits (380), Expect = 2e-37
Identities = 78/78 (100%), Positives = 78/78 (100%)
Query: 1 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGITLINWWAMARVIF 60
MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGITLINWWAMARVIF
Sbjct: 1 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGITLINWWAMARVIF 60
Query: 61 EVMLVVVGMIILISYCIR 78
EVMLVVVGMIILISYCIR
Sbjct: 61 EVMLVVVGMIILISYCIR 78
>gi|149408155 glycophorin E precursor [Homo sapiens]
Length = 78
Score = 150 bits (380), Expect = 2e-37
Identities = 78/78 (100%), Positives = 78/78 (100%)
Query: 1 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGITLINWWAMARVIF 60
MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGITLINWWAMARVIF
Sbjct: 1 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGITLINWWAMARVIF 60
Query: 61 EVMLVVVGMIILISYCIR 78
EVMLVVVGMIILISYCIR
Sbjct: 61 EVMLVVVGMIILISYCIR 78
>gi|75905815 glycophorin B precursor [Homo sapiens]
Length = 91
Score = 90.9 bits (224), Expect = 2e-19
Identities = 56/86 (65%), Positives = 64/86 (74%), Gaps = 8/86 (9%)
Query: 1 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGIT--LINWWAMAR- 57
MYGKIIFVLLLS IVSISA STT VAMHTSTSSSVTKSYISSQTNG T L++ + +
Sbjct: 1 MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNGETGQLVHRFTVPAP 60
Query: 58 -----VIFEVMLVVVGMIILISYCIR 78
+I VM ++G I+LISY IR
Sbjct: 61 VVIILIILCVMAGIIGTILLISYSIR 86
>gi|75813628 glycophorin A precursor [Homo sapiens]
Length = 150
Score = 79.7 bits (195), Expect = 5e-16
Identities = 56/115 (48%), Positives = 62/115 (53%), Gaps = 37/115 (32%)
Query: 1 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGITLINWWA------ 54
MYGKIIFVLLLS IVSISA STT VAMHTSTSSSVTKSYISSQTN + +A
Sbjct: 1 MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNDTHKRDTYAATPRAH 60
Query: 55 -------------------------------MARVIFEVMLVVVGMIILISYCIR 78
+ +IF VM V+G I+LISY IR
Sbjct: 61 EVSEISVRTVYPPEEETGERVQLAHHFSEPEITLIIFGVMAGVIGTILLISYGIR 115
>gi|4885311 lysophosphatidic acid receptor 4 [Homo sapiens]
Length = 370
Score = 29.3 bits (64), Expect = 0.71
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 6 IFVLLLSGIVSISASSTTGVAMHTST-----SSSVTKSYISSQTNGITLINW 52
+++L+LSG +S S STT V T+T S V K+Y+S T I ++ +
Sbjct: 162 VWILVLSGGISASLFSTTNVNNATTTCFEGFSKRVWKTYLSKITIFIEVVGF 213
>gi|239754269 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1531
Score = 25.8 bits (55), Expect = 7.9
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 22/88 (25%)
Query: 13 GIVSISASSTT---GVAMHTSTSSSVTKSY------ISSQTNGITL-------------I 50
G ++ ASSTT GV T ++ T S +S TN +++ +
Sbjct: 1357 GTSTMGASSTTSAHGVRTTTGSTREPTSSTFQETGPVSMGTNTVSMSHTPTNVIKPSGYL 1416
Query: 51 NWWAMARVIFEVMLVVVGMIILISYCIR 78
WA+ + ++ VG+ + +S+C+R
Sbjct: 1417 QPWAIILISLAAVVAAVGLSVGLSFCLR 1444
>gi|169168665 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1521
Score = 25.8 bits (55), Expect = 7.9
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 22/88 (25%)
Query: 13 GIVSISASSTT---GVAMHTSTSSSVTKSY------ISSQTNGITL-------------I 50
G ++ ASSTT GV T ++ T S +S TN +++ +
Sbjct: 1347 GTSTMGASSTTSAHGVRTTTGSTREPTSSTFQETGPVSMGTNTVSMSHTPTNVIKPSGYL 1406
Query: 51 NWWAMARVIFEVMLVVVGMIILISYCIR 78
WA+ + ++ VG+ + +S+C+R
Sbjct: 1407 QPWAIILISLAAVVAAVGLSVGLSFCLR 1434
>gi|113417486 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1612
Score = 25.8 bits (55), Expect = 7.9
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 22/88 (25%)
Query: 13 GIVSISASSTT---GVAMHTSTSSSVTKSY------ISSQTNGITL-------------I 50
G ++ ASSTT GV T ++ T S +S TN +++ +
Sbjct: 1347 GTSTMGASSTTSAHGVRTTTGSTREPTSSTFQETGPVSMGTNTVSMSHTPTNVIKPSGYL 1406
Query: 51 NWWAMARVIFEVMLVVVGMIILISYCIR 78
WA+ + ++ VG+ + +S+C+R
Sbjct: 1407 QPWAIILISLAAVVAAVGLSVGLSFCLR 1434
>gi|239740898 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1542
Score = 25.8 bits (55), Expect = 7.9
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 22/88 (25%)
Query: 13 GIVSISASSTT---GVAMHTSTSSSVTKSY------ISSQTNGITL-------------I 50
G ++ ASSTT GV T ++ T S +S TN +++ +
Sbjct: 1368 GTSTMGASSTTSAHGVRTTTGSTREPTSSTFQETGPVSMGTNTVSMSHTPTNVIKPSGYL 1427
Query: 51 NWWAMARVIFEVMLVVVGMIILISYCIR 78
WA+ + ++ VG+ + +S+C+R
Sbjct: 1428 QPWAIILISLAAVVAAVGLSVGLSFCLR 1455
>gi|239740827 PREDICTED: hypothetical protein XP_002344067 [Homo
sapiens]
Length = 1521
Score = 25.8 bits (55), Expect = 7.9
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 22/88 (25%)
Query: 13 GIVSISASSTT---GVAMHTSTSSSVTKSY------ISSQTNGITL-------------I 50
G ++ ASSTT GV T ++ T S +S TN +++ +
Sbjct: 1347 GTSTMGASSTTSAHGVRTTTGSTREPTSSTFQETGPVSMGTNTVSMSHTPTNVIKPSGYL 1406
Query: 51 NWWAMARVIFEVMLVVVGMIILISYCIR 78
WA+ + ++ VG+ + +S+C+R
Sbjct: 1407 QPWAIILISLAAVVAAVGLSVGLSFCLR 1434
>gi|239740777 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1612
Score = 25.8 bits (55), Expect = 7.9
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 22/88 (25%)
Query: 13 GIVSISASSTT---GVAMHTSTSSSVTKSY------ISSQTNGITL-------------I 50
G ++ ASSTT GV T ++ T S +S TN +++ +
Sbjct: 1347 GTSTMGASSTTSAHGVRTTTGSTREPTSSTFQETGPVSMGTNTVSMSHTPTNVIKPSGYL 1406
Query: 51 NWWAMARVIFEVMLVVVGMIILISYCIR 78
WA+ + ++ VG+ + +S+C+R
Sbjct: 1407 QPWAIILISLAAVVAAVGLSVGLSFCLR 1434
>gi|239740724 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1704
Score = 25.8 bits (55), Expect = 7.9
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 22/88 (25%)
Query: 13 GIVSISASSTT---GVAMHTSTSSSVTKSY------ISSQTNGITL-------------I 50
G ++ ASSTT GV T ++ T S +S TN +++ +
Sbjct: 1347 GTSTMGASSTTSAHGVRTTTGSTREPTSSTFQETGPVSMGTNTVSMSHTPTNVIKPSGYL 1406
Query: 51 NWWAMARVIFEVMLVVVGMIILISYCIR 78
WA+ + ++ VG+ + +S+C+R
Sbjct: 1407 QPWAIILISLAAVVAAVGLSVGLSFCLR 1434
>gi|239740674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1531
Score = 25.8 bits (55), Expect = 7.9
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 22/88 (25%)
Query: 13 GIVSISASSTT---GVAMHTSTSSSVTKSY------ISSQTNGITL-------------I 50
G ++ ASSTT GV T ++ T S +S TN +++ +
Sbjct: 1357 GTSTMGASSTTSAHGVRTTTGSTREPTSSTFQETGPVSMGTNTVSMSHTPTNVIKPSGYL 1416
Query: 51 NWWAMARVIFEVMLVVVGMIILISYCIR 78
WA+ + ++ VG+ + +S+C+R
Sbjct: 1417 QPWAIILISLAAVVAAVGLSVGLSFCLR 1444
>gi|239740645 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1531
Score = 25.8 bits (55), Expect = 7.9
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 22/88 (25%)
Query: 13 GIVSISASSTT---GVAMHTSTSSSVTKSY------ISSQTNGITL-------------I 50
G ++ ASSTT GV T ++ T S +S TN +++ +
Sbjct: 1357 GTSTMGASSTTSAHGVRTTTGSTREPTSSTFQETGPVSMGTNTVSMSHTPTNVIKPSGYL 1416
Query: 51 NWWAMARVIFEVMLVVVGMIILISYCIR 78
WA+ + ++ VG+ + +S+C+R
Sbjct: 1417 QPWAIILISLAAVVAAVGLSVGLSFCLR 1444
>gi|239513940 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1521
Score = 25.8 bits (55), Expect = 7.9
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 22/88 (25%)
Query: 13 GIVSISASSTT---GVAMHTSTSSSVTKSY------ISSQTNGITL-------------I 50
G ++ ASSTT GV T ++ T S +S TN +++ +
Sbjct: 1347 GTSTMGASSTTSAHGVRTTTGSTREPTSSTFQETGPVSMGTNTVSMSHTPTNVIKPSGYL 1406
Query: 51 NWWAMARVIFEVMLVVVGMIILISYCIR 78
WA+ + ++ VG+ + +S+C+R
Sbjct: 1407 QPWAIILISLAAVVAAVGLSVGLSFCLR 1434
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.133 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,839,991
Number of Sequences: 37866
Number of extensions: 44574
Number of successful extensions: 365
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 359
Number of HSP's gapped (non-prelim): 16
length of query: 78
length of database: 18,247,518
effective HSP length: 50
effective length of query: 28
effective length of database: 16,354,218
effective search space: 457918104
effective search space used: 457918104
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.