Search of human proteins with 148833486

Search of human proteins with 148833486

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|148833486 hypothetical protein LOC25912 isoform 3 [Homo
sapiens]
         (253 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|148833486 hypothetical protein LOC25912 isoform 3 [Homo sapiens]   501   e-142
gi|14149688 hypothetical protein LOC25912 isoform 1 [Homo sapiens]    416   e-116
gi|41281688 hypothetical protein LOC25912 isoform 2 [Homo sapiens]    367   e-102
gi|90903231 huntingtin [Homo sapiens]                                  31   0.91 
gi|5453822 nuclear receptor subfamily 4, group A, member 2 [Homo...    31   1.2  
gi|145275216 kinesin family member 2B [Homo sapiens]                   29   3.4  
gi|45827716 ADP-ribosylation factor guanine nucleotide factor 6 ...    29   3.4  
gi|117606360 ADP-ribosylation factor guanine nucleotide factor 6...    29   3.4  
gi|169167744 PREDICTED: similar to hCG1641913 [Homo sapiens]           29   4.5  
gi|239748517 PREDICTED: similar to hCG1641913 [Homo sapiens]           29   4.5  
gi|169167587 PREDICTED: similar to hCG1641913 [Homo sapiens]           29   4.5  
gi|33188443 microfilament and actin filament cross-linker protei...    29   4.5  
gi|33188445 microfilament and actin filament cross-linker protei...    29   4.5  
gi|4507709 tissue specific transplantation antigen P35B [Homo sa...    29   4.5  
gi|156231355 nuclear receptor binding factor 2 [Homo sapiens]          28   7.7  

>gi|148833486 hypothetical protein LOC25912 isoform 3 [Homo sapiens]
          Length = 253

 Score =  501 bits (1291), Expect = e-142
 Identities = 253/253 (100%), Positives = 253/253 (100%)

Query: 1   MASGSNWLSGVNVVLVMAYGSLVFVLLFIFVKRQIMRFAMKSRRGPHVPVGHNAPKDLKE 60
           MASGSNWLSGVNVVLVMAYGSLVFVLLFIFVKRQIMRFAMKSRRGPHVPVGHNAPKDLKE
Sbjct: 1   MASGSNWLSGVNVVLVMAYGSLVFVLLFIFVKRQIMRFAMKSRRGPHVPVGHNAPKDLKE 60

Query: 61  EIDIRLSRVQDIKYEPQLLADDDARLLQLETQGNQSCYNYLYRMKALDAIRTSEIPFHSE 120
           EIDIRLSRVQDIKYEPQLLADDDARLLQLETQGNQSCYNYLYRMKALDAIRTSEIPFHSE
Sbjct: 61  EIDIRLSRVQDIKYEPQLLADDDARLLQLETQGNQSCYNYLYRMKALDAIRTSEIPFHSE 120

Query: 121 GRHPRSLMGKNFRSYLLDLRNTSTPFKGVRKALIDTLLDGYETARYGTGVFGQNEYLRYQ 180
           GRHPRSLMGKNFRSYLLDLRNTSTPFKGVRKALIDTLLDGYETARYGTGVFGQNEYLRYQ
Sbjct: 121 GRHPRSLMGKNFRSYLLDLRNTSTPFKGVRKALIDTLLDGYETARYGTGVFGQNEYLRYQ 180

Query: 181 EALSELATAVKARIGSSQRHHQSAAKDLTQSPEVSPTTIQVTYLPSSQKSKRAKHFLELK 240
           EALSELATAVKARIGSSQRHHQSAAKDLTQSPEVSPTTIQVTYLPSSQKSKRAKHFLELK
Sbjct: 181 EALSELATAVKARIGSSQRHHQSAAKDLTQSPEVSPTTIQVTYLPSSQKSKRAKHFLELK 240

Query: 241 SFKDNYNTLESTL 253
           SFKDNYNTLESTL
Sbjct: 241 SFKDNYNTLESTL 253


>gi|14149688 hypothetical protein LOC25912 isoform 1 [Homo sapiens]
          Length = 219

 Score =  416 bits (1069), Expect = e-116
 Identities = 219/253 (86%), Positives = 219/253 (86%), Gaps = 34/253 (13%)

Query: 1   MASGSNWLSGVNVVLVMAYGSLVFVLLFIFVKRQIMRFAMKSRRGPHVPVGHNAPKDLKE 60
           MASGSNWLSGVNVVLVMAYGSL                                  DLKE
Sbjct: 1   MASGSNWLSGVNVVLVMAYGSL----------------------------------DLKE 26

Query: 61  EIDIRLSRVQDIKYEPQLLADDDARLLQLETQGNQSCYNYLYRMKALDAIRTSEIPFHSE 120
           EIDIRLSRVQDIKYEPQLLADDDARLLQLETQGNQSCYNYLYRMKALDAIRTSEIPFHSE
Sbjct: 27  EIDIRLSRVQDIKYEPQLLADDDARLLQLETQGNQSCYNYLYRMKALDAIRTSEIPFHSE 86

Query: 121 GRHPRSLMGKNFRSYLLDLRNTSTPFKGVRKALIDTLLDGYETARYGTGVFGQNEYLRYQ 180
           GRHPRSLMGKNFRSYLLDLRNTSTPFKGVRKALIDTLLDGYETARYGTGVFGQNEYLRYQ
Sbjct: 87  GRHPRSLMGKNFRSYLLDLRNTSTPFKGVRKALIDTLLDGYETARYGTGVFGQNEYLRYQ 146

Query: 181 EALSELATAVKARIGSSQRHHQSAAKDLTQSPEVSPTTIQVTYLPSSQKSKRAKHFLELK 240
           EALSELATAVKARIGSSQRHHQSAAKDLTQSPEVSPTTIQVTYLPSSQKSKRAKHFLELK
Sbjct: 147 EALSELATAVKARIGSSQRHHQSAAKDLTQSPEVSPTTIQVTYLPSSQKSKRAKHFLELK 206

Query: 241 SFKDNYNTLESTL 253
           SFKDNYNTLESTL
Sbjct: 207 SFKDNYNTLESTL 219


>gi|41281688 hypothetical protein LOC25912 isoform 2 [Homo sapiens]
          Length = 201

 Score =  367 bits (941), Expect = e-102
 Identities = 200/253 (79%), Positives = 201/253 (79%), Gaps = 52/253 (20%)

Query: 1   MASGSNWLSGVNVVLVMAYGSLVFVLLFIFVKRQIMRFAMKSRRGPHVPVGHNAPKDLKE 60
           MASGSNWLSGVNVVLVMAYGSL                                  DLKE
Sbjct: 1   MASGSNWLSGVNVVLVMAYGSL----------------------------------DLKE 26

Query: 61  EIDIRLSRVQDIKYEPQLLADDDARLLQLETQGNQSCYNYLYRMKALDAIRTSEIPFHSE 120
           EIDIRLSRVQDIKYEPQLLADDDARLLQLETQGNQ                  +IPFHSE
Sbjct: 27  EIDIRLSRVQDIKYEPQLLADDDARLLQLETQGNQ------------------KIPFHSE 68

Query: 121 GRHPRSLMGKNFRSYLLDLRNTSTPFKGVRKALIDTLLDGYETARYGTGVFGQNEYLRYQ 180
           GRHPRSLMGKNFRSYLLDLRNTSTPFKGVRKALIDTLLDGYETARYGTGVFGQNEYLRYQ
Sbjct: 69  GRHPRSLMGKNFRSYLLDLRNTSTPFKGVRKALIDTLLDGYETARYGTGVFGQNEYLRYQ 128

Query: 181 EALSELATAVKARIGSSQRHHQSAAKDLTQSPEVSPTTIQVTYLPSSQKSKRAKHFLELK 240
           EALSELATAVKARIGSSQRHHQSAAKDLTQSPEVSPTTIQVTYLPSSQKSKRAKHFLELK
Sbjct: 129 EALSELATAVKARIGSSQRHHQSAAKDLTQSPEVSPTTIQVTYLPSSQKSKRAKHFLELK 188

Query: 241 SFKDNYNTLESTL 253
           SFKDNYNTLESTL
Sbjct: 189 SFKDNYNTLESTL 201


>gi|90903231 huntingtin [Homo sapiens]
          Length = 3144

 Score = 31.2 bits (69), Expect = 0.91
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 19/77 (24%)

Query: 63   DIRLSRVQDIKYEPQLLADDDARLLQLETQGNQSCYNYLYRMKALDAIRTSEIPFHSEGR 122
            DI LSR+Q++ + P L+                SC   + R++  D   TS +  HSEG+
Sbjct: 1692 DIVLSRIQELSFSPYLI----------------SC-TVINRLR--DGDSTSTLEEHSEGK 1732

Query: 123  HPRSLMGKNFRSYLLDL 139
              ++L  + F  +LL L
Sbjct: 1733 QIKNLPEETFSRFLLQL 1749


>gi|5453822 nuclear receptor subfamily 4, group A, member 2 [Homo
           sapiens]
          Length = 598

 Score = 30.8 bits (68), Expect = 1.2
 Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 10/112 (8%)

Query: 117 FHSEGRHPRSLMGKNFRSYLLDLRNTSTPFKGVRKALIDTLLDGYETARYGTGVFGQNEY 176
           +HS G +    +   F  + +DL NT             T +D Y T       +     
Sbjct: 24  YHSSGEYSSDFLTPEFVKFSMDLTNTEIT-ATTSLPSFSTFMDNYSTG------YDVKPP 76

Query: 177 LRYQEALSELATAVKARIGSSQRHHQSAAKDL-TQSPEVSPTTIQVTYLPSS 227
             YQ  LS   +++K  +   Q H+      L  QS E+ P +  V Y PSS
Sbjct: 77  CLYQMPLSGQQSSIK--VEDIQMHNYQQHSHLPPQSEEMMPHSGSVYYKPSS 126


>gi|145275216 kinesin family member 2B [Homo sapiens]
          Length = 673

 Score = 29.3 bits (64), Expect = 3.4
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 4/48 (8%)

Query: 47  HVPVGHNAPKDLKEEI---DIRLSRVQDIKYEPQLLADDDARLLQLET 91
           H P+GH AP+ LK  I   ++ L R + IK  P + +++   + ++ET
Sbjct: 554 HYPIGHEAPRMLKSHIGNSEMSLQRDEFIKI-PYVQSEEQKEIEEVET 600


>gi|45827716 ADP-ribosylation factor guanine nucleotide factor 6
           isoform b [Homo sapiens]
          Length = 513

 Score = 29.3 bits (64), Expect = 3.4
 Identities = 41/210 (19%), Positives = 83/210 (39%), Gaps = 27/210 (12%)

Query: 56  KDLKEEIDIR---LSRVQDIKYEPQL--LADDDARLLQLETQGNQSCYNYLYRMKALDAI 110
           +DLK  + +     S+  D + +P +  L   D R+L  +TQ  +    ++ ++  + A+
Sbjct: 305 EDLKNAVSVHHALASKATDYEKKPNVFKLKTADWRVLLFQTQSPEEMQGWINKINCVAAV 364

Query: 111 RTSEIPFH----SEGRHPRSLMG---------KNFRSYLLDLRNTSTPFKGVRKALIDTL 157
            ++  PF     S+ +  R L+          +  +S+   L+  +T     R    D  
Sbjct: 365 FSAP-PFPAAIGSQKKFSRPLLPATTTKLSQEEQLKSHESKLKQITTELAEHRSYPPDKK 423

Query: 158 LDGYETARYGTGVFGQNEYLRYQEALSELATAVKARIG----SSQRHHQSAAKDLTQSPE 213
           +   +   Y      ++ YL +++   E+  ++    G    S+     +  K    SP 
Sbjct: 424 VKAKDVDEYKL----KDHYLEFEKTRYEMYVSILKEGGKELLSNDESEAAGLKKSHSSPS 479

Query: 214 VSPTTIQVTYLPSSQKSKRAKHFLELKSFK 243
           ++P T  +T       S+R  H  E  S K
Sbjct: 480 LNPDTSPITAKVKRNVSERKDHRPETPSIK 509


>gi|117606360 ADP-ribosylation factor guanine nucleotide factor 6
            isoform a [Homo sapiens]
          Length = 1047

 Score = 29.3 bits (64), Expect = 3.4
 Identities = 41/210 (19%), Positives = 83/210 (39%), Gaps = 27/210 (12%)

Query: 56   KDLKEEIDIR---LSRVQDIKYEPQL--LADDDARLLQLETQGNQSCYNYLYRMKALDAI 110
            +DLK  + +     S+  D + +P +  L   D R+L  +TQ  +    ++ ++  + A+
Sbjct: 839  EDLKNAVSVHHALASKATDYEKKPNVFKLKTADWRVLLFQTQSPEEMQGWINKINCVAAV 898

Query: 111  RTSEIPFH----SEGRHPRSLMG---------KNFRSYLLDLRNTSTPFKGVRKALIDTL 157
             ++  PF     S+ +  R L+          +  +S+   L+  +T     R    D  
Sbjct: 899  FSAP-PFPAAIGSQKKFSRPLLPATTTKLSQEEQLKSHESKLKQITTELAEHRSYPPDKK 957

Query: 158  LDGYETARYGTGVFGQNEYLRYQEALSELATAVKARIG----SSQRHHQSAAKDLTQSPE 213
            +   +   Y      ++ YL +++   E+  ++    G    S+     +  K    SP 
Sbjct: 958  VKAKDVDEYKL----KDHYLEFEKTRYEMYVSILKEGGKELLSNDESEAAGLKKSHSSPS 1013

Query: 214  VSPTTIQVTYLPSSQKSKRAKHFLELKSFK 243
            ++P T  +T       S+R  H  E  S K
Sbjct: 1014 LNPDTSPITAKVKRNVSERKDHRPETPSIK 1043


>gi|169167744 PREDICTED: similar to hCG1641913 [Homo sapiens]
          Length = 506

 Score = 28.9 bits (63), Expect = 4.5
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 170 VFGQNEYLRYQEALSELATAVKARIGSSQRHHQSAAKDLT 209
           VFG+   L YQEA+  +AT  +   G   + +   A D+T
Sbjct: 300 VFGEEVDLAYQEAMLNMATINRTAAGLMHKFNAHVATDIT 339


>gi|239748517 PREDICTED: similar to hCG1641913 [Homo sapiens]
          Length = 506

 Score = 28.9 bits (63), Expect = 4.5
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 170 VFGQNEYLRYQEALSELATAVKARIGSSQRHHQSAAKDLT 209
           VFG+   L YQEA+  +AT  +   G   + +   A D+T
Sbjct: 300 VFGEEVDLAYQEAMLNMATINRTAAGLMHKFNAHVATDIT 339


>gi|169167587 PREDICTED: similar to hCG1641913 [Homo sapiens]
          Length = 506

 Score = 28.9 bits (63), Expect = 4.5
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 170 VFGQNEYLRYQEALSELATAVKARIGSSQRHHQSAAKDLT 209
           VFG+   L YQEA+  +AT  +   G   + +   A D+T
Sbjct: 300 VFGEEVDLAYQEAMLNMATINRTAAGLMHKFNAHVATDIT 339


>gi|33188443 microfilament and actin filament cross-linker protein
            isoform b [Homo sapiens]
          Length = 5938

 Score = 28.9 bits (63), Expect = 4.5
 Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 2/106 (1%)

Query: 148  GVRKALIDTLLDGYETARYGTGVFGQNEYLRYQEALSELATAVKARIGSSQRHHQSAAKD 207
            G    LI   LDG +T RY       ++ LR  E   +LAT  ++         +   ++
Sbjct: 4070 GEEVLLIQEKLDGIKT-RYADITVTSSKALRTLEQARQLATKFQSTYEELTGWLREVEEE 4128

Query: 208  LTQSPEVSPTTIQVTYLPSSQKSKRAKHFLELKSFKDNYNTLESTL 253
            L  S   SPT  Q+      QK  + K  +E +   D  N +   L
Sbjct: 4129 LATSGGQSPTGEQIPQFQQRQKELK-KEVMEHRLVLDTVNEVSRAL 4173


>gi|33188445 microfilament and actin filament cross-linker protein
            isoform a [Homo sapiens]
          Length = 5430

 Score = 28.9 bits (63), Expect = 4.5
 Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 2/106 (1%)

Query: 148  GVRKALIDTLLDGYETARYGTGVFGQNEYLRYQEALSELATAVKARIGSSQRHHQSAAKD 207
            G    LI   LDG +T RY       ++ LR  E   +LAT  ++         +   ++
Sbjct: 3568 GEEVLLIQEKLDGIKT-RYADITVTSSKALRTLEQARQLATKFQSTYEELTGWLREVEEE 3626

Query: 208  LTQSPEVSPTTIQVTYLPSSQKSKRAKHFLELKSFKDNYNTLESTL 253
            L  S   SPT  Q+      QK  + K  +E +   D  N +   L
Sbjct: 3627 LATSGGQSPTGEQIPQFQQRQKELK-KEVMEHRLVLDTVNEVSRAL 3671


>gi|4507709 tissue specific transplantation antigen P35B [Homo
           sapiens]
          Length = 321

 Score = 28.9 bits (63), Expect = 4.5
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 119 SEGRHPRSLMGKNFRSYLLDLRNTSTPFKGVRKALIDTLLDGYETAR 165
           S+G+  ++      R+YL D R   TPFK   K       D YE AR
Sbjct: 276 SDGQFKKTASNSKLRTYLPDFR--FTPFKQAVKETCAWFTDNYEQAR 320


>gi|156231355 nuclear receptor binding factor 2 [Homo sapiens]
          Length = 287

 Score = 28.1 bits (61), Expect = 7.7
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 38  FAMKSRRGPHVP-VGHNAPKDLKEEIDIRLSRVQDIKYEPQLLADDDARL 86
           + ++ +  P  P +G  APKD K  I+ + +++ D+K   + L  ++ RL
Sbjct: 143 YLLQQKSEPAEPCIGSKAPKDDKTIIEEQATKIADLKRHVEFLVAENERL 192


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.133    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,657,873
Number of Sequences: 37866
Number of extensions: 348040
Number of successful extensions: 956
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 946
Number of HSP's gapped (non-prelim): 19
length of query: 253
length of database: 18,247,518
effective HSP length: 100
effective length of query: 153
effective length of database: 14,460,918
effective search space: 2212520454
effective search space used: 2212520454
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.