Search of human proteins with 148596990

Search of human proteins with 148596990

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|148596990 cutC copper transporter homolog [Homo sapiens]
         (273 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|148596990 cutC copper transporter homolog [Homo sapiens]           533   e-152
gi|11415052 retinoid X receptor, beta [Homo sapiens]                   30   2.3  
gi|119943098 dihydropyrimidine dehydrogenase isoform 1 [Homo sap...    30   3.0  
gi|239756315 PREDICTED: hypothetical protein [Homo sapiens]            29   5.0  
gi|239750850 PREDICTED: hypothetical protein XP_002347579 [Homo ...    29   5.0  
gi|239745213 PREDICTED: hypothetical protein XP_002343410 [Homo ...    29   5.0  
gi|4827022 contactin 2 precursor [Homo sapiens]                        28   8.6  

>gi|148596990 cutC copper transporter homolog [Homo sapiens]
          Length = 273

 Score =  533 bits (1373), Expect = e-152
 Identities = 273/273 (100%), Positives = 273/273 (100%)

Query: 1   MKRQGASSERKRARIPSGKAGAANGFLMEVCVDSVESAVNAERGGADRIELCSGLSEGGT 60
           MKRQGASSERKRARIPSGKAGAANGFLMEVCVDSVESAVNAERGGADRIELCSGLSEGGT
Sbjct: 1   MKRQGASSERKRARIPSGKAGAANGFLMEVCVDSVESAVNAERGGADRIELCSGLSEGGT 60

Query: 61  TPSMGVLQVVKQSVQIPVFVMIRPRGGDFLYSDREIEVMKADIRLAKLYGADGLVFGALT 120
           TPSMGVLQVVKQSVQIPVFVMIRPRGGDFLYSDREIEVMKADIRLAKLYGADGLVFGALT
Sbjct: 61  TPSMGVLQVVKQSVQIPVFVMIRPRGGDFLYSDREIEVMKADIRLAKLYGADGLVFGALT 120

Query: 121 EDGHIDKELCMSLMAICRPLPVTFHRAFDMVHDPMAALETLLTLGFERVLTSGCDSSALE 180
           EDGHIDKELCMSLMAICRPLPVTFHRAFDMVHDPMAALETLLTLGFERVLTSGCDSSALE
Sbjct: 121 EDGHIDKELCMSLMAICRPLPVTFHRAFDMVHDPMAALETLLTLGFERVLTSGCDSSALE 180

Query: 181 GLPLIKRLIEQAKGRIVVMPGGGITDRNLQRILEGSGATEFHCSARSTRDSGMKFRNSSV 240
           GLPLIKRLIEQAKGRIVVMPGGGITDRNLQRILEGSGATEFHCSARSTRDSGMKFRNSSV
Sbjct: 181 GLPLIKRLIEQAKGRIVVMPGGGITDRNLQRILEGSGATEFHCSARSTRDSGMKFRNSSV 240

Query: 241 AMGASLSCSEYSLKVTDVTKVRTLNAIAKNILV 273
           AMGASLSCSEYSLKVTDVTKVRTLNAIAKNILV
Sbjct: 241 AMGASLSCSEYSLKVTDVTKVRTLNAIAKNILV 273


>gi|11415052 retinoid X receptor, beta [Homo sapiens]
          Length = 533

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 2/83 (2%)

Query: 1   MKRQGASSERKRARIPSGKAGAANGFLMEVCVDSV-ESAVNAERGGADRIELCSGLSEGG 59
           MKR+    ER+R +   G    A G   E+ VD + E+ +  E+     +E   G    G
Sbjct: 270 MKREAVQEERQRGKDKDGDGEGAGGAPEEMPVDRILEAELAVEQKSDQGVEGPGGTGGSG 329

Query: 60  TTPSMGVLQVVKQSVQIPVFVMI 82
           ++P+  V  +  Q+    +F ++
Sbjct: 330 SSPNDPVTNIC-QAADKQLFTLV 351


>gi|119943098 dihydropyrimidine dehydrogenase isoform 1 [Homo
           sapiens]
          Length = 1025

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 22/94 (23%)

Query: 33  DSVESAVNAERGGADRIEL---CS-GLSEGGTTPSMG--------VLQVVKQSVQIPVFV 80
           D  E A  +E  GAD +EL   C  G+ E G   + G        + + V+Q+VQIP F 
Sbjct: 649 DWTELAKKSEDSGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFA 708

Query: 81  MIRPRGGDFLYSDREIEVMKADIRLAKLYGADGL 114
            + P   D +          +  R AK  GA+G+
Sbjct: 709 KLTPNVTDIV----------SIARAAKEGGANGV 732


>gi|239756315 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 143

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 5/40 (12%)

Query: 53 SGLSEGGTTPSMGVLQV-----VKQSVQIPVFVMIRPRGG 87
          SG +EGGTTP+    QV     VK+ V+  V   +R +GG
Sbjct: 30 SGRAEGGTTPAFPRAQVSQWSQVKKEVKTGVAARVRRQGG 69


>gi|239750850 PREDICTED: hypothetical protein XP_002347579 [Homo
          sapiens]
          Length = 143

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 5/40 (12%)

Query: 53 SGLSEGGTTPSMGVLQV-----VKQSVQIPVFVMIRPRGG 87
          SG +EGGTTP+    QV     VK+ V+  V   +R +GG
Sbjct: 30 SGRAEGGTTPAFPRAQVSQWSQVKKEVKTGVAARVRRQGG 69


>gi|239745213 PREDICTED: hypothetical protein XP_002343410 [Homo
          sapiens]
          Length = 143

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 5/40 (12%)

Query: 53 SGLSEGGTTPSMGVLQV-----VKQSVQIPVFVMIRPRGG 87
          SG +EGGTTP+    QV     VK+ V+  V   +R +GG
Sbjct: 30 SGRAEGGTTPAFPRAQVSQWSQVKKEVKTGVAARVRRQGG 69


>gi|4827022 contactin 2 precursor [Homo sapiens]
          Length = 1040

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 85  RGGDFLYSDREIEVMKADIRLAKLYGADGLVFGALTEDGH 124
           R G+ L S   +EV+  D+R +KL   D  ++  + E+ H
Sbjct: 362 RNGEPLASQNRVEVLAGDLRFSKLSLEDSGMYQCVAENKH 401


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,294,930
Number of Sequences: 37866
Number of extensions: 382726
Number of successful extensions: 752
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 747
Number of HSP's gapped (non-prelim): 9
length of query: 273
length of database: 18,247,518
effective HSP length: 101
effective length of query: 172
effective length of database: 14,423,052
effective search space: 2480764944
effective search space used: 2480764944
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.