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Search of human proteins with 148596970
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|148596970 zinc finger protein 365 isoform D [Homo sapiens]
(216 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|148596970 zinc finger protein 365 isoform D [Homo sapiens] 453 e-128
gi|40789306 zinc finger protein 365 isoform C [Homo sapiens] 181 3e-46
gi|239757412 PREDICTED: hypothetical protein XP_002345272 [Homo ... 30 1.6
gi|153945765 mitogen-activated protein kinase kinase kinase 1 [H... 30 2.0
gi|75677612 leucine rich repeat containing 37, member A3 [Homo s... 29 3.5
gi|126012562 low density lipoprotein-related protein 1 [Homo sap... 28 4.5
gi|239740955 PREDICTED: similar to c114 SLIT-like testicular pro... 28 4.5
gi|239740953 PREDICTED: similar to c114 SLIT-like testicular pro... 28 4.5
gi|116325993 c114 SLIT-like testicular protein [Homo sapiens] 28 4.5
gi|110665701 leucine rich repeat containing 37A [Homo sapiens] 28 4.5
gi|110624774 mannose receptor, C type 2 [Homo sapiens] 28 7.8
>gi|148596970 zinc finger protein 365 isoform D [Homo sapiens]
Length = 216
Score = 453 bits (1165), Expect = e-128
Identities = 216/216 (100%), Positives = 216/216 (100%)
Query: 1 MSALGQITITVSRCWNTERNQTDKNPCLHGAYLQLRETVKNKSTHLKKPLMKQAPPWKDH 60
MSALGQITITVSRCWNTERNQTDKNPCLHGAYLQLRETVKNKSTHLKKPLMKQAPPWKDH
Sbjct: 1 MSALGQITITVSRCWNTERNQTDKNPCLHGAYLQLRETVKNKSTHLKKPLMKQAPPWKDH 60
Query: 61 LTFQPLHPAERKTQVWRWQSGNSSDLETTSSASPWPTGSNRDVVLNTLAESCCGLSELIT 120
LTFQPLHPAERKTQVWRWQSGNSSDLETTSSASPWPTGSNRDVVLNTLAESCCGLSELIT
Sbjct: 61 LTFQPLHPAERKTQVWRWQSGNSSDLETTSSASPWPTGSNRDVVLNTLAESCCGLSELIT 120
Query: 121 APPYAGVSIQGFSQIWVLFPFCGGTFHHNEKDVLGLQDFERESVSTSQSRNISLLTLGQL 180
APPYAGVSIQGFSQIWVLFPFCGGTFHHNEKDVLGLQDFERESVSTSQSRNISLLTLGQL
Sbjct: 121 APPYAGVSIQGFSQIWVLFPFCGGTFHHNEKDVLGLQDFERESVSTSQSRNISLLTLGQL 180
Query: 181 QNCVIGKLTIIDLLTEHLLGVRHGVICFPWGLPSSS 216
QNCVIGKLTIIDLLTEHLLGVRHGVICFPWGLPSSS
Sbjct: 181 QNCVIGKLTIIDLLTEHLLGVRHGVICFPWGLPSSS 216
>gi|40789306 zinc finger protein 365 isoform C [Homo sapiens]
Length = 462
Score = 181 bits (460), Expect = 3e-46
Identities = 87/95 (91%), Positives = 89/95 (93%)
Query: 122 PPYAGVSIQGFSQIWVLFPFCGGTFHHNEKDVLGLQDFERESVSTSQSRNISLLTLGQLQ 181
P + + GFSQIWVLFPFCGGTFHHNEKDVLGLQDFERESVSTSQSRNISLLTLGQLQ
Sbjct: 368 PWTSSTATAGFSQIWVLFPFCGGTFHHNEKDVLGLQDFERESVSTSQSRNISLLTLGQLQ 427
Query: 182 NCVIGKLTIIDLLTEHLLGVRHGVICFPWGLPSSS 216
NCVIGKLTIIDLLTEHLLGVRHGVICFPWGLPSSS
Sbjct: 428 NCVIGKLTIIDLLTEHLLGVRHGVICFPWGLPSSS 462
>gi|239757412 PREDICTED: hypothetical protein XP_002345272 [Homo
sapiens]
Length = 564
Score = 30.0 bits (66), Expect = 1.6
Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 50 LMKQAPPWKDHLTFQPLHP---AERKTQVWRWQSGNSSDLETTSSASPWPTGSNRD 102
L Q P W DHL +P P A R RW L+ + W +R+
Sbjct: 425 LFPQTPQWDDHLKARPHWPQMKARRPVCTLRWICSREERLKALGQSGHWSRDDHRN 480
>gi|153945765 mitogen-activated protein kinase kinase kinase 1 [Homo
sapiens]
Length = 1512
Score = 29.6 bits (65), Expect = 2.0
Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 12/120 (10%)
Query: 80 SGNSSDLETTSSASPWPTGSNRDVVLNTLAESCCGLSELITAPPYAGVSIQGFSQIWVLF 139
+GNS +S + +GS++ + + E+CC + ++ A P V + + +
Sbjct: 603 TGNSGGSSGSSPSGGATSGSSQTSISGDVVEACCSVLSMVCADPVYKVYVAALKTLRAML 662
Query: 140 PFCGGTFHHNEKDVLGLQDFERESVST---------SQSRNISLLTLGQLQNCVIGKLTI 190
+ T H+ + + LQ + V T S++ +S+ TL +L G+L +
Sbjct: 663 VY---TPCHSLAERIKLQRLLQPVVDTILVKCADANSRTSQLSISTLLELCKGQAGELAV 719
>gi|75677612 leucine rich repeat containing 37, member A3 [Homo
sapiens]
Length = 1634
Score = 28.9 bits (63), Expect = 3.5
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 6 QITITVSRCWNTERNQTDKNPCLHGAYLQLRETVKNKSTHLKKPLMKQAPPWKDHLTF-- 63
++TIT + N+T+ + +Q E V+ +T + P+ PP + L+
Sbjct: 305 EVTIT-----SEPTNETESSQAQQETPIQFPEEVEPSATQQEAPIEPPVPPMEHELSISE 359
Query: 64 --QPLHPAERKTQV 75
QP+ P+E +V
Sbjct: 360 QQQPVQPSESSREV 373
>gi|126012562 low density lipoprotein-related protein 1 [Homo
sapiens]
Length = 4544
Score = 28.5 bits (62), Expect = 4.5
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 34 QLRET-VKNKSTHLKKPLMKQAPPWKDHLTFQPLHPAERKTQVWR-WQSGNSSDLETTSS 91
Q R+T ++ K TH + ++ W ++ R+ ++ R W G+ D+ TS
Sbjct: 637 QTRKTLIEGKMTHPRAIVVDPLNGWMYWTDWEEDPKDSRRGRLERAWMDGSHRDIFVTSK 696
Query: 92 ASPWPTGSNRDV 103
WP G + D+
Sbjct: 697 TVLWPNGLSLDI 708
>gi|239740955 PREDICTED: similar to c114 SLIT-like testicular
protein isoform 1 [Homo sapiens]
Length = 1635
Score = 28.5 bits (62), Expect = 4.5
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 6 QITITVSRCWNTERNQTDKNPCLHGAYLQLRETVKNKSTHLKKPLMKQAPPWKDHLTF-- 63
++TIT + N+T+ + +Q E V+ +T + P+ PP + L+
Sbjct: 305 EVTIT-----SEPTNETESSQAQQETPIQFPEEVEPSATQQEAPIEPPVPPMEHELSISE 359
Query: 64 --QPLHPAERKTQV 75
QP+ P+E +V
Sbjct: 360 QQQPVQPSESPREV 373
>gi|239740953 PREDICTED: similar to c114 SLIT-like testicular
protein isoform 2 [Homo sapiens]
Length = 1700
Score = 28.5 bits (62), Expect = 4.5
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 6 QITITVSRCWNTERNQTDKNPCLHGAYLQLRETVKNKSTHLKKPLMKQAPPWKDHLTF-- 63
++TIT + N+T+ + +Q E V+ +T + P+ PP + L+
Sbjct: 305 EVTIT-----SEPTNETESSQAQQETPIQFPEEVEPSATQQEAPIEPPVPPMEHELSISE 359
Query: 64 --QPLHPAERKTQV 75
QP+ P+E +V
Sbjct: 360 QQQPVQPSESPREV 373
>gi|116325993 c114 SLIT-like testicular protein [Homo sapiens]
Length = 1700
Score = 28.5 bits (62), Expect = 4.5
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 6 QITITVSRCWNTERNQTDKNPCLHGAYLQLRETVKNKSTHLKKPLMKQAPPWKDHLTF-- 63
++TIT + N+T+ + +Q E V+ +T + P+ PP + L+
Sbjct: 305 EVTIT-----SEPTNETESSQAQQETPIQFPEEVEPSATQQEAPIEPPVPPMEHELSISE 359
Query: 64 --QPLHPAERKTQV 75
QP+ P+E +V
Sbjct: 360 QQQPVQPSESPREV 373
>gi|110665701 leucine rich repeat containing 37A [Homo sapiens]
Length = 1700
Score = 28.5 bits (62), Expect = 4.5
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 6 QITITVSRCWNTERNQTDKNPCLHGAYLQLRETVKNKSTHLKKPLMKQAPPWKDHLTF-- 63
++TIT + N+T+ + +Q E V+ +T + P+ PP + L+
Sbjct: 305 EVTIT-----SEPTNETESSQAQQETPIQFPEEVEPSATQQEAPIEPPVPPMEHELSISE 359
Query: 64 --QPLHPAERKTQV 75
QP+ P+E +V
Sbjct: 360 QQQPVQPSESPREV 373
>gi|110624774 mannose receptor, C type 2 [Homo sapiens]
Length = 1479
Score = 27.7 bits (60), Expect = 7.8
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 66 LHPAERKTQVWRWQSGNSSDLETTSSASPWPTGSNRDVVLNTLAESCCGLSELITAPPY 124
LH +E + +RW G+ + + + P P G ++ V T + G +TA PY
Sbjct: 891 LHTSESDGR-FRWTDGSIINFISWAPGKPRPVGKDKKCVYMTASREDWGDQRCLTALPY 948
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,817,045
Number of Sequences: 37866
Number of extensions: 375066
Number of successful extensions: 996
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 994
Number of HSP's gapped (non-prelim): 11
length of query: 216
length of database: 18,247,518
effective HSP length: 98
effective length of query: 118
effective length of database: 14,536,650
effective search space: 1715324700
effective search space used: 1715324700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.