Guide to the Human Genome
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Search of human proteins with 148229981

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|148229981 X antigen family member 1E isoform 3 [Homo
sapiens]
         (69 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|147902978 X antigen family, member 1C isoform 3 [Homo sapiens]     140   2e-34
gi|148233064 X antigen family, member 1B isoform 3 [Homo sapiens]     140   2e-34
gi|148229995 X antigen family, member 1 isoform 3 [Homo sapiens]      140   2e-34
gi|19747279 X antigen family, member 1D isoform 1d [Homo sapiens]     140   2e-34
gi|148229981 X antigen family member 1E isoform 3 [Homo sapiens]      140   2e-34
gi|148228925 X antigen family, member 1C isoform 1 [Homo sapiens]      65   1e-11
gi|19747281 X antigen family, member 1D isoform 1c [Homo sapiens]      65   1e-11
gi|9966899 X antigen family, member 1D isoform 1a [Homo sapiens]       65   1e-11
gi|147906278 X antigen family, member 1C isoform 2 [Homo sapiens]      65   1e-11
gi|148225604 X antigen family, member 1B isoform 1 [Homo sapiens]      65   1e-11
gi|148232092 X antigen family, member 1B isoform 2 [Homo sapiens]      65   1e-11
gi|147900714 X antigen family, member 1 isoform 2 [Homo sapiens]       65   1e-11
gi|148231153 X antigen family, member 1 isoform 1 [Homo sapiens]       65   1e-11
gi|147903922 X antigen family member 1E isoform 2 [Homo sapiens]       65   1e-11
gi|148229505 X antigen family member 1E isoform 1 [Homo sapiens]       65   1e-11
gi|19747271 XAGE-3 protein [Homo sapiens]                              31   0.18 
gi|19747269 XAGE-3 protein [Homo sapiens]                              31   0.18 
gi|19747273 X antigen family, member 5 [Homo sapiens]                  29   0.70 
gi|118601000 X antigen family, member 2-like [Homo sapiens]            27   3.5  
gi|19747283 XAGE-2 protein [Homo sapiens]                              27   3.5  
gi|122937474 glutaredoxin, cysteine rich 2 [Homo sapiens]              27   3.5  
gi|156546910 BRAF35/HDAC2 complex isoform b [Homo sapiens]             27   4.5  
gi|156546894 BRAF35/HDAC2 complex isoform a [Homo sapiens]             27   4.5  
gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens]         27   4.5  
gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens]         27   4.5  
gi|22035558 transcription initiation factor IIIB isoform 3 [Homo...    26   5.9  
gi|22035556 transcription initiation factor IIIB isoform 1 [Homo...    26   5.9  
gi|18375650 protein tyrosine phosphatase, non-receptor type 13 i...    26   7.7  
gi|18375646 protein tyrosine phosphatase, non-receptor type 13 i...    26   7.7  
gi|5453992 protein tyrosine phosphatase, non-receptor type 13 is...    26   7.7  

>gi|147902978 X antigen family, member 1C isoform 3 [Homo sapiens]
          Length = 69

 Score =  140 bits (353), Expect = 2e-34
 Identities = 69/69 (100%), Positives = 69/69 (100%)

Query: 1  MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQVLGREMRDMEGDLQELHQSNTGDKSGFG 60
          MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQVLGREMRDMEGDLQELHQSNTGDKSGFG
Sbjct: 1  MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQVLGREMRDMEGDLQELHQSNTGDKSGFG 60

Query: 61 FRRQGEDNT 69
          FRRQGEDNT
Sbjct: 61 FRRQGEDNT 69


>gi|148233064 X antigen family, member 1B isoform 3 [Homo sapiens]
          Length = 69

 Score =  140 bits (353), Expect = 2e-34
 Identities = 69/69 (100%), Positives = 69/69 (100%)

Query: 1  MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQVLGREMRDMEGDLQELHQSNTGDKSGFG 60
          MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQVLGREMRDMEGDLQELHQSNTGDKSGFG
Sbjct: 1  MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQVLGREMRDMEGDLQELHQSNTGDKSGFG 60

Query: 61 FRRQGEDNT 69
          FRRQGEDNT
Sbjct: 61 FRRQGEDNT 69


>gi|148229995 X antigen family, member 1 isoform 3 [Homo sapiens]
          Length = 69

 Score =  140 bits (353), Expect = 2e-34
 Identities = 69/69 (100%), Positives = 69/69 (100%)

Query: 1  MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQVLGREMRDMEGDLQELHQSNTGDKSGFG 60
          MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQVLGREMRDMEGDLQELHQSNTGDKSGFG
Sbjct: 1  MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQVLGREMRDMEGDLQELHQSNTGDKSGFG 60

Query: 61 FRRQGEDNT 69
          FRRQGEDNT
Sbjct: 61 FRRQGEDNT 69


>gi|19747279 X antigen family, member 1D isoform 1d [Homo sapiens]
          Length = 69

 Score =  140 bits (353), Expect = 2e-34
 Identities = 69/69 (100%), Positives = 69/69 (100%)

Query: 1  MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQVLGREMRDMEGDLQELHQSNTGDKSGFG 60
          MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQVLGREMRDMEGDLQELHQSNTGDKSGFG
Sbjct: 1  MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQVLGREMRDMEGDLQELHQSNTGDKSGFG 60

Query: 61 FRRQGEDNT 69
          FRRQGEDNT
Sbjct: 61 FRRQGEDNT 69


>gi|148229981 X antigen family member 1E isoform 3 [Homo sapiens]
          Length = 69

 Score =  140 bits (353), Expect = 2e-34
 Identities = 69/69 (100%), Positives = 69/69 (100%)

Query: 1  MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQVLGREMRDMEGDLQELHQSNTGDKSGFG 60
          MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQVLGREMRDMEGDLQELHQSNTGDKSGFG
Sbjct: 1  MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQVLGREMRDMEGDLQELHQSNTGDKSGFG 60

Query: 61 FRRQGEDNT 69
          FRRQGEDNT
Sbjct: 61 FRRQGEDNT 69


>gi|148228925 X antigen family, member 1C isoform 1 [Homo sapiens]
          Length = 160

 Score = 65.1 bits (157), Expect = 1e-11
 Identities = 32/32 (100%), Positives = 32/32 (100%)

Query: 1   MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ 32
           MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ
Sbjct: 80  MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ 111


>gi|19747281 X antigen family, member 1D isoform 1c [Homo sapiens]
          Length = 160

 Score = 65.1 bits (157), Expect = 1e-11
 Identities = 32/32 (100%), Positives = 32/32 (100%)

Query: 1   MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ 32
           MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ
Sbjct: 80  MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ 111


>gi|9966899 X antigen family, member 1D isoform 1a [Homo sapiens]
          Length = 146

 Score = 65.1 bits (157), Expect = 1e-11
 Identities = 32/32 (100%), Positives = 32/32 (100%)

Query: 1  MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ 32
          MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ
Sbjct: 66 MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ 97


>gi|147906278 X antigen family, member 1C isoform 2 [Homo sapiens]
          Length = 146

 Score = 65.1 bits (157), Expect = 1e-11
 Identities = 32/32 (100%), Positives = 32/32 (100%)

Query: 1  MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ 32
          MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ
Sbjct: 66 MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ 97


>gi|148225604 X antigen family, member 1B isoform 1 [Homo sapiens]
          Length = 160

 Score = 65.1 bits (157), Expect = 1e-11
 Identities = 32/32 (100%), Positives = 32/32 (100%)

Query: 1   MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ 32
           MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ
Sbjct: 80  MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ 111


>gi|148232092 X antigen family, member 1B isoform 2 [Homo sapiens]
          Length = 146

 Score = 65.1 bits (157), Expect = 1e-11
 Identities = 32/32 (100%), Positives = 32/32 (100%)

Query: 1  MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ 32
          MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ
Sbjct: 66 MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ 97


>gi|147900714 X antigen family, member 1 isoform 2 [Homo sapiens]
          Length = 146

 Score = 65.1 bits (157), Expect = 1e-11
 Identities = 32/32 (100%), Positives = 32/32 (100%)

Query: 1  MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ 32
          MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ
Sbjct: 66 MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ 97


>gi|148231153 X antigen family, member 1 isoform 1 [Homo sapiens]
          Length = 160

 Score = 65.1 bits (157), Expect = 1e-11
 Identities = 32/32 (100%), Positives = 32/32 (100%)

Query: 1   MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ 32
           MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ
Sbjct: 80  MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ 111


>gi|147903922 X antigen family member 1E isoform 2 [Homo sapiens]
          Length = 146

 Score = 65.1 bits (157), Expect = 1e-11
 Identities = 32/32 (100%), Positives = 32/32 (100%)

Query: 1  MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ 32
          MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ
Sbjct: 66 MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ 97


>gi|148229505 X antigen family member 1E isoform 1 [Homo sapiens]
          Length = 160

 Score = 65.1 bits (157), Expect = 1e-11
 Identities = 32/32 (100%), Positives = 32/32 (100%)

Query: 1   MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ 32
           MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ
Sbjct: 80  MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ 111


>gi|19747271 XAGE-3 protein [Homo sapiens]
          Length = 111

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 15/30 (50%), Positives = 20/30 (66%)

Query: 37 EMRDMEGDLQELHQSNTGDKSGFGFRRQGE 66
          ++ D+E DLQEL QS TG + G G   QG+
Sbjct: 62 QVPDLEADLQELSQSKTGGECGNGPDDQGK 91


>gi|19747269 XAGE-3 protein [Homo sapiens]
          Length = 111

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 15/30 (50%), Positives = 20/30 (66%)

Query: 37 EMRDMEGDLQELHQSNTGDKSGFGFRRQGE 66
          ++ D+E DLQEL QS TG + G G   QG+
Sbjct: 62 QVPDLEADLQELSQSKTGGECGNGPDDQGK 91


>gi|19747273 X antigen family, member 5 [Homo sapiens]
          Length = 108

 Score = 29.3 bits (64), Expect = 0.70
 Identities = 12/22 (54%), Positives = 17/22 (77%)

Query: 37 EMRDMEGDLQELHQSNTGDKSG 58
          ++ ++E DLQEL QS TGD+ G
Sbjct: 59 QVPNLEADLQELSQSKTGDECG 80


>gi|118601000 X antigen family, member 2-like [Homo sapiens]
          Length = 111

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 11/19 (57%), Positives = 15/19 (78%)

Query: 37 EMRDMEGDLQELHQSNTGD 55
          ++ D+E DLQEL Q+ TGD
Sbjct: 62 QVPDLEADLQELCQTKTGD 80


>gi|19747283 XAGE-2 protein [Homo sapiens]
          Length = 111

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 11/19 (57%), Positives = 15/19 (78%)

Query: 37 EMRDMEGDLQELHQSNTGD 55
          ++ D+E DLQEL Q+ TGD
Sbjct: 62 QVPDLEADLQELCQTKTGD 80


>gi|122937474 glutaredoxin, cysteine rich 2 [Homo sapiens]
          Length = 248

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 6/48 (12%)

Query: 1  MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQVLGREMRDMEGDLQEL 48
          ME P+KK  Q   G      + +K+R ++ S   GR ++ +  D QEL
Sbjct: 1  MEDPEKKLNQKSDG------KPRKVRFKISSSYSGRVLKQVFEDGQEL 42


>gi|156546910 BRAF35/HDAC2 complex isoform b [Homo sapiens]
          Length = 634

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 14/47 (29%), Positives = 27/47 (57%)

Query: 5  KKKNQQLKVGILHLGSRQKKIRIQLRSQVLGREMRDMEGDLQELHQS 51
          KK+  +L+  I  L  +QK++  QLR  ++ ++ +  +  +Q L QS
Sbjct: 34 KKQLHELQAKITALSEKQKRVVEQLRKNLIVKQEQPDKFQIQPLPQS 80


>gi|156546894 BRAF35/HDAC2 complex isoform a [Homo sapiens]
          Length = 680

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 14/47 (29%), Positives = 27/47 (57%)

Query: 5  KKKNQQLKVGILHLGSRQKKIRIQLRSQVLGREMRDMEGDLQELHQS 51
          KK+  +L+  I  L  +QK++  QLR  ++ ++ +  +  +Q L QS
Sbjct: 34 KKQLHELQAKITALSEKQKRVVEQLRKNLIVKQEQPDKFQIQPLPQS 80


>gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens]
          Length = 3907

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 10/26 (38%), Positives = 20/26 (76%)

Query: 22  QKKIRIQLRSQVLGREMRDMEGDLQE 47
           Q+   +QL++++L ++M++ E DLQE
Sbjct: 743 QEVQELQLKTELLEKQMKEKENDLQE 768


>gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens]
          Length = 3899

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 10/26 (38%), Positives = 20/26 (76%)

Query: 22  QKKIRIQLRSQVLGREMRDMEGDLQE 47
           Q+   +QL++++L ++M++ E DLQE
Sbjct: 743 QEVQELQLKTELLEKQMKEKENDLQE 768


>gi|22035558 transcription initiation factor IIIB isoform 3 [Homo
           sapiens]
          Length = 473

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 6/54 (11%)

Query: 22  QKKIRIQLRSQVLGREMRDMEGDLQ------ELHQSNTGDKSGFGFRRQGEDNT 69
           Q+K+R++   QVL +++ ++EG++       E+   N+  K+  G     +D +
Sbjct: 94  QRKLRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKAKGGLASLAKDGS 147


>gi|22035556 transcription initiation factor IIIB isoform 1 [Homo
           sapiens]
          Length = 677

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 6/54 (11%)

Query: 22  QKKIRIQLRSQVLGREMRDMEGDLQ------ELHQSNTGDKSGFGFRRQGEDNT 69
           Q+K+R++   QVL +++ ++EG++       E+   N+  K+  G     +D +
Sbjct: 298 QRKLRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKAKGGLASLAKDGS 351


>gi|18375650 protein tyrosine phosphatase, non-receptor type 13
           isoform 4 [Homo sapiens]
          Length = 2490

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 11/35 (31%), Positives = 23/35 (65%)

Query: 8   NQQLKVGILHLGSRQKKIRIQLRSQVLGREMRDME 42
           N ++   +LHL S Q K ++Q+R++   ++ +D+E
Sbjct: 850 NSKICQYLLHLCSYQHKFQLQMRARQSNQDAQDIE 884


>gi|18375646 protein tyrosine phosphatase, non-receptor type 13
           isoform 1 [Homo sapiens]
          Length = 2485

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 11/35 (31%), Positives = 23/35 (65%)

Query: 8   NQQLKVGILHLGSRQKKIRIQLRSQVLGREMRDME 42
           N ++   +LHL S Q K ++Q+R++   ++ +D+E
Sbjct: 850 NSKICQYLLHLCSYQHKFQLQMRARQSNQDAQDIE 884


>gi|5453992 protein tyrosine phosphatase, non-receptor type 13
           isoform 2 [Homo sapiens]
          Length = 2466

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 11/35 (31%), Positives = 23/35 (65%)

Query: 8   NQQLKVGILHLGSRQKKIRIQLRSQVLGREMRDME 42
           N ++   +LHL S Q K ++Q+R++   ++ +D+E
Sbjct: 850 NSKICQYLLHLCSYQHKFQLQMRARQSNQDAQDIE 884


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.133    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,589,897
Number of Sequences: 37866
Number of extensions: 84766
Number of successful extensions: 198
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 170
Number of HSP's gapped (non-prelim): 31
length of query: 69
length of database: 18,247,518
effective HSP length: 42
effective length of query: 27
effective length of database: 16,657,146
effective search space: 449742942
effective search space used: 449742942
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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