Guide to the Human Genome
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Name: XAGE1B Sequence: fasta or formatted (69aa) NCBI GI: 148233064
Description:

X antigen family, member 1B isoform 3

Referenced in:

Melanoma Antigen Family

Other entries for this name:
alt prot [160aa] X antigen family, member 1B isoform 1
alt prot [146aa] X antigen family, member 1B isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             0.0          0           0
 C cysteine            0.0          0           0
 D aspartate           5.8          4           1
 E glutamate           7.2          5           1
 F phenylalanine       2.9          2           1
 G glycine            11.6          8           1
 H histidine           2.9          2           1
 I isoleucine          4.3          3           1
 K lysine             10.1          7           3
 L leucine            10.1          7           1
 M methionine          4.3          3           1
 N asparagine          4.3          3           1
 P proline             1.4          1           1
 Q glutamine          11.6          8           2
 R arginine           10.1          7           2
 S serine              7.2          5           1
 T threonine           2.9          2           1
 V valine              2.9          2           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   X antigen family, member 1B isoform 3 
XAGE1C                1.000   X antigen family, member 1C isoform 3 
XAGE1A                1.000   X antigen family, member 1 isoform 3 
XAGE1D                1.000   X antigen family, member 1D isoform 1d 
XAGE1E                1.000   X antigen family member 1E isoform 3 
XAGE1C                0.348   X antigen family, member 1C isoform 1 
XAGE1D                0.348   X antigen family, member 1D isoform 1c 
XAGE1D                0.348   X antigen family, member 1D isoform 1a 
XAGE1C                0.348   X antigen family, member 1C isoform 2 
XAGE1B                0.348   X antigen family, member 1B isoform 1 
XAGE1B                0.348   X antigen family, member 1B isoform 2 
XAGE1A                0.348   X antigen family, member 1 isoform 2 
XAGE1A                0.348   X antigen family, member 1 isoform 1 
XAGE1E                0.348   X antigen family member 1E isoform 2 
XAGE1E                0.348   X antigen family member 1E isoform 1 
XAGE3                 0.052   XAGE-3 protein 
XAGE3                 0.052   XAGE-3 protein 
XAGE5                 0.035   X antigen family, member 5 
XAGE2B                0.017   X antigen family, member 2-like 
XAGE2                 0.017   XAGE-2 protein 
GRXCR2                0.017   glutaredoxin, cysteine rich 2 
PHF21A                0.017   BRAF35/HDAC2 complex isoform b 
PHF21A                0.017   BRAF35/HDAC2 complex isoform a 
AKAP9                 0.017   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.017   A-kinase anchor protein 9 isoform 3 
BRF1                  0.009   transcription initiation factor IIIB isoform 3 [Homo...
BRF1                  0.009   transcription initiation factor IIIB isoform 1 [Homo...
PTPN13                0.009   protein tyrosine phosphatase, non-receptor type 13 i...
PTPN13                0.009   protein tyrosine phosphatase, non-receptor type 13 i...
PTPN13                0.009   protein tyrosine phosphatase, non-receptor type 13 is...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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