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Search of human proteins with 147902978
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|147902978 X antigen family, member 1C isoform 3 [Homo
sapiens]
(69 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|147902978 X antigen family, member 1C isoform 3 [Homo sapiens] 140 2e-34
gi|148233064 X antigen family, member 1B isoform 3 [Homo sapiens] 140 2e-34
gi|148229995 X antigen family, member 1 isoform 3 [Homo sapiens] 140 2e-34
gi|19747279 X antigen family, member 1D isoform 1d [Homo sapiens] 140 2e-34
gi|148229981 X antigen family member 1E isoform 3 [Homo sapiens] 140 2e-34
gi|148228925 X antigen family, member 1C isoform 1 [Homo sapiens] 65 1e-11
gi|19747281 X antigen family, member 1D isoform 1c [Homo sapiens] 65 1e-11
gi|9966899 X antigen family, member 1D isoform 1a [Homo sapiens] 65 1e-11
gi|147906278 X antigen family, member 1C isoform 2 [Homo sapiens] 65 1e-11
gi|148225604 X antigen family, member 1B isoform 1 [Homo sapiens] 65 1e-11
gi|148232092 X antigen family, member 1B isoform 2 [Homo sapiens] 65 1e-11
gi|147900714 X antigen family, member 1 isoform 2 [Homo sapiens] 65 1e-11
gi|148231153 X antigen family, member 1 isoform 1 [Homo sapiens] 65 1e-11
gi|147903922 X antigen family member 1E isoform 2 [Homo sapiens] 65 1e-11
gi|148229505 X antigen family member 1E isoform 1 [Homo sapiens] 65 1e-11
gi|19747271 XAGE-3 protein [Homo sapiens] 31 0.18
gi|19747269 XAGE-3 protein [Homo sapiens] 31 0.18
gi|19747273 X antigen family, member 5 [Homo sapiens] 29 0.70
gi|118601000 X antigen family, member 2-like [Homo sapiens] 27 3.5
gi|19747283 XAGE-2 protein [Homo sapiens] 27 3.5
gi|122937474 glutaredoxin, cysteine rich 2 [Homo sapiens] 27 3.5
gi|156546910 BRAF35/HDAC2 complex isoform b [Homo sapiens] 27 4.5
gi|156546894 BRAF35/HDAC2 complex isoform a [Homo sapiens] 27 4.5
gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens] 27 4.5
gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens] 27 4.5
gi|22035558 transcription initiation factor IIIB isoform 3 [Homo... 26 5.9
gi|22035556 transcription initiation factor IIIB isoform 1 [Homo... 26 5.9
gi|18375650 protein tyrosine phosphatase, non-receptor type 13 i... 26 7.7
gi|18375646 protein tyrosine phosphatase, non-receptor type 13 i... 26 7.7
gi|5453992 protein tyrosine phosphatase, non-receptor type 13 is... 26 7.7
>gi|147902978 X antigen family, member 1C isoform 3 [Homo sapiens]
Length = 69
Score = 140 bits (353), Expect = 2e-34
Identities = 69/69 (100%), Positives = 69/69 (100%)
Query: 1 MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQVLGREMRDMEGDLQELHQSNTGDKSGFG 60
MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQVLGREMRDMEGDLQELHQSNTGDKSGFG
Sbjct: 1 MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQVLGREMRDMEGDLQELHQSNTGDKSGFG 60
Query: 61 FRRQGEDNT 69
FRRQGEDNT
Sbjct: 61 FRRQGEDNT 69
>gi|148233064 X antigen family, member 1B isoform 3 [Homo sapiens]
Length = 69
Score = 140 bits (353), Expect = 2e-34
Identities = 69/69 (100%), Positives = 69/69 (100%)
Query: 1 MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQVLGREMRDMEGDLQELHQSNTGDKSGFG 60
MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQVLGREMRDMEGDLQELHQSNTGDKSGFG
Sbjct: 1 MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQVLGREMRDMEGDLQELHQSNTGDKSGFG 60
Query: 61 FRRQGEDNT 69
FRRQGEDNT
Sbjct: 61 FRRQGEDNT 69
>gi|148229995 X antigen family, member 1 isoform 3 [Homo sapiens]
Length = 69
Score = 140 bits (353), Expect = 2e-34
Identities = 69/69 (100%), Positives = 69/69 (100%)
Query: 1 MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQVLGREMRDMEGDLQELHQSNTGDKSGFG 60
MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQVLGREMRDMEGDLQELHQSNTGDKSGFG
Sbjct: 1 MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQVLGREMRDMEGDLQELHQSNTGDKSGFG 60
Query: 61 FRRQGEDNT 69
FRRQGEDNT
Sbjct: 61 FRRQGEDNT 69
>gi|19747279 X antigen family, member 1D isoform 1d [Homo sapiens]
Length = 69
Score = 140 bits (353), Expect = 2e-34
Identities = 69/69 (100%), Positives = 69/69 (100%)
Query: 1 MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQVLGREMRDMEGDLQELHQSNTGDKSGFG 60
MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQVLGREMRDMEGDLQELHQSNTGDKSGFG
Sbjct: 1 MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQVLGREMRDMEGDLQELHQSNTGDKSGFG 60
Query: 61 FRRQGEDNT 69
FRRQGEDNT
Sbjct: 61 FRRQGEDNT 69
>gi|148229981 X antigen family member 1E isoform 3 [Homo sapiens]
Length = 69
Score = 140 bits (353), Expect = 2e-34
Identities = 69/69 (100%), Positives = 69/69 (100%)
Query: 1 MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQVLGREMRDMEGDLQELHQSNTGDKSGFG 60
MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQVLGREMRDMEGDLQELHQSNTGDKSGFG
Sbjct: 1 MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQVLGREMRDMEGDLQELHQSNTGDKSGFG 60
Query: 61 FRRQGEDNT 69
FRRQGEDNT
Sbjct: 61 FRRQGEDNT 69
>gi|148228925 X antigen family, member 1C isoform 1 [Homo sapiens]
Length = 160
Score = 65.1 bits (157), Expect = 1e-11
Identities = 32/32 (100%), Positives = 32/32 (100%)
Query: 1 MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ 32
MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ
Sbjct: 80 MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ 111
>gi|19747281 X antigen family, member 1D isoform 1c [Homo sapiens]
Length = 160
Score = 65.1 bits (157), Expect = 1e-11
Identities = 32/32 (100%), Positives = 32/32 (100%)
Query: 1 MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ 32
MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ
Sbjct: 80 MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ 111
>gi|9966899 X antigen family, member 1D isoform 1a [Homo sapiens]
Length = 146
Score = 65.1 bits (157), Expect = 1e-11
Identities = 32/32 (100%), Positives = 32/32 (100%)
Query: 1 MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ 32
MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ
Sbjct: 66 MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ 97
>gi|147906278 X antigen family, member 1C isoform 2 [Homo sapiens]
Length = 146
Score = 65.1 bits (157), Expect = 1e-11
Identities = 32/32 (100%), Positives = 32/32 (100%)
Query: 1 MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ 32
MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ
Sbjct: 66 MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ 97
>gi|148225604 X antigen family, member 1B isoform 1 [Homo sapiens]
Length = 160
Score = 65.1 bits (157), Expect = 1e-11
Identities = 32/32 (100%), Positives = 32/32 (100%)
Query: 1 MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ 32
MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ
Sbjct: 80 MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ 111
>gi|148232092 X antigen family, member 1B isoform 2 [Homo sapiens]
Length = 146
Score = 65.1 bits (157), Expect = 1e-11
Identities = 32/32 (100%), Positives = 32/32 (100%)
Query: 1 MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ 32
MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ
Sbjct: 66 MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ 97
>gi|147900714 X antigen family, member 1 isoform 2 [Homo sapiens]
Length = 146
Score = 65.1 bits (157), Expect = 1e-11
Identities = 32/32 (100%), Positives = 32/32 (100%)
Query: 1 MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ 32
MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ
Sbjct: 66 MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ 97
>gi|148231153 X antigen family, member 1 isoform 1 [Homo sapiens]
Length = 160
Score = 65.1 bits (157), Expect = 1e-11
Identities = 32/32 (100%), Positives = 32/32 (100%)
Query: 1 MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ 32
MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ
Sbjct: 80 MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ 111
>gi|147903922 X antigen family member 1E isoform 2 [Homo sapiens]
Length = 146
Score = 65.1 bits (157), Expect = 1e-11
Identities = 32/32 (100%), Positives = 32/32 (100%)
Query: 1 MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ 32
MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ
Sbjct: 66 MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ 97
>gi|148229505 X antigen family member 1E isoform 1 [Homo sapiens]
Length = 160
Score = 65.1 bits (157), Expect = 1e-11
Identities = 32/32 (100%), Positives = 32/32 (100%)
Query: 1 MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ 32
MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ
Sbjct: 80 MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQ 111
>gi|19747271 XAGE-3 protein [Homo sapiens]
Length = 111
Score = 31.2 bits (69), Expect = 0.18
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 37 EMRDMEGDLQELHQSNTGDKSGFGFRRQGE 66
++ D+E DLQEL QS TG + G G QG+
Sbjct: 62 QVPDLEADLQELSQSKTGGECGNGPDDQGK 91
>gi|19747269 XAGE-3 protein [Homo sapiens]
Length = 111
Score = 31.2 bits (69), Expect = 0.18
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 37 EMRDMEGDLQELHQSNTGDKSGFGFRRQGE 66
++ D+E DLQEL QS TG + G G QG+
Sbjct: 62 QVPDLEADLQELSQSKTGGECGNGPDDQGK 91
>gi|19747273 X antigen family, member 5 [Homo sapiens]
Length = 108
Score = 29.3 bits (64), Expect = 0.70
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 37 EMRDMEGDLQELHQSNTGDKSG 58
++ ++E DLQEL QS TGD+ G
Sbjct: 59 QVPNLEADLQELSQSKTGDECG 80
>gi|118601000 X antigen family, member 2-like [Homo sapiens]
Length = 111
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 37 EMRDMEGDLQELHQSNTGD 55
++ D+E DLQEL Q+ TGD
Sbjct: 62 QVPDLEADLQELCQTKTGD 80
>gi|19747283 XAGE-2 protein [Homo sapiens]
Length = 111
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 37 EMRDMEGDLQELHQSNTGD 55
++ D+E DLQEL Q+ TGD
Sbjct: 62 QVPDLEADLQELCQTKTGD 80
>gi|122937474 glutaredoxin, cysteine rich 2 [Homo sapiens]
Length = 248
Score = 26.9 bits (58), Expect = 3.5
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 1 MESPKKKNQQLKVGILHLGSRQKKIRIQLRSQVLGREMRDMEGDLQEL 48
ME P+KK Q G + +K+R ++ S GR ++ + D QEL
Sbjct: 1 MEDPEKKLNQKSDG------KPRKVRFKISSSYSGRVLKQVFEDGQEL 42
>gi|156546910 BRAF35/HDAC2 complex isoform b [Homo sapiens]
Length = 634
Score = 26.6 bits (57), Expect = 4.5
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 5 KKKNQQLKVGILHLGSRQKKIRIQLRSQVLGREMRDMEGDLQELHQS 51
KK+ +L+ I L +QK++ QLR ++ ++ + + +Q L QS
Sbjct: 34 KKQLHELQAKITALSEKQKRVVEQLRKNLIVKQEQPDKFQIQPLPQS 80
>gi|156546894 BRAF35/HDAC2 complex isoform a [Homo sapiens]
Length = 680
Score = 26.6 bits (57), Expect = 4.5
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 5 KKKNQQLKVGILHLGSRQKKIRIQLRSQVLGREMRDMEGDLQELHQS 51
KK+ +L+ I L +QK++ QLR ++ ++ + + +Q L QS
Sbjct: 34 KKQLHELQAKITALSEKQKRVVEQLRKNLIVKQEQPDKFQIQPLPQS 80
>gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens]
Length = 3907
Score = 26.6 bits (57), Expect = 4.5
Identities = 10/26 (38%), Positives = 20/26 (76%)
Query: 22 QKKIRIQLRSQVLGREMRDMEGDLQE 47
Q+ +QL++++L ++M++ E DLQE
Sbjct: 743 QEVQELQLKTELLEKQMKEKENDLQE 768
>gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens]
Length = 3899
Score = 26.6 bits (57), Expect = 4.5
Identities = 10/26 (38%), Positives = 20/26 (76%)
Query: 22 QKKIRIQLRSQVLGREMRDMEGDLQE 47
Q+ +QL++++L ++M++ E DLQE
Sbjct: 743 QEVQELQLKTELLEKQMKEKENDLQE 768
>gi|22035558 transcription initiation factor IIIB isoform 3 [Homo
sapiens]
Length = 473
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 22 QKKIRIQLRSQVLGREMRDMEGDLQ------ELHQSNTGDKSGFGFRRQGEDNT 69
Q+K+R++ QVL +++ ++EG++ E+ N+ K+ G +D +
Sbjct: 94 QRKLRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKAKGGLASLAKDGS 147
>gi|22035556 transcription initiation factor IIIB isoform 1 [Homo
sapiens]
Length = 677
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 22 QKKIRIQLRSQVLGREMRDMEGDLQ------ELHQSNTGDKSGFGFRRQGEDNT 69
Q+K+R++ QVL +++ ++EG++ E+ N+ K+ G +D +
Sbjct: 298 QRKLRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKAKGGLASLAKDGS 351
>gi|18375650 protein tyrosine phosphatase, non-receptor type 13
isoform 4 [Homo sapiens]
Length = 2490
Score = 25.8 bits (55), Expect = 7.7
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 8 NQQLKVGILHLGSRQKKIRIQLRSQVLGREMRDME 42
N ++ +LHL S Q K ++Q+R++ ++ +D+E
Sbjct: 850 NSKICQYLLHLCSYQHKFQLQMRARQSNQDAQDIE 884
>gi|18375646 protein tyrosine phosphatase, non-receptor type 13
isoform 1 [Homo sapiens]
Length = 2485
Score = 25.8 bits (55), Expect = 7.7
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 8 NQQLKVGILHLGSRQKKIRIQLRSQVLGREMRDME 42
N ++ +LHL S Q K ++Q+R++ ++ +D+E
Sbjct: 850 NSKICQYLLHLCSYQHKFQLQMRARQSNQDAQDIE 884
>gi|5453992 protein tyrosine phosphatase, non-receptor type 13
isoform 2 [Homo sapiens]
Length = 2466
Score = 25.8 bits (55), Expect = 7.7
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 8 NQQLKVGILHLGSRQKKIRIQLRSQVLGREMRDME 42
N ++ +LHL S Q K ++Q+R++ ++ +D+E
Sbjct: 850 NSKICQYLLHLCSYQHKFQLQMRARQSNQDAQDIE 884
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.133 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,589,897
Number of Sequences: 37866
Number of extensions: 84766
Number of successful extensions: 198
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 170
Number of HSP's gapped (non-prelim): 31
length of query: 69
length of database: 18,247,518
effective HSP length: 42
effective length of query: 27
effective length of database: 16,657,146
effective search space: 449742942
effective search space used: 449742942
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.