Search of human proteins with 145701028

Search of human proteins with 145701028

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|145701028 hypothetical protein LOC55471 isoform 3 [Homo
sapiens]
         (343 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|145701028 hypothetical protein LOC55471 isoform 3 [Homo sapiens]   692   0.0  
gi|21396487 hypothetical protein LOC55471 isoform 1 [Homo sapiens]    439   e-123
gi|21361732 ring finger protein 121 [Homo sapiens]                     31   1.8  
gi|7661708 feline leukemia virus subgroup C cellular receptor 1 ...    30   4.1  
gi|148839316 NIMA-related kinase 4 [Homo sapiens]                      29   7.0  
gi|110349719 titin isoform N2-A [Homo sapiens]                         28   9.1  
gi|110349717 titin isoform novex-2 [Homo sapiens]                      28   9.1  
gi|110349713 titin isoform novex-1 [Homo sapiens]                      28   9.1  
gi|110349715 titin isoform N2-B [Homo sapiens]                         28   9.1  

>gi|145701028 hypothetical protein LOC55471 isoform 3 [Homo sapiens]
          Length = 343

 Score =  692 bits (1786), Expect = 0.0
 Identities = 343/343 (100%), Positives = 343/343 (100%)

Query: 1   MSVLLRSGLGPLCAVARAAIPFIWRGKYFSSGNEPAENPVTPMLRHLMYKIKSTGPITVA 60
           MSVLLRSGLGPLCAVARAAIPFIWRGKYFSSGNEPAENPVTPMLRHLMYKIKSTGPITVA
Sbjct: 1   MSVLLRSGLGPLCAVARAAIPFIWRGKYFSSGNEPAENPVTPMLRHLMYKIKSTGPITVA 60

Query: 61  EYMKEVLTNPAKLLGIWFISEWMATGKSTAFQLVELGPGRGTLVGDILRVFTQLGSVLKN 120
           EYMKEVLTNPAKLLGIWFISEWMATGKSTAFQLVELGPGRGTLVGDILRVFTQLGSVLKN
Sbjct: 61  EYMKEVLTNPAKLLGIWFISEWMATGKSTAFQLVELGPGRGTLVGDILRVFTQLGSVLKN 120

Query: 121 CDISVHLVEKTPQGWREVFVDIDPQVSDKLRFVLAPSATPAEAFIQHDETRDHVEVCPDA 180
           CDISVHLVEKTPQGWREVFVDIDPQVSDKLRFVLAPSATPAEAFIQHDETRDHVEVCPDA
Sbjct: 121 CDISVHLVEKTPQGWREVFVDIDPQVSDKLRFVLAPSATPAEAFIQHDETRDHVEVCPDA 180

Query: 181 GVIIEELSQRIALTGGAALVADYGHDGTKTDTFRGFCDHKLHDVLIAPGTADLTADVDFS 240
           GVIIEELSQRIALTGGAALVADYGHDGTKTDTFRGFCDHKLHDVLIAPGTADLTADVDFS
Sbjct: 181 GVIIEELSQRIALTGGAALVADYGHDGTKTDTFRGFCDHKLHDVLIAPGTADLTADVDFS 240

Query: 241 YLRRMAQGKVASLGPIKQHTFLKNMGIDVRLKVLLDKSNEPSVRQQLLQGYDMLMNPKKM 300
           YLRRMAQGKVASLGPIKQHTFLKNMGIDVRLKVLLDKSNEPSVRQQLLQGYDMLMNPKKM
Sbjct: 241 YLRRMAQGKVASLGPIKQHTFLKNMGIDVRLKVLLDKSNEPSVRQQLLQGYDMLMNPKKM 300

Query: 301 GERFNFFALLPHQRLQGGRYQRNARQSKPFASVVAGFSELAWQ 343
           GERFNFFALLPHQRLQGGRYQRNARQSKPFASVVAGFSELAWQ
Sbjct: 301 GERFNFFALLPHQRLQGGRYQRNARQSKPFASVVAGFSELAWQ 343


>gi|21396487 hypothetical protein LOC55471 isoform 1 [Homo sapiens]
          Length = 441

 Score =  439 bits (1129), Expect = e-123
 Identities = 216/221 (97%), Positives = 218/221 (98%)

Query: 123 ISVHLVEKTPQGWREVFVDIDPQVSDKLRFVLAPSATPAEAFIQHDETRDHVEVCPDAGV 182
           + VH  +KTPQGWREVFVDIDPQVSDKLRFVLAPSATPAEAFIQHDETRDHVEVCPDAGV
Sbjct: 221 LPVHKFQKTPQGWREVFVDIDPQVSDKLRFVLAPSATPAEAFIQHDETRDHVEVCPDAGV 280

Query: 183 IIEELSQRIALTGGAALVADYGHDGTKTDTFRGFCDHKLHDVLIAPGTADLTADVDFSYL 242
           IIEELSQRIALTGGAALVADYGHDGTKTDTFRGFCDHKLHDVLIAPGTADLTADVDFSYL
Sbjct: 281 IIEELSQRIALTGGAALVADYGHDGTKTDTFRGFCDHKLHDVLIAPGTADLTADVDFSYL 340

Query: 243 RRMAQGKVASLGPIKQHTFLKNMGIDVRLKVLLDKSNEPSVRQQLLQGYDMLMNPKKMGE 302
           RRMAQGKVASLGPIKQHTFLKNMGIDVRLKVLLDKSNEPSVRQQLLQGYDMLMNPKKMGE
Sbjct: 341 RRMAQGKVASLGPIKQHTFLKNMGIDVRLKVLLDKSNEPSVRQQLLQGYDMLMNPKKMGE 400

Query: 303 RFNFFALLPHQRLQGGRYQRNARQSKPFASVVAGFSELAWQ 343
           RFNFFALLPHQRLQGGRYQRNARQSKPFASVVAGFSELAWQ
Sbjct: 401 RFNFFALLPHQRLQGGRYQRNARQSKPFASVVAGFSELAWQ 441



 Score =  247 bits (631), Expect = 1e-65
 Identities = 129/156 (82%), Positives = 129/156 (82%), Gaps = 27/156 (17%)

Query: 1   MSVLLRSGLGPLCAVARAAIPFIWRGKYFSSGNEPAENPVTPMLRHLMYKIKSTGPITVA 60
           MSVLLRSGLGPLCAVARAAIPFIWRGKYFSSGNEPAENPVTPMLRHLMYKIKSTGPITVA
Sbjct: 1   MSVLLRSGLGPLCAVARAAIPFIWRGKYFSSGNEPAENPVTPMLRHLMYKIKSTGPITVA 60

Query: 61  EYMKEVLTNPAK---------------------------LLGIWFISEWMATGKSTAFQL 93
           EYMKEVLTNPAK                           LLGIWFISEWMATGKSTAFQL
Sbjct: 61  EYMKEVLTNPAKGYYVYRDMLGEKGDFITSPEISQIFGELLGIWFISEWMATGKSTAFQL 120

Query: 94  VELGPGRGTLVGDILRVFTQLGSVLKNCDISVHLVE 129
           VELGPGRGTLVGDILRVFTQLGSVLKNCDISVHLVE
Sbjct: 121 VELGPGRGTLVGDILRVFTQLGSVLKNCDISVHLVE 156


>gi|21361732 ring finger protein 121 [Homo sapiens]
          Length = 327

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 11/67 (16%)

Query: 171 RDHVEVCPD-----------AGVIIEELSQRIALTGGAALVADYGHDGTKTDTFRGFCDH 219
           RD  E+C D           +G+  + LS  +    G  +  D   +G   +T+R  C+H
Sbjct: 194 RDFAEMCADYMASTIGFYSESGMPTKHLSDSVCAVCGQQIFVDVSEEGIIENTYRLSCNH 253

Query: 220 KLHDVLI 226
             H+  I
Sbjct: 254 VFHEFCI 260


>gi|7661708 feline leukemia virus subgroup C cellular receptor 1
           [Homo sapiens]
          Length = 555

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 18/59 (30%), Positives = 32/59 (54%)

Query: 66  VLTNPAKLLGIWFISEWMATGKSTAFQLVELGPGRGTLVGDILRVFTQLGSVLKNCDIS 124
           +L  P+++  +WF  + ++T  +TA    +LG   G L+  +L   TQ  + L  C+IS
Sbjct: 217 ILGLPSRIASVWFGPKEVSTACATAVLGNQLGTAVGFLLPPVLVPNTQNDTNLLACNIS 275


>gi|148839316 NIMA-related kinase 4 [Homo sapiens]
          Length = 841

 Score = 28.9 bits (63), Expect = 7.0
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 10/71 (14%)

Query: 271 LKVLLDKSNE--PSVRQQLLQGYDMLMNPKKMGERFNFFALLPHQRLQGGRYQRNARQSK 328
           ++ +L K  E  PSVR  L Q Y        +  + +FF      +      +    QSK
Sbjct: 238 IRTMLSKRPEERPSVRSILRQPY--------IKRQISFFLEATKIKTSKNNIKNGDSQSK 289

Query: 329 PFASVVAGFSE 339
           PFA+VV+G +E
Sbjct: 290 PFATVVSGEAE 300


>gi|110349719 titin isoform N2-A [Homo sapiens]
          Length = 33423

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 7/54 (12%)

Query: 27    KYFSSGNE-PAE-NPVTPMLR---HLMYKIKSTGPITVAEYMKEV--LTNPAKL 73
             K+F   +E PAE N  T +LR   HL  KIK+  P  +AEY  E+     PAKL
Sbjct: 11337 KWFKGYDEIPAEPNDKTEILRDGNHLYLKIKNAMPEDIAEYAVEIEGKRYPAKL 11390


>gi|110349717 titin isoform novex-2 [Homo sapiens]
          Length = 27118

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 7/54 (12%)

Query: 27   KYFSSGNE-PAE-NPVTPMLR---HLMYKIKSTGPITVAEYMKEV--LTNPAKL 73
            K+F   +E PAE N  T +LR   HL  KIK+  P  +AEY  E+     PAKL
Sbjct: 5032 KWFKGYDEIPAEPNDKTEILRDGNHLYLKIKNAMPEDIAEYAVEIEGKRYPAKL 5085


>gi|110349713 titin isoform novex-1 [Homo sapiens]
          Length = 27051

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 7/54 (12%)

Query: 27   KYFSSGNE-PAE-NPVTPMLR---HLMYKIKSTGPITVAEYMKEV--LTNPAKL 73
            K+F   +E PAE N  T +LR   HL  KIK+  P  +AEY  E+     PAKL
Sbjct: 4965 KWFKGYDEIPAEPNDKTEILRDGNHLYLKIKNAMPEDIAEYAVEIEGKRYPAKL 5018


>gi|110349715 titin isoform N2-B [Homo sapiens]
          Length = 26926

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 7/54 (12%)

Query: 27   KYFSSGNE-PAE-NPVTPMLR---HLMYKIKSTGPITVAEYMKEV--LTNPAKL 73
            K+F   +E PAE N  T +LR   HL  KIK+  P  +AEY  E+     PAKL
Sbjct: 4840 KWFKGYDEIPAEPNDKTEILRDGNHLYLKIKNAMPEDIAEYAVEIEGKRYPAKL 4893


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.138    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,029,762
Number of Sequences: 37866
Number of extensions: 554888
Number of successful extensions: 995
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 989
Number of HSP's gapped (non-prelim): 10
length of query: 343
length of database: 18,247,518
effective HSP length: 103
effective length of query: 240
effective length of database: 14,347,320
effective search space: 3443356800
effective search space used: 3443356800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.