Search of human proteins with 98986331

Search of human proteins with 98986331

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|98986331 pentatricopeptide repeat domain 2 [Homo sapiens]
         (388 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|98986331 pentatricopeptide repeat domain 2 [Homo sapiens]          759   0.0  
gi|186928850 mitochondrial ribosomal protein S27 [Homo sapiens]        57   2e-08
gi|31621305 leucine-rich PPR motif-containing protein [Homo sapi...    34   0.26 
gi|40316926 clusterin-like 1 (retinal) [Homo sapiens]                  31   2.2  
gi|7657490 clusterin-like 1 (retinal) [Homo sapiens]                   31   2.2  
gi|157743290 leucine rich repeat containing 30 [Homo sapiens]          30   2.8  
gi|38492358 pentatricopeptide repeat domain 1 [Homo sapiens]           30   4.8  
gi|46049092 nebulin-related anchoring protein isoform C [Homo sa...    29   8.3  
gi|46049105 nebulin-related anchoring protein isoform S [Homo sa...    29   8.3  

>gi|98986331 pentatricopeptide repeat domain 2 [Homo sapiens]
          Length = 388

 Score =  759 bits (1959), Expect = 0.0
 Identities = 388/388 (100%), Positives = 388/388 (100%)

Query: 1   MVRDSMAAAFRPSNRVLLQALQILVYPGVGGSGSVSCRCPLGAKRYLLTDNVVKLKEFQQ 60
           MVRDSMAAAFRPSNRVLLQALQILVYPGVGGSGSVSCRCPLGAKRYLLTDNVVKLKEFQQ
Sbjct: 1   MVRDSMAAAFRPSNRVLLQALQILVYPGVGGSGSVSCRCPLGAKRYLLTDNVVKLKEFQQ 60

Query: 61  KKVAVACNLSGTKETYFRNLKKKLTQNKLILKGELITLLHLCESRDHVELAKNVIYRYHA 120
           KKVAVACNLSGTKETYFRNLKKKLTQNKLILKGELITLLHLCESRDHVELAKNVIYRYHA
Sbjct: 61  KKVAVACNLSGTKETYFRNLKKKLTQNKLILKGELITLLHLCESRDHVELAKNVIYRYHA 120

Query: 121 ENKNFTLGEYKFGPLFVRLCYELDLEESAVELMKDQHLRGFFSDSTSFNILMDMLFIKGK 180
           ENKNFTLGEYKFGPLFVRLCYELDLEESAVELMKDQHLRGFFSDSTSFNILMDMLFIKGK
Sbjct: 121 ENKNFTLGEYKFGPLFVRLCYELDLEESAVELMKDQHLRGFFSDSTSFNILMDMLFIKGK 180

Query: 181 YKSALQVLIEMKNQDVKFTKDTYVLAFAICYKLNSPESFKICTTLREEALLKGEILSRRA 240
           YKSALQVLIEMKNQDVKFTKDTYVLAFAICYKLNSPESFKICTTLREEALLKGEILSRRA
Sbjct: 181 YKSALQVLIEMKNQDVKFTKDTYVLAFAICYKLNSPESFKICTTLREEALLKGEILSRRA 240

Query: 241 SCFAVALALNQNEMAKAVSIFSQIMNPESIACINLNIIIHIQSNMLENLIKTLKNAAEGN 300
           SCFAVALALNQNEMAKAVSIFSQIMNPESIACINLNIIIHIQSNMLENLIKTLKNAAEGN
Sbjct: 241 SCFAVALALNQNEMAKAVSIFSQIMNPESIACINLNIIIHIQSNMLENLIKTLKNAAEGN 300

Query: 301 LSKFVKRHVFSEEVLAKVREKVKDVPALVAKFDEIYGTLHITGQVTTDSLDAVLCHTPRD 360
           LSKFVKRHVFSEEVLAKVREKVKDVPALVAKFDEIYGTLHITGQVTTDSLDAVLCHTPRD
Sbjct: 301 LSKFVKRHVFSEEVLAKVREKVKDVPALVAKFDEIYGTLHITGQVTTDSLDAVLCHTPRD 360

Query: 361 RKSHTLLLNKRMVSRRTFQPLSQSLLAE 388
           RKSHTLLLNKRMVSRRTFQPLSQSLLAE
Sbjct: 361 RKSHTLLLNKRMVSRRTFQPLSQSLLAE 388


>gi|186928850 mitochondrial ribosomal protein S27 [Homo sapiens]
          Length = 414

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 42/173 (24%), Positives = 85/173 (49%), Gaps = 16/173 (9%)

Query: 44  KRYLLTDNVVKLKEFQQKKVAVACNLSGTKETYFRNLKKKLTQNKLILKGELITLLHLCE 103
           KRYLL+   V   +++ ++    C L+       +  ++KL  + L +      L+    
Sbjct: 26  KRYLLSSAYVDSHKWEAREKEHYC-LADLASLMDKTFERKLPVSSLTIS----RLIDNIS 80

Query: 104 SRDHVELAKNVIYRY-HAEN----KNFTLGEYKFGPLFVRLCYELDLEESAVELMKDQHL 158
           SR+ ++ A+  +Y++ H+ N    +N+T+  +      +R C + D ++ A+  + ++  
Sbjct: 81  SREEIDHAEYYLYKFRHSPNCWYLRNWTIHTW------IRQCLKYDAQDKALYTLVNKVQ 134

Query: 159 RGFFSDSTSFNILMDMLFIKGKYKSALQVLIEMKNQDVKFTKDTYVLAFAICY 211
            G F D+ +FN+LMD    K  YK AL V+ E+  Q+      T +L+  + +
Sbjct: 135 YGIFPDNFTFNLLMDSFIKKENYKDALSVVFEVMMQEAFEVPSTQLLSLYVLF 187


>gi|31621305 leucine-rich PPR motif-containing protein [Homo
           sapiens]
          Length = 1394

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 17/153 (11%)

Query: 57  EFQQKKVAVACNLSGTKETYFRNLKKKLTQNKLILKGELITLLHLCESRDHVELAKNVIY 116
           +FQ+     +  L  T ET    LK +    + +LK  ++ L     S ++++ A  +  
Sbjct: 652 DFQKTVQLTSSELESTLET----LKAENQPIRDVLKQLILVLC----SEENMQKALELKA 703

Query: 117 RYHAENKNFTLGEYKFGPLFVRLCYELDLEESAVELMK--DQHLRGFFSDSTSFNILMDM 174
           +Y ++      G Y      + LC   D  E A+ L +  D+       D+  +  L+ +
Sbjct: 704 KYESD---MVTGGYA---ALINLCCRHDKVEDALNLKEEFDRLDSSAVLDTGKYVGLVRV 757

Query: 175 LFIKGKYKSALQVLIEMKNQDVKFTKDTYVLAF 207
           L   GK + A+ +L EMK +DV   KDT  L+F
Sbjct: 758 LAKHGKLQDAINILKEMKEKDV-LIKDTTALSF 789


>gi|40316926 clusterin-like 1 (retinal) [Homo sapiens]
          Length = 466

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 19/62 (30%), Positives = 30/62 (48%)

Query: 283 SNMLENLIKTLKNAAEGNLSKFVKRHVFSEEVLAKVREKVKDVPALVAKFDEIYGTLHIT 342
           S ML    + L    + NLS+  K H   ++  A + E   DVPAL  + DE    ++++
Sbjct: 294 SKMLPGQDRGLCGELDQNLSRCFKFHEKCQKCQAHLSEDCPDVPALHTELDEAIRLVNVS 353

Query: 343 GQ 344
            Q
Sbjct: 354 NQ 355


>gi|7657490 clusterin-like 1 (retinal) [Homo sapiens]
          Length = 466

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 19/62 (30%), Positives = 30/62 (48%)

Query: 283 SNMLENLIKTLKNAAEGNLSKFVKRHVFSEEVLAKVREKVKDVPALVAKFDEIYGTLHIT 342
           S ML    + L    + NLS+  K H   ++  A + E   DVPAL  + DE    ++++
Sbjct: 294 SKMLPGQDRGLCGELDQNLSRCFKFHEKCQKCQAHLSEDCPDVPALHTELDEAIRLVNVS 353

Query: 343 GQ 344
            Q
Sbjct: 354 NQ 355


>gi|157743290 leucine rich repeat containing 30 [Homo sapiens]
          Length = 301

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 5/82 (6%)

Query: 216 PESFKICTTLREEALLKGEILSRRASCFAVALALNQNEMAKAVSIFSQIMNPESIACINL 275
           P    +C  L E   L    LS+  +CFA    L +  ++   + F+ I  P  +  +  
Sbjct: 133 PAELSLCRKL-EVLSLSHNCLSQLPACFADLSRLRKLNLSN--NFFAHI--PMCVFSLKE 187

Query: 276 NIIIHIQSNMLENLIKTLKNAA 297
            I +H+ SN LEN+ +++++ A
Sbjct: 188 LIFLHVGSNRLENIAESIQHLA 209


>gi|38492358 pentatricopeptide repeat domain 1 [Homo sapiens]
          Length = 700

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 28/130 (21%), Positives = 61/130 (46%), Gaps = 6/130 (4%)

Query: 138 RLCYELDLEESAVELMKDQHLRGFFSDSTSFNILMDMLFIKGKYKSALQVLIEMKNQDVK 197
           +L   LDL E   +++K++ L+   S+ T   +L+      G  K A  +  +MK +D++
Sbjct: 151 KLVEALDLFER--QMLKEERLQPMESNYT---VLIGGCGRVGYLKKAFNLYNQMKKRDLE 205

Query: 198 FTKDTYVLAFAICYKLNSPES-FKICTTLREEALLKGEILSRRASCFAVALALNQNEMAK 256
            +  TY   F +C +    +S  +    LR++   K   L+ +     + +A    ++  
Sbjct: 206 PSDATYTALFNVCAESPWKDSALQSALKLRQQLQAKNFELNLKTYHALLKMAAKCADLRM 265

Query: 257 AVSIFSQIMN 266
            + +F +I++
Sbjct: 266 CLDVFKEIIH 275


>gi|46049092 nebulin-related anchoring protein isoform C [Homo
           sapiens]
          Length = 1695

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 9/114 (7%)

Query: 72  TKETYFRNLKKKLTQNKLILKGELITL--LHLCESRDHVELAKNVIYRYHAENKNFTLGE 129
           T    F  +K K    K   KG  + L  + L  ++   ELA N+ Y+   E    T G+
Sbjct: 502 TNAKLFSEVKYKEGWEKTKGKGFEMKLDAMSLLAAKASGELASNIKYKEEYEK---TKGK 558

Query: 130 YKFGPLFVRLCYELDLEESAVELMKDQHLRGFFSDSTSFNILMDMLFIKGKYKS 183
              G    RL + L + + + E+   ++ +GF    T F++ MDM+ I+   K+
Sbjct: 559 -AMGTADSRLLHSLQIAKMSSEV---EYKKGFEESKTRFHLPMDMVNIRHAKKA 608


>gi|46049105 nebulin-related anchoring protein isoform S [Homo
           sapiens]
          Length = 1730

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 9/114 (7%)

Query: 72  TKETYFRNLKKKLTQNKLILKGELITL--LHLCESRDHVELAKNVIYRYHAENKNFTLGE 129
           T    F  +K K    K   KG  + L  + L  ++   ELA N+ Y+   E    T G+
Sbjct: 537 TNAKLFSEVKYKEGWEKTKGKGFEMKLDAMSLLAAKASGELASNIKYKEEYEK---TKGK 593

Query: 130 YKFGPLFVRLCYELDLEESAVELMKDQHLRGFFSDSTSFNILMDMLFIKGKYKS 183
              G    RL + L + + + E+   ++ +GF    T F++ MDM+ I+   K+
Sbjct: 594 -AMGTADSRLLHSLQIAKMSSEV---EYKKGFEESKTRFHLPMDMVNIRHAKKA 643


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.135    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,555,319
Number of Sequences: 37866
Number of extensions: 503663
Number of successful extensions: 1445
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1441
Number of HSP's gapped (non-prelim): 9
length of query: 388
length of database: 18,247,518
effective HSP length: 104
effective length of query: 284
effective length of database: 14,309,454
effective search space: 4063884936
effective search space used: 4063884936
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.