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Search of human proteins with 98985801
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|98985801 CD3 antigen, delta subunit isoform B precursor
[Homo sapiens]
(127 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|98985801 CD3 antigen, delta subunit isoform B precursor [Homo... 261 1e-70
gi|4502669 CD3 antigen, delta subunit isoform A precursor [Homo ... 238 1e-63
gi|4557429 CD3G antigen, gamma polypeptide precursor [Homo sapiens] 65 1e-11
gi|4758072 cryptochrome 1 (photolyase-like) [Homo sapiens] 28 1.5
gi|38372919 basigin isoform 1 precursor [Homo sapiens] 27 4.2
gi|38372923 basigin isoform 4 [Homo sapiens] 27 4.2
gi|38372925 basigin isoform 2 precursor [Homo sapiens] 27 4.2
gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens] 26 7.2
gi|42789729 lymphoid-restricted membrane protein [Homo sapiens] 26 7.2
gi|126090892 aggrecan isoform 2 precursor [Homo sapiens] 26 9.4
gi|126090883 aggrecan isoform 1 precursor [Homo sapiens] 26 9.4
gi|108773804 Fraser syndrome 1 [Homo sapiens] 26 9.4
gi|110815815 centlein isoform 1 [Homo sapiens] 26 9.4
gi|167555106 centlein isoform 2 [Homo sapiens] 26 9.4
gi|38524600 zinc finger protein 667 [Homo sapiens] 26 9.4
>gi|98985801 CD3 antigen, delta subunit isoform B precursor [Homo
sapiens]
Length = 127
Score = 261 bits (666), Expect = 1e-70
Identities = 127/127 (100%), Positives = 127/127 (100%)
Query: 1 MEHSTFLSGLVLATLLSQVSPFKIPIEELEDRVFVNCNTSITWVEGTVGTLLSDITRLDL 60
MEHSTFLSGLVLATLLSQVSPFKIPIEELEDRVFVNCNTSITWVEGTVGTLLSDITRLDL
Sbjct: 1 MEHSTFLSGLVLATLLSQVSPFKIPIEELEDRVFVNCNTSITWVEGTVGTLLSDITRLDL 60
Query: 61 GKRILDPRGIYRCNGTDIYKDKESTVQVHYRTADTQALLRNDQVYQPLRDRDDAQYSHLG 120
GKRILDPRGIYRCNGTDIYKDKESTVQVHYRTADTQALLRNDQVYQPLRDRDDAQYSHLG
Sbjct: 61 GKRILDPRGIYRCNGTDIYKDKESTVQVHYRTADTQALLRNDQVYQPLRDRDDAQYSHLG 120
Query: 121 GNWARNK 127
GNWARNK
Sbjct: 121 GNWARNK 127
>gi|4502669 CD3 antigen, delta subunit isoform A precursor [Homo
sapiens]
Length = 171
Score = 238 bits (606), Expect = 1e-63
Identities = 126/171 (73%), Positives = 126/171 (73%), Gaps = 44/171 (25%)
Query: 1 MEHSTFLSGLVLATLLSQVSPFKIPIEELEDRVFVNCNTSITWVEGTVGTLLSDITRLDL 60
MEHSTFLSGLVLATLLSQVSPFKIPIEELEDRVFVNCNTSITWVEGTVGTLLSDITRLDL
Sbjct: 1 MEHSTFLSGLVLATLLSQVSPFKIPIEELEDRVFVNCNTSITWVEGTVGTLLSDITRLDL 60
Query: 61 GKRILDPRGIYRCNGTDIYKDKESTVQVHYR----------------------------- 91
GKRILDPRGIYRCNGTDIYKDKESTVQVHYR
Sbjct: 61 GKRILDPRGIYRCNGTDIYKDKESTVQVHYRMCQSCVELDPATVAGIIVTDVIATLLLAL 120
Query: 92 ---------------TADTQALLRNDQVYQPLRDRDDAQYSHLGGNWARNK 127
ADTQALLRNDQVYQPLRDRDDAQYSHLGGNWARNK
Sbjct: 121 GVFCFAGHETGRLSGAADTQALLRNDQVYQPLRDRDDAQYSHLGGNWARNK 171
>gi|4557429 CD3G antigen, gamma polypeptide precursor [Homo sapiens]
Length = 182
Score = 65.5 bits (158), Expect = 1e-11
Identities = 53/183 (28%), Positives = 78/183 (42%), Gaps = 61/183 (33%)
Query: 1 MEHSTFLSGLVLATLLSQVSP---------FKIPIEELEDRVFVNCNT---SITWVEG-- 46
ME L+ L+LA +L Q + K+ + + V + C+ +ITW +
Sbjct: 1 MEQGKGLAVLILAIILLQGTLAQSIKGNHLVKVYDYQEDGSVLLTCDAEAKNITWFKDGK 60
Query: 47 TVGTLLSDITRLDLGKRILDPRGIYRCNGTDIYKDKESTVQVHYR--------------- 91
+G L D + +LG DPRG+Y+C G+ ++K +QV+YR
Sbjct: 61 MIGFLTEDKKKWNLGSNAKDPRGMYQCKGS---QNKSKPLQVYYRMCQNCIELNAATISG 117
Query: 92 -----------------------------TADTQALLRNDQVYQPLRDRDDAQYSHLGGN 122
+D Q LL NDQ+YQPL+DR+D QYSHL GN
Sbjct: 118 FLFAEIVSIFVLAVGVYFIAGQDGVRQSRASDKQTLLPNDQLYQPLKDREDDQYSHLQGN 177
Query: 123 WAR 125
R
Sbjct: 178 QLR 180
>gi|4758072 cryptochrome 1 (photolyase-like) [Homo sapiens]
Length = 586
Score = 28.5 bits (62), Expect = 1.5
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 14 TLLSQVSPFKIPIEELEDRVFVNCNTSIT 42
TL+S++ P +IP+E + V C T ++
Sbjct: 155 TLISKMEPLEIPVETITSEVIEKCTTPLS 183
>gi|38372919 basigin isoform 1 precursor [Homo sapiens]
Length = 385
Score = 26.9 bits (58), Expect = 4.2
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 26 IEELEDRVFVNCNTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCNGTDIYKDKEST 85
I + ED+ +N + S +V + G I L++ DP G YRCNGT ++
Sbjct: 258 ITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEA---DP-GQYRCNGTSSKGSDQAI 313
Query: 86 VQVHYRT 92
+ + R+
Sbjct: 314 ITLRVRS 320
>gi|38372923 basigin isoform 4 [Homo sapiens]
Length = 205
Score = 26.9 bits (58), Expect = 4.2
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 26 IEELEDRVFVNCNTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCNGTDIYKDKEST 85
I + ED+ +N + S +V + G I L++ DP G YRCNGT ++
Sbjct: 78 ITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEA---DP-GQYRCNGTSSKGSDQAI 133
Query: 86 VQVHYRT 92
+ + R+
Sbjct: 134 ITLRVRS 140
>gi|38372925 basigin isoform 2 precursor [Homo sapiens]
Length = 269
Score = 26.9 bits (58), Expect = 4.2
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 26 IEELEDRVFVNCNTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCNGTDIYKDKEST 85
I + ED+ +N + S +V + G I L++ DP G YRCNGT ++
Sbjct: 142 ITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEA---DP-GQYRCNGTSSKGSDQAI 197
Query: 86 VQVHYRT 92
+ + R+
Sbjct: 198 ITLRVRS 204
>gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens]
Length = 4391
Score = 26.2 bits (56), Expect = 7.2
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 16/79 (20%)
Query: 27 EELEDRVFVNCNTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCNGTDIYKDKESTV 86
+ELED V ++ N SI + VGT S+ G YRC ++ Y +S V
Sbjct: 3061 QELEDNVHISPNGSIITI---VGTRPSN-------------HGTYRCVASNAYGVAQSVV 3104
Query: 87 QVHYRTADTQALLRNDQVY 105
+ T ++L V+
Sbjct: 3105 NLSVHGPPTVSVLPEGPVW 3123
>gi|42789729 lymphoid-restricted membrane protein [Homo sapiens]
Length = 499
Score = 26.2 bits (56), Expect = 7.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 96 QALLRNDQVYQPLRDRDDAQ 115
Q LL+N++ + PL D DD Q
Sbjct: 281 QVLLQNERSFNPLEDDDDCQ 300
>gi|126090892 aggrecan isoform 2 precursor [Homo sapiens]
Length = 2416
Score = 25.8 bits (55), Expect = 9.4
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 7/42 (16%)
Query: 69 GIYRCNGTDIYKDKESTVQV-------HYRTADTQALLRNDQ 103
G+YRC +D E+T++V HYR T+ L D+
Sbjct: 129 GVYRCEVMHGIEDSEATLEVVVKGIVFHYRAISTRYTLDFDR 170
>gi|126090883 aggrecan isoform 1 precursor [Homo sapiens]
Length = 2317
Score = 25.8 bits (55), Expect = 9.4
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 7/42 (16%)
Query: 69 GIYRCNGTDIYKDKESTVQV-------HYRTADTQALLRNDQ 103
G+YRC +D E+T++V HYR T+ L D+
Sbjct: 129 GVYRCEVMHGIEDSEATLEVVVKGIVFHYRAISTRYTLDFDR 170
>gi|108773804 Fraser syndrome 1 [Homo sapiens]
Length = 4011
Score = 25.8 bits (55), Expect = 9.4
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 15 LLSQVSPFKIPIEELEDRVFVNCNTSITWVEGTVGTLLSDITR 57
LL + + K+ I + ED + + I WV + G L + I R
Sbjct: 2655 LLGEFTQAKVIINDTEDEPTLEFDKKIYWVNESAGFLFAPIER 2697
>gi|110815815 centlein isoform 1 [Homo sapiens]
Length = 1406
Score = 25.8 bits (55), Expect = 9.4
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 62 KRILDPRGIYRCNGTDIYKDKESTVQVHYRTADTQALLRNDQ 103
K + + + +Y+ N T + E Q+ DTQ +LRN +
Sbjct: 329 KELQELQNLYKQNSTHTAQQAELIQQLQVLNMDTQKVLRNQE 370
>gi|167555106 centlein isoform 2 [Homo sapiens]
Length = 391
Score = 25.8 bits (55), Expect = 9.4
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 62 KRILDPRGIYRCNGTDIYKDKESTVQVHYRTADTQALLRNDQ 103
K + + + +Y+ N T + E Q+ DTQ +LRN +
Sbjct: 329 KELQELQNLYKQNSTHTAQQAELIQQLQVLNMDTQKVLRNQE 370
>gi|38524600 zinc finger protein 667 [Homo sapiens]
Length = 610
Score = 25.8 bits (55), Expect = 9.4
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 49 GTLLSDITRLDLGKRILDPRGIYRCNGTDIYKDKESTVQVHYRTADTQALLR 100
G L + I+ L L +RI Y+C+ D + + ST+ +H R + + L R
Sbjct: 336 GKLFNRISPLMLHQRIHTSEKPYKCDKCDKFFRRLSTLILHLRIHNGEKLYR 387
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,601,252
Number of Sequences: 37866
Number of extensions: 179074
Number of successful extensions: 432
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 418
Number of HSP's gapped (non-prelim): 20
length of query: 127
length of database: 18,247,518
effective HSP length: 90
effective length of query: 37
effective length of database: 14,839,578
effective search space: 549064386
effective search space used: 549064386
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.