Search of human proteins with 93102358

Search of human proteins with 93102358

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|93102358 cell death-inducing DFFA-like effector b [Homo
sapiens]
         (219 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|93102358 cell death-inducing DFFA-like effector b [Homo sapiens]   442   e-124
gi|23943904 cell death-inducing DFFA-like effector c [Homo sapiens]   158   4e-39
gi|4557465 cell death-inducing DFFA-like effector a isoform 1 [H...   152   3e-37
gi|38158011 cell death-inducing DFFA-like effector a isoform 2 [...   151   4e-37
gi|47132600 DNA fragmentation factor, 45kDa, alpha polypeptide i...    46   3e-05
gi|4758148 DNA fragmentation factor, 45kDa, alpha polypeptide is...    46   3e-05
gi|4758150 DNA fragmentation factor, 40 kD, beta polypeptide [Ho...    32   0.42 

>gi|93102358 cell death-inducing DFFA-like effector b [Homo sapiens]
          Length = 219

 Score =  442 bits (1136), Expect = e-124
 Identities = 219/219 (100%), Positives = 219/219 (100%)

Query: 1   MEYLSALNPSDLLRSVSNISSEFGRRVWTSAPPPQRPFRVCDHKRTIRKGLTAATRQELL 60
           MEYLSALNPSDLLRSVSNISSEFGRRVWTSAPPPQRPFRVCDHKRTIRKGLTAATRQELL
Sbjct: 1   MEYLSALNPSDLLRSVSNISSEFGRRVWTSAPPPQRPFRVCDHKRTIRKGLTAATRQELL 60

Query: 61  AKALETLLLNGVLTLVLEEDGTAVDSEDFFQLLEDDTCLMVLQSGQSWSPTRSGVLSYGL 120
           AKALETLLLNGVLTLVLEEDGTAVDSEDFFQLLEDDTCLMVLQSGQSWSPTRSGVLSYGL
Sbjct: 61  AKALETLLLNGVLTLVLEEDGTAVDSEDFFQLLEDDTCLMVLQSGQSWSPTRSGVLSYGL 120

Query: 121 GRERPKHSKDIARFTFDVYKQNPRDLFGSLNVKATFYGLYSMSCDFQGLGPKKVLRELLR 180
           GRERPKHSKDIARFTFDVYKQNPRDLFGSLNVKATFYGLYSMSCDFQGLGPKKVLRELLR
Sbjct: 121 GRERPKHSKDIARFTFDVYKQNPRDLFGSLNVKATFYGLYSMSCDFQGLGPKKVLRELLR 180

Query: 181 WTSTLLQGLGHMLLGISSTLRHAVEGAEQWQQKGRLHSY 219
           WTSTLLQGLGHMLLGISSTLRHAVEGAEQWQQKGRLHSY
Sbjct: 181 WTSTLLQGLGHMLLGISSTLRHAVEGAEQWQQKGRLHSY 219


>gi|23943904 cell death-inducing DFFA-like effector c [Homo sapiens]
          Length = 238

 Score =  158 bits (399), Expect = 4e-39
 Identities = 95/225 (42%), Positives = 131/225 (58%), Gaps = 8/225 (3%)

Query: 1   MEYLSALNPSDLLRSVSNISSEFGRRVWTSAPPPQ----RPFRVCDHKRTIRKGLTAATR 56
           M+ LS L P  L R VS  +S   +++  S P P+    RP RV    R++RKG+ A + 
Sbjct: 5   MKSLSLLYPKSLSRHVSVRTSVVTQQL-LSEPSPKAPRARPCRVSTADRSVRKGIMAYSL 63

Query: 57  QELLAKALETLLL-NGVLTLVLEEDGTAVDSEDFFQLLEDDTCLMVLQSGQSWSPTRSGV 115
           ++LL K  +TL+L +    LVLEEDGT V++E++FQ L  DT  MVLQ GQ W P     
Sbjct: 64  EDLLLKVRDTLMLADKPFFLVLEEDGTTVETEEYFQALAGDTVFMVLQKGQKWQPPSEQG 123

Query: 116 LSYGLG-RERPKHSKDIARFTFDVYKQNPRDLFGSLNVKATFYGLYSMSCDFQGLGPKKV 174
             + L    +P    D+AR TFD+YK NP+D  G LNVKATFY  YS+S D    G K++
Sbjct: 124 TRHPLSLSHKPAKKIDVARVTFDLYKLNPQDFIGCLNVKATFYDTYSLSYDLHCCGAKRI 183

Query: 175 LRELLRWTSTLLQGLGHMLLGISSTLRHAVEGAEQWQ-QKGRLHS 218
           ++E  RW    +Q  GH+LLG S  L+  ++  E+ Q  KG+  S
Sbjct: 184 MKEAFRWALFSMQATGHVLLGTSCYLQQLLDATEEGQPPKGKASS 228


>gi|4557465 cell death-inducing DFFA-like effector a isoform 1 [Homo
           sapiens]
          Length = 219

 Score =  152 bits (383), Expect = 3e-37
 Identities = 87/210 (41%), Positives = 128/210 (60%), Gaps = 11/210 (5%)

Query: 12  LLRSVSNISSEFGRRVWTSAPPPQRPFRVCDHKRTIRKGLTAATRQELLAKALETLLL-N 70
           L+R ++ + S+  R ++T    P RPFRV +H R+ R+G+ A++ QEL++K L+ L++  
Sbjct: 11  LIRPLTFMGSQTKRVLFTPLMHPARPFRVSNHDRSSRRGVMASSLQELISKTLDALVIAT 70

Query: 71  GVLTLVLEEDGTAVDSEDFFQLLEDDTCLMVLQSGQSWSPTRSGVLSYGLGRERPKHSKD 130
           G++TLVLEEDGT VD+E+FFQ L D+T  M+L+ GQ W P    V +       P     
Sbjct: 71  GLVTLVLEEDGTVVDTEEFFQTLGDNTHFMILEKGQKWMPGSQHVPTCS-----PPKRSG 125

Query: 131 IARFTFDVYKQNPRDLFGSLNVKATFYGLYSMSCDFQGLGPKKVLRELLRWTSTLLQGLG 190
           IAR TFD+Y+ NP+D  G LNVKAT Y +YS+S D +  G K +LR LLR+ S   Q  G
Sbjct: 126 IARVTFDLYRLNPKDFIGCLNVKATMYEMYSVSYDIRCTGLKGLLRSLLRFLSYSAQVTG 185

Query: 191 HMLLGISSTLRHAVEGAEQ-----WQQKGR 215
             L+ + + +   ++  E+      Q KGR
Sbjct: 186 QFLIYLGTYMLRVLDDKEERPSLRSQAKGR 215


>gi|38158011 cell death-inducing DFFA-like effector a isoform 2
           [Homo sapiens]
          Length = 253

 Score =  151 bits (382), Expect = 4e-37
 Identities = 87/213 (40%), Positives = 129/213 (60%), Gaps = 11/213 (5%)

Query: 9   PSDLLRSVSNISSEFGRRVWTSAPPPQRPFRVCDHKRTIRKGLTAATRQELLAKALETLL 68
           P++  R ++ + S+  R ++T    P RPFRV +H R+ R+G+ A++ QEL++K L+ L+
Sbjct: 42  PAEPSRPLTFMGSQTKRVLFTPLMHPARPFRVSNHDRSSRRGVMASSLQELISKTLDALV 101

Query: 69  L-NGVLTLVLEEDGTAVDSEDFFQLLEDDTCLMVLQSGQSWSPTRSGVLSYGLGRERPKH 127
           +  G++TLVLEEDGT VD+E+FFQ L D+T  M+L+ GQ W P    V +       P  
Sbjct: 102 IATGLVTLVLEEDGTVVDTEEFFQTLGDNTHFMILEKGQKWMPGSQHVPTCS-----PPK 156

Query: 128 SKDIARFTFDVYKQNPRDLFGSLNVKATFYGLYSMSCDFQGLGPKKVLRELLRWTSTLLQ 187
              IAR TFD+Y+ NP+D  G LNVKAT Y +YS+S D +  G K +LR LLR+ S   Q
Sbjct: 157 RSGIARVTFDLYRLNPKDFIGCLNVKATMYEMYSVSYDIRCTGLKGLLRSLLRFLSYSAQ 216

Query: 188 GLGHMLLGISSTLRHAVEGAEQ-----WQQKGR 215
             G  L+ + + +   ++  E+      Q KGR
Sbjct: 217 VTGQFLIYLGTYMLRVLDDKEERPSLRSQAKGR 249


>gi|47132600 DNA fragmentation factor, 45kDa, alpha polypeptide
           isoform 2 [Homo sapiens]
          Length = 268

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 3/67 (4%)

Query: 50  GLTAATRQELLAKALETLLLNGVLT---LVLEEDGTAVDSEDFFQLLEDDTCLMVLQSGQ 106
           G+ A+  ++L +KA + L ++  LT   LVL EDGT VD +D+F  L  +T  + L S +
Sbjct: 33  GVAASCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDDDYFLCLPSNTKFVALASNE 92

Query: 107 SWSPTRS 113
            W+   S
Sbjct: 93  KWAYNNS 99


>gi|4758148 DNA fragmentation factor, 45kDa, alpha polypeptide
           isoform 1 [Homo sapiens]
          Length = 331

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 3/67 (4%)

Query: 50  GLTAATRQELLAKALETLLLNGVLT---LVLEEDGTAVDSEDFFQLLEDDTCLMVLQSGQ 106
           G+ A+  ++L +KA + L ++  LT   LVL EDGT VD +D+F  L  +T  + L S +
Sbjct: 33  GVAASCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDDDYFLCLPSNTKFVALASNE 92

Query: 107 SWSPTRS 113
            W+   S
Sbjct: 93  KWAYNNS 99


>gi|4758150 DNA fragmentation factor, 40 kD, beta polypeptide [Homo
           sapiens]
          Length = 338

 Score = 32.0 bits (71), Expect = 0.42
 Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 3/66 (4%)

Query: 45  RTIRK-GLTAATRQELLAKA-LETLLLNGVLTLVLEEDGTAVDSEDFFQLLEDDTCLMVL 102
           R+ RK G+   + QE+L K  L   L      L L EDGT + +ED+F  + D+  L++L
Sbjct: 14  RSPRKFGVAGRSCQEVLRKGCLRFQLPERGSRLCLYEDGTEL-TEDYFPSVPDNAELVLL 72

Query: 103 QSGQSW 108
             GQ+W
Sbjct: 73  TLGQAW 78


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,620,872
Number of Sequences: 37866
Number of extensions: 349966
Number of successful extensions: 718
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 706
Number of HSP's gapped (non-prelim): 7
length of query: 219
length of database: 18,247,518
effective HSP length: 98
effective length of query: 121
effective length of database: 14,536,650
effective search space: 1758934650
effective search space used: 1758934650
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.