Search of human proteins with 8923942

Search of human proteins with 8923942

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|8923942 nucleolar protein family A, member 3 [Homo sapiens]
         (64 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|8923942 nucleolar protein family A, member 3 [Homo sapiens]        137   2e-33
gi|239750380 PREDICTED: similar to hCG1640792 [Homo sapiens]           90   3e-19
gi|239744682 PREDICTED: hypothetical protein XP_002343241 [Homo ...    90   3e-19
gi|47578101 selenoprotein N, 1 isoform 2 precursor [Homo sapiens]      27   4.6  
gi|34485720 echinoderm microtubule associated protein like 5 [Ho...    27   4.6  
gi|153251840 zinc finger protein 839 [Homo sapiens]                    26   7.8  
gi|50086624 integrator complex subunit 4 [Homo sapiens]                26   7.8  

>gi|8923942 nucleolar protein family A, member 3 [Homo sapiens]
          Length = 64

 Score =  137 bits (344), Expect = 2e-33
 Identities = 64/64 (100%), Positives = 64/64 (100%)

Query: 1  MFLQYYLNEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMTQQP 60
          MFLQYYLNEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMTQQP
Sbjct: 1  MFLQYYLNEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMTQQP 60

Query: 61 RPVL 64
          RPVL
Sbjct: 61 RPVL 64


>gi|239750380 PREDICTED: similar to hCG1640792 [Homo sapiens]
          Length = 215

 Score = 90.1 bits (222), Expect = 3e-19
 Identities = 40/49 (81%), Positives = 46/49 (93%)

Query: 6   YLNEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKV 54
           +++EQGD+VYTL+KFD MGQQTC AHPA+FSPDDKYSRHRITIKKR KV
Sbjct: 61  HISEQGDQVYTLEKFDSMGQQTCLAHPAQFSPDDKYSRHRITIKKRLKV 109


>gi|239744682 PREDICTED: hypothetical protein XP_002343241 [Homo
           sapiens]
          Length = 215

 Score = 90.1 bits (222), Expect = 3e-19
 Identities = 40/49 (81%), Positives = 46/49 (93%)

Query: 6   YLNEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKV 54
           +++EQGD+VYTL+KFD MGQQTC AHPA+FSPDDKYSRHRITIKKR KV
Sbjct: 61  HISEQGDQVYTLEKFDSMGQQTCLAHPAQFSPDDKYSRHRITIKKRLKV 109


>gi|47578101 selenoprotein N, 1 isoform 2 precursor [Homo sapiens]
          Length = 556

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 1   MFLQYYLNEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKY----SRHRITIKKRFKVLM 56
           +FL   L+  GD   + ++F P+ ++   + PA    +++     S   +TI+ RF+ L+
Sbjct: 73  LFLFSSLDTDGDMYISPEEFKPIAEKLTGSTPAASCEEEELPPDPSEETLTIEARFQPLL 132

Query: 57  TQ 58
            +
Sbjct: 133 PE 134


>gi|34485720 echinoderm microtubule associated protein like 5 [Homo
            sapiens]
          Length = 1977

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 14   VYTLKKFDPMGQQTCSAHPARFSPDDKY 41
            V +LK +     + C+ H  RFSPD +Y
Sbjct: 1772 VSSLKIWGKKRDRRCAIHDIRFSPDSRY 1799


>gi|153251840 zinc finger protein 839 [Homo sapiens]
          Length = 927

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 14/47 (29%), Positives = 23/47 (48%)

Query: 8   NEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKV 54
           +EQG  +  L   DP+   + S+  A     + ++RH   +KK  KV
Sbjct: 200 DEQGSMLTPLSASDPLAVTSLSSSSAHPFISNLHTRHTEKLKKSLKV 246


>gi|50086624 integrator complex subunit 4 [Homo sapiens]
          Length = 963

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 4   QYYLNEQGDRVYTLKKFDPMGQQ 26
           Q +L +  +RVY+L+  DP G Q
Sbjct: 611 QQFLQQSLERVYSLQHLDPQGAQ 633


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.138    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,629,426
Number of Sequences: 37866
Number of extensions: 89538
Number of successful extensions: 229
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 223
Number of HSP's gapped (non-prelim): 7
length of query: 64
length of database: 18,247,518
effective HSP length: 37
effective length of query: 27
effective length of database: 16,846,476
effective search space: 454854852
effective search space used: 454854852
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.