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Search of human proteins with 8923890
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|8923890 defensin, beta 103A precursor [Homo sapiens]
(67 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|8923890 defensin, beta 103A precursor [Homo sapiens] 145 5e-36
gi|125656159 beta-defensin 103B precursor [Homo sapiens] 145 5e-36
gi|239743453 PREDICTED: hypothetical protein XP_002342852 [Homo ... 54 2e-08
gi|4826692 defensin, beta 4 precursor [Homo sapiens] 54 2e-08
gi|239742274 PREDICTED: hypothetical protein XP_002342470 [Homo ... 39 0.001
gi|239743480 PREDICTED: hypothetical protein XP_002342858 [Homo ... 36 0.006
gi|169172908 PREDICTED: similar to beta-defensin 130 [Homo sapiens] 35 0.013
gi|83699414 beta-defensin 130 [Homo sapiens] 35 0.013
gi|239744548 PREDICTED: hypothetical protein XP_002343194 [Homo ... 34 0.022
gi|82734219 beta-defensin 114 [Homo sapiens] 34 0.029
gi|239753810 PREDICTED: similar to beta-defensin 130 [Homo sapiens] 33 0.037
gi|239748374 PREDICTED: hypothetical protein XP_002346650 [Homo ... 33 0.037
gi|239742299 PREDICTED: hypothetical protein XP_002342487 [Homo ... 33 0.037
gi|169166494 PREDICTED: hypothetical protein [Homo sapiens] 33 0.064
gi|50344744 beta-defensin 108B [Homo sapiens] 31 0.18
gi|126091070 sperm associated antigen 11B isoform E precursor [H... 30 0.41
gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 27 2.7
gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 27 2.7
gi|239746014 PREDICTED: hypothetical protein LOC283846 [Homo sap... 26 5.9
gi|41872572 neuropilin 2 isoform 3 precursor [Homo sapiens] 26 5.9
gi|41872567 neuropilin 2 isoform 5 precursor [Homo sapiens] 26 5.9
gi|41872562 neuropilin 2 isoform 1 precursor [Homo sapiens] 26 5.9
gi|41872557 neuropilin 2 isoform 6 precursor [Homo sapiens] 26 5.9
gi|41872544 neuropilin 2 isoform 4 precursor [Homo sapiens] 26 5.9
gi|41872533 neuropilin 2 isoform 2 precursor [Homo sapiens] 26 5.9
gi|192449445 cartilage intermediate layer protein [Homo sapiens] 26 5.9
gi|169790853 keratin, hair, basic, 1 [Homo sapiens] 26 7.8
gi|4585710 ADAM metallopeptidase domain 11 preproprotein [Homo s... 26 7.8
gi|126131097 sperm associated antigen 11B isoform D preproprotei... 26 7.8
>gi|8923890 defensin, beta 103A precursor [Homo sapiens]
Length = 67
Score = 145 bits (367), Expect = 5e-36
Identities = 67/67 (100%), Positives = 67/67 (100%)
Query: 1 MRIHYLLFALLFLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGR 60
MRIHYLLFALLFLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGR
Sbjct: 1 MRIHYLLFALLFLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGR 60
Query: 61 KCCRRKK 67
KCCRRKK
Sbjct: 61 KCCRRKK 67
>gi|125656159 beta-defensin 103B precursor [Homo sapiens]
Length = 67
Score = 145 bits (367), Expect = 5e-36
Identities = 67/67 (100%), Positives = 67/67 (100%)
Query: 1 MRIHYLLFALLFLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGR 60
MRIHYLLFALLFLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGR
Sbjct: 1 MRIHYLLFALLFLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGR 60
Query: 61 KCCRRKK 67
KCCRRKK
Sbjct: 61 KCCRRKK 67
>gi|239743453 PREDICTED: hypothetical protein XP_002342852 [Homo
sapiens]
Length = 64
Score = 54.3 bits (129), Expect = 2e-08
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 1 MRIHYLLFALLFLFLVPVPG-HGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRG 59
MR+ YLLF+ LF+FL+P+PG GGI + + C G C + C + +QIG C G
Sbjct: 1 MRVLYLLFSFLFIFLMPLPGVFGGIGDPVT---CLKSGAICHPVFCPRRYKQIGTCGLPG 57
Query: 60 RKCCRR 65
KCC++
Sbjct: 58 TKCCKK 63
>gi|4826692 defensin, beta 4 precursor [Homo sapiens]
Length = 64
Score = 54.3 bits (129), Expect = 2e-08
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 1 MRIHYLLFALLFLFLVPVPG-HGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRG 59
MR+ YLLF+ LF+FL+P+PG GGI + + C G C + C + +QIG C G
Sbjct: 1 MRVLYLLFSFLFIFLMPLPGVFGGIGDPVT---CLKSGAICHPVFCPRRYKQIGTCGLPG 57
Query: 60 RKCCRR 65
KCC++
Sbjct: 58 TKCCKK 63
>gi|239742274 PREDICTED: hypothetical protein XP_002342470 [Homo
sapiens]
Length = 87
Score = 38.5 bits (88), Expect = 0.001
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 1 MRIHYLLFALLFLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGR 60
MR+H LL LLF L+ PG+ G + + +C G C C E+QIG C R
Sbjct: 1 MRLHLLLLILLFSILLS-PGNKGGLGPAEG-HCLNLSGVCRRDVCKVVEDQIGAC-RRKM 57
Query: 61 KCCR 64
KCCR
Sbjct: 58 KCCR 61
>gi|239743480 PREDICTED: hypothetical protein XP_002342858 [Homo
sapiens]
Length = 87
Score = 36.2 bits (82), Expect = 0.006
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 1 MRIHYLLFALLFLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGR 60
MR+H LL LL ++ P GG+ + +C G C C E+QIG C R
Sbjct: 1 MRLHLLLLILLLFSILLSPVRGGL--GPAEGHCLNLFGVCRTDVCNIVEDQIGACRRR-M 57
Query: 61 KCCR 64
KCCR
Sbjct: 58 KCCR 61
>gi|169172908 PREDICTED: similar to beta-defensin 130 [Homo
sapiens]
Length = 79
Score = 35.0 bits (79), Expect = 0.013
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 1 MRIHYLLFALLFLFLVPVP-GHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRG 59
M++H L+ LL LF+ +P G G+I ++ C G C C ++ IG C+ G
Sbjct: 1 MKLHSLISVLL-LFVTLIPKGKTGVIPGQKQ--CIALKGVCRDKLCSTLDDTIGICN-EG 56
Query: 60 RKCCRR 65
+KCCRR
Sbjct: 57 KKCCRR 62
>gi|83699414 beta-defensin 130 [Homo sapiens]
Length = 79
Score = 35.0 bits (79), Expect = 0.013
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 1 MRIHYLLFALLFLFLVPVP-GHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRG 59
M++H L+ LL LF+ +P G G+I ++ C G C C ++ IG C+ G
Sbjct: 1 MKLHSLISVLL-LFVTLIPKGKTGVIPGQKQ--CIALKGVCRDKLCSTLDDTIGICN-EG 56
Query: 60 RKCCRR 65
+KCCRR
Sbjct: 57 KKCCRR 62
>gi|239744548 PREDICTED: hypothetical protein XP_002343194 [Homo
sapiens]
Length = 192
Score = 34.3 bits (77), Expect = 0.022
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 1 MRIHYLLFALLFLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGR 60
+R+H LL LL ++ P G + + +C G C C E+QIG C R
Sbjct: 64 VRLHVLLLILLLFSILLSPVRGALGPA--EVHCLSLSGVCRRDVCKVVEDQIGACRRR-M 120
Query: 61 KCCR 64
KCCR
Sbjct: 121 KCCR 124
>gi|82734219 beta-defensin 114 [Homo sapiens]
Length = 69
Score = 33.9 bits (76), Expect = 0.029
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 1 MRIHYLLFALLFLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGR 60
MRI Y L L ++ + +P ++N + C R GRC CL E+QI CS +
Sbjct: 1 MRIFYYLHFLCYVTFI-LPATCTLVNADR---CTKRYGRCK-RDCLESEKQIDICSLPRK 55
Query: 61 KCCRRK 66
CC K
Sbjct: 56 ICCTEK 61
>gi|239753810 PREDICTED: similar to beta-defensin 130 [Homo sapiens]
Length = 128
Score = 33.5 bits (75), Expect = 0.037
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 2 RIHYLLFALL-FLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGR 60
++H L+ LL F+ L+P G+I ++ C G C C ++ IG C+ G+
Sbjct: 50 KLHSLISVLLLFVTLIPKAKMTGVIPGQKQ--CIALKGVCRDKLCSTLDDTIGICN-EGK 106
Query: 61 KCCRR 65
KCCRR
Sbjct: 107 KCCRR 111
>gi|239748374 PREDICTED: hypothetical protein XP_002346650 [Homo
sapiens]
Length = 128
Score = 33.5 bits (75), Expect = 0.037
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 2 RIHYLLFALL-FLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGR 60
++H L+ LL F+ L+P G+I ++ C G C C ++ IG C+ G+
Sbjct: 50 KLHSLISVLLLFVTLIPKAKMTGVIPGQKQ--CIALKGVCRDKLCSTLDDTIGICN-EGK 106
Query: 61 KCCRR 65
KCCRR
Sbjct: 107 KCCRR 111
>gi|239742299 PREDICTED: hypothetical protein XP_002342487 [Homo
sapiens]
Length = 128
Score = 33.5 bits (75), Expect = 0.037
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 2 RIHYLLFALL-FLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGR 60
++H L+ LL F+ L+P G+I ++ C G C C ++ IG C+ G+
Sbjct: 50 KLHSLISVLLLFVTLIPKAKMTGVIPGQKQ--CIALKGVCRDKLCSTLDDTIGICN-EGK 106
Query: 61 KCCRR 65
KCCRR
Sbjct: 107 KCCRR 111
>gi|169166494 PREDICTED: hypothetical protein [Homo sapiens]
Length = 73
Score = 32.7 bits (73), Expect = 0.064
Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
Query: 1 MRIHYLLFALLFLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGR 60
MRI LLFA+ F +P G K C G C CL E +G+C R
Sbjct: 1 MRIAVLLFAIFFFMSQVLPARGKF-----KEICERPNGSCRDF-CLETEIHVGRC-LNSR 53
Query: 61 KCC 63
CC
Sbjct: 54 PCC 56
>gi|50344744 beta-defensin 108B [Homo sapiens]
Length = 73
Score = 31.2 bits (69), Expect = 0.18
Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
Query: 1 MRIHYLLFALLFLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGR 60
MRI LLFA+ F +P G K C G C CL E +G+C +
Sbjct: 1 MRIAVLLFAIFFFMSQVLPARGKF-----KEICERPNGSCRDF-CLETEIHVGRC-LNSQ 53
Query: 61 KCC 63
CC
Sbjct: 54 PCC 56
>gi|126091070 sperm associated antigen 11B isoform E precursor
[Homo sapiens]
Length = 80
Score = 30.0 bits (66), Expect = 0.41
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 5 YLLFALLFLFLVPVPGH--GGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGRKC 62
+ LFA+LF + G GI NT+ C ++ G C + C E++ CS +C
Sbjct: 4 FFLFAVLFCLVQTNSGDVPPGIRNTI----CHMQQGICRLFFCHSGEKKRDICSDPWNRC 59
Query: 63 C 63
C
Sbjct: 60 C 60
>gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 28 LQKYYCRVRGGRCAVLSCLPKEEQIGKCST-RGRK 61
+QKY+ V+G C V LPK+E S+ RGR+
Sbjct: 164 IQKYHT-VKGHNCEVRKALPKQEMASASSSQRGRR 197
>gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 28 LQKYYCRVRGGRCAVLSCLPKEEQIGKCST-RGRK 61
+QKY+ V+G C V LPK+E S+ RGR+
Sbjct: 164 IQKYHT-VKGHNCEVRKALPKQEMASASSSQRGRR 197
>gi|239746014 PREDICTED: hypothetical protein LOC283846 [Homo
sapiens]
Length = 224
Score = 26.2 bits (56), Expect = 5.9
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 1 MRIHYLLFALLFLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRG- 59
MR+ ++LF LLF L+ H I +L K R G + + +C +G
Sbjct: 1 MRVRWMLFWLLFGLLLEFISHQCICMSLLKTILWSRNGHDGSTDVQQRAWRSNRCRQKGL 60
Query: 60 RKCCRRKK 67
R C K
Sbjct: 61 RSICMHTK 68
>gi|41872572 neuropilin 2 isoform 3 precursor [Homo sapiens]
Length = 909
Score = 26.2 bits (56), Expect = 5.9
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 12 FLFLVPVPGHGGIINTLQKYYCRVRGGRCA----VLSCLPKEEQIGKCSTR 58
F+ + P H GI L+ + CRV C+ +LS L + QI ST+
Sbjct: 406 FVRIRPQTWHSGIALRLELFGCRVTDAPCSNMLGMLSGLIADSQISASSTQ 456
>gi|41872567 neuropilin 2 isoform 5 precursor [Homo sapiens]
Length = 901
Score = 26.2 bits (56), Expect = 5.9
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 12 FLFLVPVPGHGGIINTLQKYYCRVRGGRCA----VLSCLPKEEQIGKCSTR 58
F+ + P H GI L+ + CRV C+ +LS L + QI ST+
Sbjct: 406 FVRIRPQTWHSGIALRLELFGCRVTDAPCSNMLGMLSGLIADSQISASSTQ 456
>gi|41872562 neuropilin 2 isoform 1 precursor [Homo sapiens]
Length = 931
Score = 26.2 bits (56), Expect = 5.9
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 12 FLFLVPVPGHGGIINTLQKYYCRVRGGRCA----VLSCLPKEEQIGKCSTR 58
F+ + P H GI L+ + CRV C+ +LS L + QI ST+
Sbjct: 406 FVRIRPQTWHSGIALRLELFGCRVTDAPCSNMLGMLSGLIADSQISASSTQ 456
>gi|41872557 neuropilin 2 isoform 6 precursor [Homo sapiens]
Length = 555
Score = 26.2 bits (56), Expect = 5.9
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 12 FLFLVPVPGHGGIINTLQKYYCRVRGGRCA----VLSCLPKEEQIGKCSTR 58
F+ + P H GI L+ + CRV C+ +LS L + QI ST+
Sbjct: 406 FVRIRPQTWHSGIALRLELFGCRVTDAPCSNMLGMLSGLIADSQISASSTQ 456
>gi|41872544 neuropilin 2 isoform 4 precursor [Homo sapiens]
Length = 906
Score = 26.2 bits (56), Expect = 5.9
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 12 FLFLVPVPGHGGIINTLQKYYCRVRGGRCA----VLSCLPKEEQIGKCSTR 58
F+ + P H GI L+ + CRV C+ +LS L + QI ST+
Sbjct: 406 FVRIRPQTWHSGIALRLELFGCRVTDAPCSNMLGMLSGLIADSQISASSTQ 456
>gi|41872533 neuropilin 2 isoform 2 precursor [Homo sapiens]
Length = 926
Score = 26.2 bits (56), Expect = 5.9
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 12 FLFLVPVPGHGGIINTLQKYYCRVRGGRCA----VLSCLPKEEQIGKCSTR 58
F+ + P H GI L+ + CRV C+ +LS L + QI ST+
Sbjct: 406 FVRIRPQTWHSGIALRLELFGCRVTDAPCSNMLGMLSGLIADSQISASSTQ 456
>gi|192449445 cartilage intermediate layer protein [Homo sapiens]
Length = 1184
Score = 26.2 bits (56), Expect = 5.9
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 14 FLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGRKCC 63
+L+ +P H N +Y V GRC V +C +++ +C + CC
Sbjct: 409 YLIRLP-HDCFQNATNSFYYDV--GRCPVKTCAGQQDNGIRCRDAVQNCC 455
>gi|169790853 keratin, hair, basic, 1 [Homo sapiens]
Length = 505
Score = 25.8 bits (55), Expect = 7.8
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 37 GGRCAVLSCLPKEEQIGKCSTRGRKC 62
GG C V SC +G C + RKC
Sbjct: 480 GGSCGVGSCGISSLGVGSCGSSCRKC 505
>gi|4585710 ADAM metallopeptidase domain 11 preproprotein [Homo
sapiens]
Length = 769
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 10/38 (26%)
Query: 25 INTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGRKC 62
++ L YYC GRC G+C TR R+C
Sbjct: 527 LHKLDGYYCDHEQGRC----------YGGRCKTRDRQC 554
>gi|126131097 sperm associated antigen 11B isoform D preproprotein
[Homo sapiens]
Length = 133
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 23 GIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGRKCC 63
GI NT+ C ++ G C + C E++ CS +CC
Sbjct: 77 GIRNTI----CHMQQGICRLFFCHSGEKKRDICSDPWNRCC 113
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.334 0.149 0.503
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,105,927
Number of Sequences: 37866
Number of extensions: 119859
Number of successful extensions: 369
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 355
Number of HSP's gapped (non-prelim): 31
length of query: 67
length of database: 18,247,518
effective HSP length: 40
effective length of query: 27
effective length of database: 16,732,878
effective search space: 451787706
effective search space used: 451787706
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
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FAQ |
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.