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Search of human proteins with 14149688
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|14149688 hypothetical protein LOC25912 isoform 1 [Homo
sapiens]
(219 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|14149688 hypothetical protein LOC25912 isoform 1 [Homo sapiens] 433 e-122
gi|148833486 hypothetical protein LOC25912 isoform 3 [Homo sapiens] 416 e-117
gi|41281688 hypothetical protein LOC25912 isoform 2 [Homo sapiens] 384 e-107
gi|90903231 huntingtin [Homo sapiens] 35 0.065
gi|5453822 nuclear receptor subfamily 4, group A, member 2 [Homo... 31 0.94
gi|169167744 PREDICTED: similar to hCG1641913 [Homo sapiens] 29 3.6
gi|239748517 PREDICTED: similar to hCG1641913 [Homo sapiens] 29 3.6
gi|169167587 PREDICTED: similar to hCG1641913 [Homo sapiens] 29 3.6
gi|33188443 microfilament and actin filament cross-linker protei... 29 3.6
gi|33188445 microfilament and actin filament cross-linker protei... 29 3.6
gi|4507709 tissue specific transplantation antigen P35B [Homo sa... 29 3.6
gi|45827716 ADP-ribosylation factor guanine nucleotide factor 6 ... 29 3.6
gi|117606360 ADP-ribosylation factor guanine nucleotide factor 6... 29 3.6
gi|224586880 Ras protein-specific guanine nucleotide-releasing f... 28 8.0
gi|24797099 Ras protein-specific guanine nucleotide-releasing fa... 28 8.0
gi|24797101 Ras protein-specific guanine nucleotide-releasing fa... 28 8.0
gi|32455246 beta isoform of regulatory subunit A, protein phosph... 28 8.0
gi|32455244 beta isoform of regulatory subunit A, protein phosph... 28 8.0
>gi|14149688 hypothetical protein LOC25912 isoform 1 [Homo sapiens]
Length = 219
Score = 433 bits (1114), Expect = e-122
Identities = 219/219 (100%), Positives = 219/219 (100%)
Query: 1 MASGSNWLSGVNVVLVMAYGSLDLKEEIDIRLSRVQDIKYEPQLLADDDARLLQLETQGN 60
MASGSNWLSGVNVVLVMAYGSLDLKEEIDIRLSRVQDIKYEPQLLADDDARLLQLETQGN
Sbjct: 1 MASGSNWLSGVNVVLVMAYGSLDLKEEIDIRLSRVQDIKYEPQLLADDDARLLQLETQGN 60
Query: 61 QSCYNYLYRMKALDAIRTSEIPFHSEGRHPRSLMGKNFRSYLLDLRNTSTPFKGVRKALI 120
QSCYNYLYRMKALDAIRTSEIPFHSEGRHPRSLMGKNFRSYLLDLRNTSTPFKGVRKALI
Sbjct: 61 QSCYNYLYRMKALDAIRTSEIPFHSEGRHPRSLMGKNFRSYLLDLRNTSTPFKGVRKALI 120
Query: 121 DTLLDGYETARYGTGVFGQNEYLRYQEALSELATAVKARIGSSQRHHQSAAKDLTQSPEV 180
DTLLDGYETARYGTGVFGQNEYLRYQEALSELATAVKARIGSSQRHHQSAAKDLTQSPEV
Sbjct: 121 DTLLDGYETARYGTGVFGQNEYLRYQEALSELATAVKARIGSSQRHHQSAAKDLTQSPEV 180
Query: 181 SPTTIQVTYLPSSQKSKRAKHFLELKSFKDNYNTLESTL 219
SPTTIQVTYLPSSQKSKRAKHFLELKSFKDNYNTLESTL
Sbjct: 181 SPTTIQVTYLPSSQKSKRAKHFLELKSFKDNYNTLESTL 219
>gi|148833486 hypothetical protein LOC25912 isoform 3 [Homo sapiens]
Length = 253
Score = 416 bits (1069), Expect = e-117
Identities = 219/253 (86%), Positives = 219/253 (86%), Gaps = 34/253 (13%)
Query: 1 MASGSNWLSGVNVVLVMAYGSL----------------------------------DLKE 26
MASGSNWLSGVNVVLVMAYGSL DLKE
Sbjct: 1 MASGSNWLSGVNVVLVMAYGSLVFVLLFIFVKRQIMRFAMKSRRGPHVPVGHNAPKDLKE 60
Query: 27 EIDIRLSRVQDIKYEPQLLADDDARLLQLETQGNQSCYNYLYRMKALDAIRTSEIPFHSE 86
EIDIRLSRVQDIKYEPQLLADDDARLLQLETQGNQSCYNYLYRMKALDAIRTSEIPFHSE
Sbjct: 61 EIDIRLSRVQDIKYEPQLLADDDARLLQLETQGNQSCYNYLYRMKALDAIRTSEIPFHSE 120
Query: 87 GRHPRSLMGKNFRSYLLDLRNTSTPFKGVRKALIDTLLDGYETARYGTGVFGQNEYLRYQ 146
GRHPRSLMGKNFRSYLLDLRNTSTPFKGVRKALIDTLLDGYETARYGTGVFGQNEYLRYQ
Sbjct: 121 GRHPRSLMGKNFRSYLLDLRNTSTPFKGVRKALIDTLLDGYETARYGTGVFGQNEYLRYQ 180
Query: 147 EALSELATAVKARIGSSQRHHQSAAKDLTQSPEVSPTTIQVTYLPSSQKSKRAKHFLELK 206
EALSELATAVKARIGSSQRHHQSAAKDLTQSPEVSPTTIQVTYLPSSQKSKRAKHFLELK
Sbjct: 181 EALSELATAVKARIGSSQRHHQSAAKDLTQSPEVSPTTIQVTYLPSSQKSKRAKHFLELK 240
Query: 207 SFKDNYNTLESTL 219
SFKDNYNTLESTL
Sbjct: 241 SFKDNYNTLESTL 253
>gi|41281688 hypothetical protein LOC25912 isoform 2 [Homo sapiens]
Length = 201
Score = 384 bits (986), Expect = e-107
Identities = 200/219 (91%), Positives = 201/219 (91%), Gaps = 18/219 (8%)
Query: 1 MASGSNWLSGVNVVLVMAYGSLDLKEEIDIRLSRVQDIKYEPQLLADDDARLLQLETQGN 60
MASGSNWLSGVNVVLVMAYGSLDLKEEIDIRLSRVQDIKYEPQLLADDDARLLQLETQGN
Sbjct: 1 MASGSNWLSGVNVVLVMAYGSLDLKEEIDIRLSRVQDIKYEPQLLADDDARLLQLETQGN 60
Query: 61 QSCYNYLYRMKALDAIRTSEIPFHSEGRHPRSLMGKNFRSYLLDLRNTSTPFKGVRKALI 120
Q +IPFHSEGRHPRSLMGKNFRSYLLDLRNTSTPFKGVRKALI
Sbjct: 61 Q------------------KIPFHSEGRHPRSLMGKNFRSYLLDLRNTSTPFKGVRKALI 102
Query: 121 DTLLDGYETARYGTGVFGQNEYLRYQEALSELATAVKARIGSSQRHHQSAAKDLTQSPEV 180
DTLLDGYETARYGTGVFGQNEYLRYQEALSELATAVKARIGSSQRHHQSAAKDLTQSPEV
Sbjct: 103 DTLLDGYETARYGTGVFGQNEYLRYQEALSELATAVKARIGSSQRHHQSAAKDLTQSPEV 162
Query: 181 SPTTIQVTYLPSSQKSKRAKHFLELKSFKDNYNTLESTL 219
SPTTIQVTYLPSSQKSKRAKHFLELKSFKDNYNTLESTL
Sbjct: 163 SPTTIQVTYLPSSQKSKRAKHFLELKSFKDNYNTLESTL 201
>gi|90903231 huntingtin [Homo sapiens]
Length = 3144
Score = 34.7 bits (78), Expect = 0.065
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 23/99 (23%)
Query: 7 WLSGVNVVLVMAYGSLDLKEEIDIRLSRVQDIKYEPQLLADDDARLLQLETQGNQSCYNY 66
W+SG+ +L + L + DI LSR+Q++ + P L+ SC
Sbjct: 1674 WISGILAILRV----LISQSTEDIVLSRIQELSFSPYLI----------------SC-TV 1712
Query: 67 LYRMKALDAIRTSEIPFHSEGRHPRSLMGKNFRSYLLDL 105
+ R++ D TS + HSEG+ ++L + F +LL L
Sbjct: 1713 INRLR--DGDSTSTLEEHSEGKQIKNLPEETFSRFLLQL 1749
>gi|5453822 nuclear receptor subfamily 4, group A, member 2 [Homo
sapiens]
Length = 598
Score = 30.8 bits (68), Expect = 0.94
Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 10/112 (8%)
Query: 83 FHSEGRHPRSLMGKNFRSYLLDLRNTSTPFKGVRKALIDTLLDGYETARYGTGVFGQNEY 142
+HS G + + F + +DL NT T +D Y T +
Sbjct: 24 YHSSGEYSSDFLTPEFVKFSMDLTNTEIT-ATTSLPSFSTFMDNYSTG------YDVKPP 76
Query: 143 LRYQEALSELATAVKARIGSSQRHHQSAAKDL-TQSPEVSPTTIQVTYLPSS 193
YQ LS +++K + Q H+ L QS E+ P + V Y PSS
Sbjct: 77 CLYQMPLSGQQSSIK--VEDIQMHNYQQHSHLPPQSEEMMPHSGSVYYKPSS 126
>gi|169167744 PREDICTED: similar to hCG1641913 [Homo sapiens]
Length = 506
Score = 28.9 bits (63), Expect = 3.6
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 136 VFGQNEYLRYQEALSELATAVKARIGSSQRHHQSAAKDLT 175
VFG+ L YQEA+ +AT + G + + A D+T
Sbjct: 300 VFGEEVDLAYQEAMLNMATINRTAAGLMHKFNAHVATDIT 339
>gi|239748517 PREDICTED: similar to hCG1641913 [Homo sapiens]
Length = 506
Score = 28.9 bits (63), Expect = 3.6
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 136 VFGQNEYLRYQEALSELATAVKARIGSSQRHHQSAAKDLT 175
VFG+ L YQEA+ +AT + G + + A D+T
Sbjct: 300 VFGEEVDLAYQEAMLNMATINRTAAGLMHKFNAHVATDIT 339
>gi|169167587 PREDICTED: similar to hCG1641913 [Homo sapiens]
Length = 506
Score = 28.9 bits (63), Expect = 3.6
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 136 VFGQNEYLRYQEALSELATAVKARIGSSQRHHQSAAKDLT 175
VFG+ L YQEA+ +AT + G + + A D+T
Sbjct: 300 VFGEEVDLAYQEAMLNMATINRTAAGLMHKFNAHVATDIT 339
>gi|33188443 microfilament and actin filament cross-linker protein
isoform b [Homo sapiens]
Length = 5938
Score = 28.9 bits (63), Expect = 3.6
Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 2/106 (1%)
Query: 114 GVRKALIDTLLDGYETARYGTGVFGQNEYLRYQEALSELATAVKARIGSSQRHHQSAAKD 173
G LI LDG +T RY ++ LR E +LAT ++ + ++
Sbjct: 4070 GEEVLLIQEKLDGIKT-RYADITVTSSKALRTLEQARQLATKFQSTYEELTGWLREVEEE 4128
Query: 174 LTQSPEVSPTTIQVTYLPSSQKSKRAKHFLELKSFKDNYNTLESTL 219
L S SPT Q+ QK + K +E + D N + L
Sbjct: 4129 LATSGGQSPTGEQIPQFQQRQKELK-KEVMEHRLVLDTVNEVSRAL 4173
>gi|33188445 microfilament and actin filament cross-linker protein
isoform a [Homo sapiens]
Length = 5430
Score = 28.9 bits (63), Expect = 3.6
Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 2/106 (1%)
Query: 114 GVRKALIDTLLDGYETARYGTGVFGQNEYLRYQEALSELATAVKARIGSSQRHHQSAAKD 173
G LI LDG +T RY ++ LR E +LAT ++ + ++
Sbjct: 3568 GEEVLLIQEKLDGIKT-RYADITVTSSKALRTLEQARQLATKFQSTYEELTGWLREVEEE 3626
Query: 174 LTQSPEVSPTTIQVTYLPSSQKSKRAKHFLELKSFKDNYNTLESTL 219
L S SPT Q+ QK + K +E + D N + L
Sbjct: 3627 LATSGGQSPTGEQIPQFQQRQKELK-KEVMEHRLVLDTVNEVSRAL 3671
>gi|4507709 tissue specific transplantation antigen P35B [Homo
sapiens]
Length = 321
Score = 28.9 bits (63), Expect = 3.6
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 85 SEGRHPRSLMGKNFRSYLLDLRNTSTPFKGVRKALIDTLLDGYETAR 131
S+G+ ++ R+YL D R TPFK K D YE AR
Sbjct: 276 SDGQFKKTASNSKLRTYLPDFR--FTPFKQAVKETCAWFTDNYEQAR 320
>gi|45827716 ADP-ribosylation factor guanine nucleotide factor 6
isoform b [Homo sapiens]
Length = 513
Score = 28.9 bits (63), Expect = 3.6
Identities = 41/209 (19%), Positives = 82/209 (39%), Gaps = 27/209 (12%)
Query: 23 DLKEEIDIR---LSRVQDIKYEPQL--LADDDARLLQLETQGNQSCYNYLYRMKALDAIR 77
DLK + + S+ D + +P + L D R+L +TQ + ++ ++ + A+
Sbjct: 306 DLKNAVSVHHALASKATDYEKKPNVFKLKTADWRVLLFQTQSPEEMQGWINKINCVAAVF 365
Query: 78 TSEIPFH----SEGRHPRSLMG---------KNFRSYLLDLRNTSTPFKGVRKALIDTLL 124
++ PF S+ + R L+ + +S+ L+ +T R D +
Sbjct: 366 SAP-PFPAAIGSQKKFSRPLLPATTTKLSQEEQLKSHESKLKQITTELAEHRSYPPDKKV 424
Query: 125 DGYETARYGTGVFGQNEYLRYQEALSELATAVKARIG----SSQRHHQSAAKDLTQSPEV 180
+ Y ++ YL +++ E+ ++ G S+ + K SP +
Sbjct: 425 KAKDVDEYKL----KDHYLEFEKTRYEMYVSILKEGGKELLSNDESEAAGLKKSHSSPSL 480
Query: 181 SPTTIQVTYLPSSQKSKRAKHFLELKSFK 209
+P T +T S+R H E S K
Sbjct: 481 NPDTSPITAKVKRNVSERKDHRPETPSIK 509
>gi|117606360 ADP-ribosylation factor guanine nucleotide factor 6
isoform a [Homo sapiens]
Length = 1047
Score = 28.9 bits (63), Expect = 3.6
Identities = 41/209 (19%), Positives = 82/209 (39%), Gaps = 27/209 (12%)
Query: 23 DLKEEIDIR---LSRVQDIKYEPQL--LADDDARLLQLETQGNQSCYNYLYRMKALDAIR 77
DLK + + S+ D + +P + L D R+L +TQ + ++ ++ + A+
Sbjct: 840 DLKNAVSVHHALASKATDYEKKPNVFKLKTADWRVLLFQTQSPEEMQGWINKINCVAAVF 899
Query: 78 TSEIPFH----SEGRHPRSLMG---------KNFRSYLLDLRNTSTPFKGVRKALIDTLL 124
++ PF S+ + R L+ + +S+ L+ +T R D +
Sbjct: 900 SAP-PFPAAIGSQKKFSRPLLPATTTKLSQEEQLKSHESKLKQITTELAEHRSYPPDKKV 958
Query: 125 DGYETARYGTGVFGQNEYLRYQEALSELATAVKARIG----SSQRHHQSAAKDLTQSPEV 180
+ Y ++ YL +++ E+ ++ G S+ + K SP +
Sbjct: 959 KAKDVDEYKL----KDHYLEFEKTRYEMYVSILKEGGKELLSNDESEAAGLKKSHSSPSL 1014
Query: 181 SPTTIQVTYLPSSQKSKRAKHFLELKSFK 209
+P T +T S+R H E S K
Sbjct: 1015 NPDTSPITAKVKRNVSERKDHRPETPSIK 1043
>gi|224586880 Ras protein-specific guanine nucleotide-releasing
factor 1 isoform 3 [Homo sapiens]
Length = 1257
Score = 27.7 bits (60), Expect = 8.0
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 148 ALSELATAVKARIGSSQRHHQSAAKDLTQSPEVSPTTIQVTYLPSSQKSKRAKHF 202
ALS+ ++ V R S +QS D SP SPTT P S K+K + F
Sbjct: 812 ALSKQSSEVSMREESDIDQNQSDDGDTETSPTKSPTT------PKSVKNKNSSEF 860
>gi|24797099 Ras protein-specific guanine nucleotide-releasing
factor 1 isoform 1 [Homo sapiens]
Length = 1273
Score = 27.7 bits (60), Expect = 8.0
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 148 ALSELATAVKARIGSSQRHHQSAAKDLTQSPEVSPTTIQVTYLPSSQKSKRAKHF 202
ALS+ ++ V R S +QS D SP SPTT P S K+K + F
Sbjct: 828 ALSKQSSEVSMREESDIDQNQSDDGDTETSPTKSPTT------PKSVKNKNSSEF 876
>gi|24797101 Ras protein-specific guanine nucleotide-releasing
factor 1 isoform 2 [Homo sapiens]
Length = 489
Score = 27.7 bits (60), Expect = 8.0
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 148 ALSELATAVKARIGSSQRHHQSAAKDLTQSPEVSPTTIQVTYLPSSQKSKRAKHF 202
ALS+ ++ V R S +QS D SP SPTT P S K+K + F
Sbjct: 44 ALSKQSSEVSMREESDIDQNQSDDGDTETSPTKSPTT------PKSVKNKNSSEF 92
>gi|32455246 beta isoform of regulatory subunit A, protein
phosphatase 2 isoform a [Homo sapiens]
Length = 601
Score = 27.7 bits (60), Expect = 8.0
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 8 LSGVNVVLVMAYGSLDLKEEIDIRLSRVQDIKYEPQLLADDDARLLQLETQGNQSCYNYL 67
L V +V + SL E+ +RL V+ QLL+ DD L + T Q+ +
Sbjct: 210 LDSVKSEIVPLFTSLASDEQDSVRLLAVEACVSIAQLLSQDDLETLVMPTL-RQAAEDKS 268
Query: 68 YRMKALDAIRTSEI 81
+R++ + A R SE+
Sbjct: 269 WRVRYMVADRFSEL 282
>gi|32455244 beta isoform of regulatory subunit A, protein
phosphatase 2 isoform b [Homo sapiens]
Length = 667
Score = 27.7 bits (60), Expect = 8.0
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 8 LSGVNVVLVMAYGSLDLKEEIDIRLSRVQDIKYEPQLLADDDARLLQLETQGNQSCYNYL 67
L V +V + SL E+ +RL V+ QLL+ DD L + T Q+ +
Sbjct: 210 LDSVKSEIVPLFTSLASDEQDSVRLLAVEACVSIAQLLSQDDLETLVMPTL-RQAAEDKS 268
Query: 68 YRMKALDAIRTSEI 81
+R++ + A R SE+
Sbjct: 269 WRVRYMVADRFSEL 282
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.131 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,373,662
Number of Sequences: 37866
Number of extensions: 288594
Number of successful extensions: 793
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 785
Number of HSP's gapped (non-prelim): 20
length of query: 219
length of database: 18,247,518
effective HSP length: 98
effective length of query: 121
effective length of database: 14,536,650
effective search space: 1758934650
effective search space used: 1758934650
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.