Search of human proteins with 8923019

Search of human proteins with 8923019

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|8923019 alkB, alkylation repair homolog 4 [Homo sapiens]
         (302 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|8923019 alkB, alkylation repair homolog 4 [Homo sapiens]           625   e-179
gi|195927056 alkB, alkylation repair homolog 8 [Homo sapiens]          45   6e-05
gi|14150066 spermatogenesis associated 11 [Homo sapiens]               36   0.048
gi|21040275 AlkB homolog 3 [Homo sapiens]                              32   0.69 
gi|109148544 alkB, alkylation repair homolog 6 isoform 2 [Homo s...    32   0.90 
gi|149158690 HLA-B associated transcript-2 [Homo sapiens]              31   1.5  
gi|157266298 anti-Mullerian hormone [Homo sapiens]                     30   2.6  
gi|215820619 zinc finger protein 646 [Homo sapiens]                    30   2.6  
gi|120587019 zinc finger protein 318 [Homo sapiens]                    30   2.6  
gi|224451107 AlkB homolog 2 [Homo sapiens]                             29   4.5  
gi|48717226 AlkB homolog 2 [Homo sapiens]                              29   4.5  
gi|224451103 AlkB homolog 2 [Homo sapiens]                             29   4.5  
gi|21361684 G patch domain containing 1 [Homo sapiens]                 29   5.8  

>gi|8923019 alkB, alkylation repair homolog 4 [Homo sapiens]
          Length = 302

 Score =  625 bits (1613), Expect = e-179
 Identities = 302/302 (100%), Positives = 302/302 (100%)

Query: 1   MAAAAAETPEVLRECGCKGIRTCLICERQRGSDPPWELPPAKTYRFIYCSDTGWAVGTEE 60
           MAAAAAETPEVLRECGCKGIRTCLICERQRGSDPPWELPPAKTYRFIYCSDTGWAVGTEE
Sbjct: 1   MAAAAAETPEVLRECGCKGIRTCLICERQRGSDPPWELPPAKTYRFIYCSDTGWAVGTEE 60

Query: 61  SDFEGWAFPFPGVMLIEDFVTREEEAELVRLMDRDPWKLSQSGRRKQDYGPKVNFRKQKL 120
           SDFEGWAFPFPGVMLIEDFVTREEEAELVRLMDRDPWKLSQSGRRKQDYGPKVNFRKQKL
Sbjct: 61  SDFEGWAFPFPGVMLIEDFVTREEEAELVRLMDRDPWKLSQSGRRKQDYGPKVNFRKQKL 120

Query: 121 KTEGFCGLPSFSREVVRRMGLYPGLEGFRPVEQCNLDYCPERGSAIDPHLDDAWLWGERL 180
           KTEGFCGLPSFSREVVRRMGLYPGLEGFRPVEQCNLDYCPERGSAIDPHLDDAWLWGERL
Sbjct: 121 KTEGFCGLPSFSREVVRRMGLYPGLEGFRPVEQCNLDYCPERGSAIDPHLDDAWLWGERL 180

Query: 181 VSLNLLSPTVLSMCREAPGSLLLCSAPSAAPEALVDSVIAPSRSVLCQEVEVAIPLPARS 240
           VSLNLLSPTVLSMCREAPGSLLLCSAPSAAPEALVDSVIAPSRSVLCQEVEVAIPLPARS
Sbjct: 181 VSLNLLSPTVLSMCREAPGSLLLCSAPSAAPEALVDSVIAPSRSVLCQEVEVAIPLPARS 240

Query: 241 LLVLTGAARHQWKHAIHRRHIEARRVCVTFRELSAEFGPGGRQQELGQELLRIALSFQGR 300
           LLVLTGAARHQWKHAIHRRHIEARRVCVTFRELSAEFGPGGRQQELGQELLRIALSFQGR
Sbjct: 241 LLVLTGAARHQWKHAIHRRHIEARRVCVTFRELSAEFGPGGRQQELGQELLRIALSFQGR 300

Query: 301 PV 302
           PV
Sbjct: 301 PV 302


>gi|195927056 alkB, alkylation repair homolog 8 [Homo sapiens]
          Length = 664

 Score = 45.4 bits (106), Expect = 6e-05
 Identities = 47/200 (23%), Positives = 80/200 (40%), Gaps = 42/200 (21%)

Query: 71  PGVMLIEDFVTREEEAELVRLM------DRDPWKLSQSGRRKQDYGPKVNFRKQKLKTEG 124
           PG+M++E+ ++ EEE  L+  +      D    + S   RR + +G + ++    +  + 
Sbjct: 135 PGLMVVEEIISSEEEKMLLESVDWTEDTDNQNSQKSLKHRRVKHFGYEFHYENNNVDKDK 194

Query: 125 --FCGLPSFSREVVRRMGLYPGLEGFRPVEQCNLDYCPERGSAIDPHLDDAWLWGERLVS 182
               GLP      + +  L  G    +P +     Y  E G  I  H+D    + + +VS
Sbjct: 195 PLSGGLPDICESFLEKW-LRKGYIKHKPDQMTINQY--EPGQGIPAHIDTHSAFEDEIVS 251

Query: 183 LNLLSPTVLSMCREAPGSLLLCSAPSAAPEALVDSVIAPSRSVLCQEVEVAIPLPARSLL 242
           L+L S  V+   +   G                              + V + LP RSLL
Sbjct: 252 LSLGSEIVMDF-KHPDG------------------------------IAVPVMLPRRSLL 280

Query: 243 VLTGAARHQWKHAIHRRHIE 262
           V+TG +R+ W H I  R  +
Sbjct: 281 VMTGESRYLWTHGITCRKFD 300


>gi|14150066 spermatogenesis associated 11 [Homo sapiens]
          Length = 221

 Score = 35.8 bits (81), Expect = 0.048
 Identities = 33/125 (26%), Positives = 46/125 (36%), Gaps = 40/125 (32%)

Query: 166 IDPHLDDAWLWGERLVSLNLLSPTVLSMCR-EAPGSLLLCSAPSAAPEALVDSVIAPSRS 224
           I PH+D     G  +  L+LLSP+V+ +   + PG  L                      
Sbjct: 118 IKPHVDSIKFCGATIAGLSLLSPSVMRLVHTQEPGEWL---------------------- 155

Query: 225 VLCQEVEVAIPLPARSLLVLTGAARHQWKHAI---------HRRHIEARRVCVTFRELSA 275
                    + L   SL +L G+AR+ + H I          RR    RR+ V  R L  
Sbjct: 156 --------ELLLEPGSLYILRGSARYDFSHEILRDEESFFGERRIPRGRRISVICRSLPE 207

Query: 276 EFGPG 280
             GPG
Sbjct: 208 GMGPG 212


>gi|21040275 AlkB homolog 3 [Homo sapiens]
          Length = 286

 Score = 32.0 bits (71), Expect = 0.69
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 232 VAIPLPARSLLVLTGAARHQWKHAIHRR-HIEARRVCVTFR 271
           V IPL   +LL++ GA +  W+H + +  H    RV +TFR
Sbjct: 235 VKIPLDHGTLLIMEGATQADWQHRVPKEYHSREPRVNLTFR 275


>gi|109148544 alkB, alkylation repair homolog 6 isoform 2 [Homo
           sapiens]
          Length = 266

 Score = 31.6 bits (70), Expect = 0.90
 Identities = 53/200 (26%), Positives = 82/200 (41%), Gaps = 36/200 (18%)

Query: 71  PGVMLIEDFVTREEEAELVRLMDRDP---WKLSQSGRRKQDYGPKVNFRKQKLKTEGFCG 127
           P +  + DF+++EEE  L+R +   P   W    SGR+ Q++G   + R    +      
Sbjct: 49  PVIYYVPDFISKEEEEYLLRQVFNAPKPKW-TQLSGRKLQNWGGLPHPRGMVPER----- 102

Query: 128 LPSFSR---EVVRRMGLYPGLEGFRPVEQCNLDYCPERGSAIDPHLDDAWLWGERLVSLN 184
           LP + +   + V  + L+ GL     +      Y P  G  I PH +D  L+   + +++
Sbjct: 103 LPPWLQRYVDKVSNLSLFGGLPANHVLVN---QYLP--GEGIMPH-EDGPLYYPTVSTIS 156

Query: 185 LLSPTVLSMCR-EAPGSLLLCSAPSAAPEALVDSVIAPSRSVLCQEVEVAIPLPARSLLV 243
           L S TVL       P        P   P         P+ S+L         L  RSLLV
Sbjct: 157 LGSHTVLDFYEPRRPEDDDPTEQPRPPPR--------PTTSLL---------LEPRSLLV 199

Query: 244 LTGAARHQWKHAIHRRHIEA 263
           L G A  +  H I    ++A
Sbjct: 200 LRGPAYTRLLHGIAAARVDA 219


>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
          Length = 2157

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 35/150 (23%), Positives = 58/150 (38%), Gaps = 9/150 (6%)

Query: 29  QRGSDPPWELPPAKTYRFIYCSDTGWAVG-TEESDFEGWAFPFPGVMLIEDFVTREEEAE 87
           + G +PP E+PP  T         G  +G T +   +G  +P     L   F  R+++ +
Sbjct: 596 KEGPEPPEEVPPPTTPPVPKVEPKGDGIGPTRQPPSQGLGYPKYQKSLPPRF-QRQQQEQ 654

Query: 88  LVRLMDRDPWKLSQSGRRKQDYGPKVNFRKQKLKTEGFCGLPSFSREVVRRMGLYPGLEG 147
           L++   +  W+  Q G       P         +      +P+          LYPG  G
Sbjct: 655 LLKQQQQHQWQQHQQGS-----APPTPVPPSPPQPVTLGAVPAPQAPPPPPKALYPGALG 709

Query: 148 FRPVEQCNLDYCPERGSAIDPHLDDAWLWG 177
            RP     +++ P R   I P++D   L G
Sbjct: 710 -RPPPMPPMNFDP-RWMMIPPYVDPRLLQG 737


>gi|157266298 anti-Mullerian hormone [Homo sapiens]
          Length = 560

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 29/91 (31%), Positives = 35/91 (38%), Gaps = 4/91 (4%)

Query: 160 PERGSAIDPHLDDAWLWGERLVSLNLLSPTVLSMCREAPGSLLLCSAPSAA----PEALV 215
           P R SA    LD   L G     +NL  P  L    +    LLL   P+AA    P  L 
Sbjct: 305 PARASAPRLALDPDALAGFPQGLVNLSDPAALERLLDGEEPLLLLLRPTAATTGDPAPLH 364

Query: 216 DSVIAPSRSVLCQEVEVAIPLPARSLLVLTG 246
           D   AP  + L + V   +   A  L  L G
Sbjct: 365 DPTSAPWATALARRVAAELQAAAAELRSLPG 395


>gi|215820619 zinc finger protein 646 [Homo sapiens]
          Length = 1832

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 71  PGVMLIEDFVTREEEAELVRLMDRDPWKLSQSGRRKQDYGPKVNFRKQKLKTEGFCGL 128
           P  +L+ +  T +EE +    +D  P+K S+ GR  +  G  VN R      E  C L
Sbjct: 440 PAPLLLAE-TTHKEEEDPTTTLDHRPYKCSECGRAYRHRGSLVNHRHSHRTGEYQCSL 496


>gi|120587019 zinc finger protein 318 [Homo sapiens]
          Length = 2279

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 25/124 (20%)

Query: 164  SAIDPH-LDDA-------WLWGERLVSLNLL-------SPTVLSMCREAPGSLLLCSAPS 208
            ++I PH +DD+       ++W   +   NLL           L    E P  +++  +P 
Sbjct: 1799 TSIGPHSIDDSNLNHGNRYMWEGEVKQPNLLMIDKEAEQSNKLMTGSETPSKVVIKLSPQ 1858

Query: 209  AAP--EALVDSVIAPSRSVLCQE---VEVAIP-----LPARSLLVLTGAARHQWKHAIHR 258
            A    +A +DS ++ +RS+L  +   V+++ P      PARS + LTG+ + Q    +  
Sbjct: 1859 ACSFTKAKLDSFLSEARSLLNPQDTPVKISAPELLLHSPARSAMCLTGSPQEQGVSVVSE 1918

Query: 259  RHIE 262
              +E
Sbjct: 1919 EGLE 1922


>gi|224451107 AlkB homolog 2 [Homo sapiens]
          Length = 261

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 5/55 (9%)

Query: 220 APSRSVLCQEVEVAIPLPARSLLVLTGAARHQWKHAIH-RRHIEARRVCVTFREL 273
           +PSR V      V +PL   SLL++       W H++  R+ + A RV +TFR++
Sbjct: 206 SPSRRVAV----VRLPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKI 256


>gi|48717226 AlkB homolog 2 [Homo sapiens]
          Length = 261

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 5/55 (9%)

Query: 220 APSRSVLCQEVEVAIPLPARSLLVLTGAARHQWKHAIH-RRHIEARRVCVTFREL 273
           +PSR V      V +PL   SLL++       W H++  R+ + A RV +TFR++
Sbjct: 206 SPSRRVAV----VRLPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKI 256


>gi|224451103 AlkB homolog 2 [Homo sapiens]
          Length = 261

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 5/55 (9%)

Query: 220 APSRSVLCQEVEVAIPLPARSLLVLTGAARHQWKHAIH-RRHIEARRVCVTFREL 273
           +PSR V      V +PL   SLL++       W H++  R+ + A RV +TFR++
Sbjct: 206 SPSRRVAV----VRLPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKI 256


>gi|21361684 G patch domain containing 1 [Homo sapiens]
          Length = 931

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 19/114 (16%)

Query: 69  PFPGVMLIEDFVTREEEAELVRLMDRDPWKLSQSGRRKQDYGPKVNFRKQKLKTEG---- 124
           P PG  L++D +T  + +    L+ +  WK        Q  GP+V  R ++ K +     
Sbjct: 137 PIPGATLLDDLITPAKLSVGFELLRKMGWK------EGQGVGPRVKRRPRRQKPDPGVKI 190

Query: 125 -FCGLPSFSREVVRRM--GLYPGLEGFRPVEQCNLDYCPERG------SAIDPH 169
             C LP  S E          P    F P +   +D+ P+          +DPH
Sbjct: 191 YGCALPPGSSEGSEGEDDDYLPDNVTFAPKDVTPVDFTPKDNVHGLAYKGLDPH 244


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.138    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,745,570
Number of Sequences: 37866
Number of extensions: 682720
Number of successful extensions: 1433
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1425
Number of HSP's gapped (non-prelim): 19
length of query: 302
length of database: 18,247,518
effective HSP length: 102
effective length of query: 200
effective length of database: 14,385,186
effective search space: 2877037200
effective search space used: 2877037200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.