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Search of human proteins with 8922756
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|8922756 transmembrane protein 39A [Homo sapiens]
(488 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|8922756 transmembrane protein 39A [Homo sapiens] 1008 0.0
gi|169234667 transmembrane protein 39B [Homo sapiens] 503 e-142
gi|42734375 ankyrin repeat and sterile alpha motif domain contai... 35 0.15
gi|28373103 ATPase, Ca++ transporting, ubiquitous isoform a [Hom... 33 0.76
gi|28373115 ATPase, Ca++ transporting, ubiquitous isoform c [Hom... 33 0.76
gi|28373113 ATPase, Ca++ transporting, ubiquitous isoform f [Hom... 33 0.76
gi|28373111 ATPase, Ca++ transporting, ubiquitous isoform c [Hom... 33 0.76
gi|28373109 ATPase, Ca++ transporting, ubiquitous isoform b [Hom... 33 0.76
gi|28373107 ATPase, Ca++ transporting, ubiquitous isoform d [Hom... 33 0.76
gi|28373105 ATPase, Ca++ transporting, ubiquitous isoform e [Hom... 33 0.76
gi|169216359 PREDICTED: hypothetical protein [Homo sapiens] 32 1.3
gi|169216600 PREDICTED: hypothetical protein [Homo sapiens] 32 1.3
gi|38045938 ring finger protein 144 [Homo sapiens] 30 3.8
gi|52317138 olfactory receptor, family 5, subfamily R, member 1 ... 30 6.5
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens] 30 6.5
gi|66730481 neuregulin 3 [Homo sapiens] 29 8.5
gi|7657347 mitochondrial carrier 2 [Homo sapiens] 29 8.5
gi|24429592 chondroitin sulfate N-acetylgalactosaminyltransferas... 29 8.5
>gi|8922756 transmembrane protein 39A [Homo sapiens]
Length = 488
Score = 1008 bits (2606), Expect = 0.0
Identities = 488/488 (100%), Positives = 488/488 (100%)
Query: 1 MPGGRRGPSRQQLSRSALPSLQTLVGGGCGNGTGLRNRNGSAIGLPVPPITALITPGPVR 60
MPGGRRGPSRQQLSRSALPSLQTLVGGGCGNGTGLRNRNGSAIGLPVPPITALITPGPVR
Sbjct: 1 MPGGRRGPSRQQLSRSALPSLQTLVGGGCGNGTGLRNRNGSAIGLPVPPITALITPGPVR 60
Query: 61 HCQIPDLPVDGSLLFEFLFFIYLLVALFIQYINIYKTVWWYPYNHPASCTSLNFHLIDYH 120
HCQIPDLPVDGSLLFEFLFFIYLLVALFIQYINIYKTVWWYPYNHPASCTSLNFHLIDYH
Sbjct: 61 HCQIPDLPVDGSLLFEFLFFIYLLVALFIQYINIYKTVWWYPYNHPASCTSLNFHLIDYH 120
Query: 121 LAAFITVMLARRLVWALISEATKAGAASMIHYMVLISARLVLLTLCGWVLCWTLVNLFRS 180
LAAFITVMLARRLVWALISEATKAGAASMIHYMVLISARLVLLTLCGWVLCWTLVNLFRS
Sbjct: 121 LAAFITVMLARRLVWALISEATKAGAASMIHYMVLISARLVLLTLCGWVLCWTLVNLFRS 180
Query: 181 HSVLNLLFLGYPFGVYVPLCCFHQDSRAHLLLTDYNYVVQHEAVEESASTVGGLAKSKDF 240
HSVLNLLFLGYPFGVYVPLCCFHQDSRAHLLLTDYNYVVQHEAVEESASTVGGLAKSKDF
Sbjct: 181 HSVLNLLFLGYPFGVYVPLCCFHQDSRAHLLLTDYNYVVQHEAVEESASTVGGLAKSKDF 240
Query: 241 LSLLLESLKEQFNNATPIPTHSCPLSPDLIRNEVECLKADFNHRIKEVLFNSLFSAYYVA 300
LSLLLESLKEQFNNATPIPTHSCPLSPDLIRNEVECLKADFNHRIKEVLFNSLFSAYYVA
Sbjct: 241 LSLLLESLKEQFNNATPIPTHSCPLSPDLIRNEVECLKADFNHRIKEVLFNSLFSAYYVA 300
Query: 301 FLPLCFVKSTQYYDMRWSCEHLIMVWINAFVMLTTQLLPSKYCDLLHKSAAHLGKWQKLE 360
FLPLCFVKSTQYYDMRWSCEHLIMVWINAFVMLTTQLLPSKYCDLLHKSAAHLGKWQKLE
Sbjct: 301 FLPLCFVKSTQYYDMRWSCEHLIMVWINAFVMLTTQLLPSKYCDLLHKSAAHLGKWQKLE 360
Query: 361 HGSYSNAPQHIWSENTIWPQGVLVRHSRCLYRAMGPYNVAVPSDVSHARFYFLFHRPLRL 420
HGSYSNAPQHIWSENTIWPQGVLVRHSRCLYRAMGPYNVAVPSDVSHARFYFLFHRPLRL
Sbjct: 361 HGSYSNAPQHIWSENTIWPQGVLVRHSRCLYRAMGPYNVAVPSDVSHARFYFLFHRPLRL 420
Query: 421 LNLLILIEGSVVFYQLYSLLRSEKWNHTLSMALILFCNYYVLFKLLRDRIVLGRAYSYPL 480
LNLLILIEGSVVFYQLYSLLRSEKWNHTLSMALILFCNYYVLFKLLRDRIVLGRAYSYPL
Sbjct: 421 LNLLILIEGSVVFYQLYSLLRSEKWNHTLSMALILFCNYYVLFKLLRDRIVLGRAYSYPL 480
Query: 481 NSYELKAN 488
NSYELKAN
Sbjct: 481 NSYELKAN 488
>gi|169234667 transmembrane protein 39B [Homo sapiens]
Length = 492
Score = 503 bits (1295), Expect = e-142
Identities = 256/487 (52%), Positives = 335/487 (68%), Gaps = 20/487 (4%)
Query: 3 GGRRGPSRQQLSRSALPSLQTLVGGGCGNGTGL--------RNRNGSAIGLPVPPITALI 54
GGRRGP+R R+ L + GG G+ T R R+ S GL PP+ A
Sbjct: 2 GGRRGPNRTSYCRNPLCEPGSS-GGSSGSHTSSASVTSVRSRTRSSSGTGLSSPPL-ATQ 59
Query: 55 TPGPVRHCQIPDLPVDGSLLFEFLFFIYLLVALFIQYINIYKTVWWYPYNHPASCTSLNF 114
T P++HC+IP+LPV S+LFE F L+ALF+ YINIYKTVWWYP +HP S TSLNF
Sbjct: 60 TVVPLQHCKIPELPVQASILFELQLFFCQLIALFVHYINIYKTVWWYPPSHPPSHTSLNF 119
Query: 115 HLIDYHLAAFITVMLARRLVWALISEATKAGAASMIHYMVLISARLVLLTLCGWVLCWTL 174
HLID++L T++L RR + +++ EA++ G S+ ++L R +LT GW LC +L
Sbjct: 120 HLIDFNLLMVTTIVLGRRFIGSIVKEASQRGKVSLFRSILLFLTRFTVLTATGWSLCRSL 179
Query: 175 VNLFRSHSVLNLLFLGYPFGVYVPLCCFHQDSRAHLLLTDYNYVVQHEAVEESASTVGGL 234
++LFR++S LNLLFL YPFG+Y+P + D R L H A V GL
Sbjct: 180 IHLFRTYSFLNLLFLCYPFGMYIPFLQLNCDLRKTSLFN-------HMASMGPREAVSGL 232
Query: 235 AKSKDFLSLLLESLKE---QFNNATPIPTHSCPLSPDLIRNEVECLKADFNHRIKEVLFN 291
AKS+D+L L E+ K+ Q +PTH+C LSP LIR+EVE LK DFN R+KEVL +
Sbjct: 233 AKSRDYLLTLRETWKQHTRQLYGPDAMPTHACCLSPSLIRSEVEFLKMDFNWRMKEVLVS 292
Query: 292 SLFSAYYVAFLPLCFVKSTQYYDMRWSCEHLIMVWINAFVMLTTQLLPSKYCDLLHKSAA 351
S+ SAYYVAF+P+ FVK+T YYD RWSCE ++V I+ V+L LLP+ YCDLLHK+AA
Sbjct: 293 SMLSAYYVAFVPVWFVKNTHYYDKRWSCELFLLVSISTSVILMQHLLPASYCDLLHKAAA 352
Query: 352 HLGKWQKLEHGSYSNAPQHIWSENTIWPQGVLVRHSRCLYRAMGPYNVAVPSDVSHARFY 411
HLG WQK++ SN QH W+E +WPQGVLV+HS+ +Y+A+G YNVA+PSDVSH RF+
Sbjct: 353 HLGCWQKVDPALCSNVLQHPWTEECMWPQGVLVKHSKNVYKAVGHYNVAIPSDVSHFRFH 412
Query: 412 FLFHRPLRLLNLLILIEGSVVFYQLYSLLRSEKWNHTLSMALILFCNYYVLFKLLRDRIV 471
F F +PLR+LN+L+L+EG+V+ YQLYSL+ SEKW+ T+S+ALILF NYY FKLLRDR+V
Sbjct: 413 FFFSKPLRILNILLLLEGAVIVYQLYSLMSSEKWHQTISLALILFSNYYAFFKLLRDRLV 472
Query: 472 LGRAYSY 478
LG+AYSY
Sbjct: 473 LGKAYSY 479
>gi|42734375 ankyrin repeat and sterile alpha motif domain
containing 3 [Homo sapiens]
Length = 656
Score = 35.0 bits (79), Expect = 0.15
Identities = 32/143 (22%), Positives = 62/143 (43%), Gaps = 9/143 (6%)
Query: 141 ATKAGAASMIHYMVLISARLVLLTLCGWVLCWTLVNLFRSHSVLNLLFLGYPFGVYVPLC 200
A+ G S+ ++++ A L + + GW + + H V LL G V P+C
Sbjct: 109 ASSCGNESIAYFLLQQGAELEMKDIQGWTALFHCTSAGHQHMVRFLLDSGANANVREPIC 168
Query: 201 CF----HQDSRAHLLLTDY--NYVVQHEAVEESASTVGGLAKSKDFLSLLLESLKEQFNN 254
F + H ++ Y N+ V+ +A + S +T LAK + ++ +L + ++
Sbjct: 169 GFTPLMEAAAAGHEIIVQYFLNHGVKVDARDHSGATARMLAKQYGHMKIV--ALMDTYSP 226
Query: 255 ATPIPTHSCPLS-PDLIRNEVEC 276
+ P + P DL ++ C
Sbjct: 227 SLPKSLYRSPEKYEDLSSSDESC 249
>gi|28373103 ATPase, Ca++ transporting, ubiquitous isoform a [Homo
sapiens]
Length = 999
Score = 32.7 bits (73), Expect = 0.76
Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 17/132 (12%)
Query: 72 SLLFEFLFFIYLLVALFIQYINIYKTVWWYPYNHPASCTSLNFHLIDYHLAAFITVMLAR 131
+L+ +LFF YL + +++ + WW+ Y+ A +NF Y L F+
Sbjct: 827 ALISGWLFFRYLAIGVYVGLATVAAATWWFVYD--AEGPHINF----YQLRNFLKCSEDN 880
Query: 132 RLVWALISEATKAGAASMIHYMVLISARLV-----------LLTLCGWVLCWTLVNLFRS 180
L + E ++ + + VL++ + LL + W+ W LV + S
Sbjct: 881 PLFAGIDCEVFESRFPTTMALSVLVTIEMCNALNSVSENQSLLRMPPWMNPWLLVAVAMS 940
Query: 181 HSVLNLLFLGYP 192
++ L+ L P
Sbjct: 941 MALHFLILLVPP 952
>gi|28373115 ATPase, Ca++ transporting, ubiquitous isoform c [Homo
sapiens]
Length = 1029
Score = 32.7 bits (73), Expect = 0.76
Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 17/132 (12%)
Query: 72 SLLFEFLFFIYLLVALFIQYINIYKTVWWYPYNHPASCTSLNFHLIDYHLAAFITVMLAR 131
+L+ +LFF YL + +++ + WW+ Y+ A +NF Y L F+
Sbjct: 827 ALISGWLFFRYLAIGVYVGLATVAAATWWFVYD--AEGPHINF----YQLRNFLKCSEDN 880
Query: 132 RLVWALISEATKAGAASMIHYMVLISARLV-----------LLTLCGWVLCWTLVNLFRS 180
L + E ++ + + VL++ + LL + W+ W LV + S
Sbjct: 881 PLFAGIDCEVFESRFPTTMALSVLVTIEMCNALNSVSENQSLLRMPPWMNPWLLVAVAMS 940
Query: 181 HSVLNLLFLGYP 192
++ L+ L P
Sbjct: 941 MALHFLILLVPP 952
>gi|28373113 ATPase, Ca++ transporting, ubiquitous isoform f [Homo
sapiens]
Length = 998
Score = 32.7 bits (73), Expect = 0.76
Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 17/132 (12%)
Query: 72 SLLFEFLFFIYLLVALFIQYINIYKTVWWYPYNHPASCTSLNFHLIDYHLAAFITVMLAR 131
+L+ +LFF YL + +++ + WW+ Y+ A +NF Y L F+
Sbjct: 827 ALISGWLFFRYLAIGVYVGLATVAAATWWFVYD--AEGPHINF----YQLRNFLKCSEDN 880
Query: 132 RLVWALISEATKAGAASMIHYMVLISARLV-----------LLTLCGWVLCWTLVNLFRS 180
L + E ++ + + VL++ + LL + W+ W LV + S
Sbjct: 881 PLFAGIDCEVFESRFPTTMALSVLVTIEMCNALNSVSENQSLLRMPPWMNPWLLVAVAMS 940
Query: 181 HSVLNLLFLGYP 192
++ L+ L P
Sbjct: 941 MALHFLILLVPP 952
>gi|28373111 ATPase, Ca++ transporting, ubiquitous isoform c [Homo
sapiens]
Length = 1029
Score = 32.7 bits (73), Expect = 0.76
Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 17/132 (12%)
Query: 72 SLLFEFLFFIYLLVALFIQYINIYKTVWWYPYNHPASCTSLNFHLIDYHLAAFITVMLAR 131
+L+ +LFF YL + +++ + WW+ Y+ A +NF Y L F+
Sbjct: 827 ALISGWLFFRYLAIGVYVGLATVAAATWWFVYD--AEGPHINF----YQLRNFLKCSEDN 880
Query: 132 RLVWALISEATKAGAASMIHYMVLISARLV-----------LLTLCGWVLCWTLVNLFRS 180
L + E ++ + + VL++ + LL + W+ W LV + S
Sbjct: 881 PLFAGIDCEVFESRFPTTMALSVLVTIEMCNALNSVSENQSLLRMPPWMNPWLLVAVAMS 940
Query: 181 HSVLNLLFLGYP 192
++ L+ L P
Sbjct: 941 MALHFLILLVPP 952
>gi|28373109 ATPase, Ca++ transporting, ubiquitous isoform b [Homo
sapiens]
Length = 1043
Score = 32.7 bits (73), Expect = 0.76
Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 17/132 (12%)
Query: 72 SLLFEFLFFIYLLVALFIQYINIYKTVWWYPYNHPASCTSLNFHLIDYHLAAFITVMLAR 131
+L+ +LFF YL + +++ + WW+ Y+ A +NF Y L F+
Sbjct: 827 ALISGWLFFRYLAIGVYVGLATVAAATWWFVYD--AEGPHINF----YQLRNFLKCSEDN 880
Query: 132 RLVWALISEATKAGAASMIHYMVLISARLV-----------LLTLCGWVLCWTLVNLFRS 180
L + E ++ + + VL++ + LL + W+ W LV + S
Sbjct: 881 PLFAGIDCEVFESRFPTTMALSVLVTIEMCNALNSVSENQSLLRMPPWMNPWLLVAVAMS 940
Query: 181 HSVLNLLFLGYP 192
++ L+ L P
Sbjct: 941 MALHFLILLVPP 952
>gi|28373107 ATPase, Ca++ transporting, ubiquitous isoform d [Homo
sapiens]
Length = 1044
Score = 32.7 bits (73), Expect = 0.76
Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 17/132 (12%)
Query: 72 SLLFEFLFFIYLLVALFIQYINIYKTVWWYPYNHPASCTSLNFHLIDYHLAAFITVMLAR 131
+L+ +LFF YL + +++ + WW+ Y+ A +NF Y L F+
Sbjct: 827 ALISGWLFFRYLAIGVYVGLATVAAATWWFVYD--AEGPHINF----YQLRNFLKCSEDN 880
Query: 132 RLVWALISEATKAGAASMIHYMVLISARLV-----------LLTLCGWVLCWTLVNLFRS 180
L + E ++ + + VL++ + LL + W+ W LV + S
Sbjct: 881 PLFAGIDCEVFESRFPTTMALSVLVTIEMCNALNSVSENQSLLRMPPWMNPWLLVAVAMS 940
Query: 181 HSVLNLLFLGYP 192
++ L+ L P
Sbjct: 941 MALHFLILLVPP 952
>gi|28373105 ATPase, Ca++ transporting, ubiquitous isoform e [Homo
sapiens]
Length = 1052
Score = 32.7 bits (73), Expect = 0.76
Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 17/132 (12%)
Query: 72 SLLFEFLFFIYLLVALFIQYINIYKTVWWYPYNHPASCTSLNFHLIDYHLAAFITVMLAR 131
+L+ +LFF YL + +++ + WW+ Y+ A +NF Y L F+
Sbjct: 827 ALISGWLFFRYLAIGVYVGLATVAAATWWFVYD--AEGPHINF----YQLRNFLKCSEDN 880
Query: 132 RLVWALISEATKAGAASMIHYMVLISARLV-----------LLTLCGWVLCWTLVNLFRS 180
L + E ++ + + VL++ + LL + W+ W LV + S
Sbjct: 881 PLFAGIDCEVFESRFPTTMALSVLVTIEMCNALNSVSENQSLLRMPPWMNPWLLVAVAMS 940
Query: 181 HSVLNLLFLGYP 192
++ L+ L P
Sbjct: 941 MALHFLILLVPP 952
>gi|169216359 PREDICTED: hypothetical protein [Homo sapiens]
Length = 225
Score = 32.0 bits (71), Expect = 1.3
Identities = 24/52 (46%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 17 ALPSLQTLVGGGCGNGTGLRNRNGSAIGLPVPPITALITPGPVRHCQIPDLP 68
+L LQ+ GGGCG G GL RN S P P A +PG R CQ P P
Sbjct: 59 SLADLQSSRGGGCG-GWGLLQRNASEDPPPPGPFRA-PSPGSPR-CQRPASP 107
>gi|169216600 PREDICTED: hypothetical protein [Homo sapiens]
Length = 225
Score = 32.0 bits (71), Expect = 1.3
Identities = 24/52 (46%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 17 ALPSLQTLVGGGCGNGTGLRNRNGSAIGLPVPPITALITPGPVRHCQIPDLP 68
+L LQ+ GGGCG G GL RN S P P A +PG R CQ P P
Sbjct: 59 SLADLQSSRGGGCG-GWGLLQRNASEDPPPPGPFRA-PSPGSPR-CQRPASP 107
>gi|38045938 ring finger protein 144 [Homo sapiens]
Length = 292
Score = 30.4 bits (67), Expect = 3.8
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 238 KDFLSLLLESLKEQFNNATPIPTHSCPLSPDLIRNEVECL-KADFNHRIKEVLF 290
K ++ LL+ KE A P +CP L NE+EC+ A+ R K++ F
Sbjct: 48 KQYVELLI---KEGLETAISCPDAACPKQGHLQENEIECMVAAEIMQRYKKLQF 98
>gi|52317138 olfactory receptor, family 5, subfamily R, member 1
[Homo sapiens]
Length = 324
Score = 29.6 bits (65), Expect = 6.5
Identities = 19/80 (23%), Positives = 34/80 (42%)
Query: 111 SLNFHLIDYHLAAFITVMLARRLVWALISEATKAGAASMIHYMVLISARLVLLTLCGWVL 170
++ FH L F+T M+ + A ++ S +HY L+S R+ + + +
Sbjct: 91 TIPFHACATQLGCFLTFMITECFLLASMAYDCYVAICSPLHYSTLMSRRVCIQLVAVPYI 150
Query: 171 CWTLVNLFRSHSVLNLLFLG 190
LV LF + L + G
Sbjct: 151 YSFLVALFHTVITFRLTYCG 170
>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
Length = 1003
Score = 29.6 bits (65), Expect = 6.5
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 14 SRSALPSLQTLVG---GGCGNGTGLRNRNGSAIGLPVPPITALITPGPVRHCQIPDLP-- 68
S+ LPS+ +L+G G + G N GS LP PP + +P RH P LP
Sbjct: 405 SQPILPSVLSLLGLPTPGPSHSDGSFNLLGSDAHLPPPPTLSSGSPPQPRHPIQPSLPGT 464
Query: 69 VDGSL 73
GSL
Sbjct: 465 TSGSL 469
>gi|66730481 neuregulin 3 [Homo sapiens]
Length = 696
Score = 29.3 bits (64), Expect = 8.5
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 3 GGRRGPSRQQLSRSALPSLQTLVGGGCGNGTGLRNRNGSAIGLPVP 48
GG GP+ QQL S +P T+ G + +GL+ + ++I + +P
Sbjct: 503 GGIVGPAYQQLEESRIPDQDTIPCQGY-SSSGLKTQRNTSINMQLP 547
>gi|7657347 mitochondrial carrier 2 [Homo sapiens]
Length = 303
Score = 29.3 bits (64), Expect = 8.5
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 27/111 (24%)
Query: 109 CTSLNFHLIDYHLAAFITVMLARRLVWALISEATKAGAASMIHYMVLISARLVLLTLCG- 167
C SL + + Y L + ++ M + S+A ASM+ Y ++ + L+ + CG
Sbjct: 196 CNSLAYLVNTYALDSGVSTMNEMKSY----SQAVTGFFASMLTYPFVLVSNLMAVNNCGL 251
Query: 168 -------------WVLCWTLV----NLFRSHSVLNLLFLGYPFGVYVPLCC 201
W+ CW ++ N+ R +S L F PFG CC
Sbjct: 252 AGGCPPYSPIYTSWIDCWCMLQKEGNMSRGNS---LFFRKVPFG--KTYCC 297
>gi|24429592 chondroitin sulfate N-acetylgalactosaminyltransferase 2
[Homo sapiens]
Length = 542
Score = 29.3 bits (64), Expect = 8.5
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 201 CFHQDSRAHLLLTDYNYVVQHEAVEESASTVGGLAKSKDFLSLLLESLKEQFN 253
C HQD + HL + + E + + S + + +F + L SL E+FN
Sbjct: 296 CIHQDKKIHLTVVYFG----KEGLSKVKSILESVTSESNFHNYTLVSLNEEFN 344
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.327 0.141 0.454
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,159,700
Number of Sequences: 37866
Number of extensions: 878734
Number of successful extensions: 2786
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2773
Number of HSP's gapped (non-prelim): 18
length of query: 488
length of database: 18,247,518
effective HSP length: 106
effective length of query: 382
effective length of database: 14,233,722
effective search space: 5437281804
effective search space used: 5437281804
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.