BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|88955003 PREDICTED: similar to CG12975 [Homo sapiens] (135 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|169163644 PREDICTED: similar to CG12975 [Homo sapiens] 283 3e-77 gi|88955003 PREDICTED: similar to CG12975 [Homo sapiens] 283 3e-77 gi|41190515 PREDICTED: similar to CG12975 [Homo sapiens] 283 3e-77 gi|7705477 tRNA methyltransferase 11-2 homolog [Homo sapiens] 232 6e-62 gi|14149657 NULP1 [Homo sapiens] 32 0.16 gi|212549557 zinc finger protein 860 [Homo sapiens] 30 0.45 gi|113417486 PREDICTED: hypothetical protein [Homo sapiens] 29 1.3 gi|239740777 PREDICTED: hypothetical protein [Homo sapiens] 29 1.3 gi|145309317 tetratricopeptide repeat domain 30A [Homo sapiens] 27 5.0 gi|239741144 PREDICTED: hypothetical protein XP_002342119 [Homo ... 26 8.6 gi|4826706 EBV-induced G protein-coupled receptor 2 [Homo sapiens] 26 8.6 >gi|169163644 PREDICTED: similar to CG12975 [Homo sapiens] Length = 135 Score = 283 bits (724), Expect = 3e-77 Identities = 135/135 (100%), Positives = 135/135 (100%) Query: 1 MKLLTHNLLSSHVRGMGSRGFPLCLQATEVRICPVEFNPQFMWHHTWHVSYVVHMIPKVE 60 MKLLTHNLLSSHVRGMGSRGFPLCLQATEVRICPVEFNPQFMWHHTWHVSYVVHMIPKVE Sbjct: 1 MKLLTHNLLSSHVRGMGSRGFPLCLQATEVRICPVEFNPQFMWHHTWHVSYVVHMIPKVE 60 Query: 61 WSAFLEAADSLRLIQMPKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPIS 120 WSAFLEAADSLRLIQMPKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPIS Sbjct: 61 WSAFLEAADSLRLIQMPKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPIS 120 Query: 121 RGIPNMLLSEEETES 135 RGIPNMLLSEEETES Sbjct: 121 RGIPNMLLSEEETES 135 >gi|88955003 PREDICTED: similar to CG12975 [Homo sapiens] Length = 135 Score = 283 bits (724), Expect = 3e-77 Identities = 135/135 (100%), Positives = 135/135 (100%) Query: 1 MKLLTHNLLSSHVRGMGSRGFPLCLQATEVRICPVEFNPQFMWHHTWHVSYVVHMIPKVE 60 MKLLTHNLLSSHVRGMGSRGFPLCLQATEVRICPVEFNPQFMWHHTWHVSYVVHMIPKVE Sbjct: 1 MKLLTHNLLSSHVRGMGSRGFPLCLQATEVRICPVEFNPQFMWHHTWHVSYVVHMIPKVE 60 Query: 61 WSAFLEAADSLRLIQMPKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPIS 120 WSAFLEAADSLRLIQMPKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPIS Sbjct: 61 WSAFLEAADSLRLIQMPKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPIS 120 Query: 121 RGIPNMLLSEEETES 135 RGIPNMLLSEEETES Sbjct: 121 RGIPNMLLSEEETES 135 >gi|41190515 PREDICTED: similar to CG12975 [Homo sapiens] Length = 135 Score = 283 bits (724), Expect = 3e-77 Identities = 135/135 (100%), Positives = 135/135 (100%) Query: 1 MKLLTHNLLSSHVRGMGSRGFPLCLQATEVRICPVEFNPQFMWHHTWHVSYVVHMIPKVE 60 MKLLTHNLLSSHVRGMGSRGFPLCLQATEVRICPVEFNPQFMWHHTWHVSYVVHMIPKVE Sbjct: 1 MKLLTHNLLSSHVRGMGSRGFPLCLQATEVRICPVEFNPQFMWHHTWHVSYVVHMIPKVE 60 Query: 61 WSAFLEAADSLRLIQMPKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPIS 120 WSAFLEAADSLRLIQMPKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPIS Sbjct: 61 WSAFLEAADSLRLIQMPKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPIS 120 Query: 121 RGIPNMLLSEEETES 135 RGIPNMLLSEEETES Sbjct: 121 RGIPNMLLSEEETES 135 >gi|7705477 tRNA methyltransferase 11-2 homolog [Homo sapiens] Length = 125 Score = 232 bits (592), Expect = 6e-62 Identities = 118/135 (87%), Positives = 121/135 (89%), Gaps = 10/135 (7%) Query: 1 MKLLTHNLLSSHVRGMGSRGFPLCLQATEVRICPVEFNPQFMWHHTWHVSYVVHMIPKVE 60 MKLLTHNLLSSHVRG+GSRGFPL LQATEVRICPVEFNP F V MIPKVE Sbjct: 1 MKLLTHNLLSSHVRGVGSRGFPLRLQATEVRICPVEFNPNF----------VARMIPKVE 50 Query: 61 WSAFLEAADSLRLIQMPKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPIS 120 WSAFLEAAD+LRLIQ+PKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPIS Sbjct: 51 WSAFLEAADNLRLIQVPKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPIS 110 Query: 121 RGIPNMLLSEEETES 135 RGIPNMLLSEEETES Sbjct: 111 RGIPNMLLSEEETES 125 >gi|14149657 NULP1 [Homo sapiens] Length = 676 Score = 32.0 bits (71), Expect = 0.16 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 57 PKVEWSAFLEAADSLRLIQMPKG-PVEGYEENEEFLRTMHHLLLEVEVIE 105 PK W + + S+RL++ KG +E +EE+ + H L+ VE +E Sbjct: 222 PKSTWPRYSKPGLSMRLLESKKGLSFFAFEHSEEYQQAQHKFLVAVESME 271 >gi|212549557 zinc finger protein 860 [Homo sapiens] Length = 632 Score = 30.4 bits (67), Expect = 0.45 Identities = 18/51 (35%), Positives = 25/51 (49%) Query: 70 SLRLIQMPKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPIS 120 S R+ PK + EN F ++ L EV + E + QC ESG+ F S Sbjct: 192 SQRISSRPKIHISNNYENNFFHSSLLTLKQEVHIREKSFQCNESGKAFNCS 242 >gi|113417486 PREDICTED: hypothetical protein [Homo sapiens] Length = 1612 Score = 28.9 bits (63), Expect = 1.3 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 4/52 (7%) Query: 11 SHVRGMGSRGFPLC----LQATEVRICPVEFNPQFMWHHTWHVSYVVHMIPK 58 SH+ G G L L+AT + NP F W+H H S + H I + Sbjct: 1500 SHIHGDGYGPLDLTQRMELEATRGIVIGPVINPTFQWNHCDHPSRINHTIQR 1551 >gi|239740777 PREDICTED: hypothetical protein [Homo sapiens] Length = 1612 Score = 28.9 bits (63), Expect = 1.3 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 4/52 (7%) Query: 11 SHVRGMGSRGFPLC----LQATEVRICPVEFNPQFMWHHTWHVSYVVHMIPK 58 SH+ G G L L+AT + NP F W+H H S + H I + Sbjct: 1500 SHIHGDGYGPLDLTQRMELEATRGIVIGPVINPTFQWNHCDHPSRINHTIQR 1551 >gi|145309317 tetratricopeptide repeat domain 30A [Homo sapiens] Length = 665 Score = 26.9 bits (58), Expect = 5.0 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%) Query: 66 EAADSLRLIQMPKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPISRGIPN 125 EA + +R I+ + + + N R M+HL + V ++ GTL C + F ISR I + Sbjct: 516 EAEELMRKIEKEEEQLSYDDPN----RKMYHLCI-VNLVIGTLYCAKGNYEFGISRVIKS 570 Query: 126 M 126 + Sbjct: 571 L 571 >gi|239741144 PREDICTED: hypothetical protein XP_002342119 [Homo sapiens] Length = 347 Score = 26.2 bits (56), Expect = 8.6 Identities = 17/35 (48%), Positives = 18/35 (51%) Query: 75 QMPKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQ 109 QM G VEG + E L HLL V V GTLQ Sbjct: 12 QMRVGKVEGRIQAEVGLHDAPHLLRHVVVQVGTLQ 46 >gi|4826706 EBV-induced G protein-coupled receptor 2 [Homo sapiens] Length = 361 Score = 26.2 bits (56), Expect = 8.6 Identities = 10/22 (45%), Positives = 16/22 (72%) Query: 47 WHVSYVVHMIPKVEWSAFLEAA 68 +HV+ + HMI K+ +S FLE + Sbjct: 260 YHVAIIQHMIKKLRFSNFLECS 281 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.322 0.136 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,362,259 Number of Sequences: 37866 Number of extensions: 218254 Number of successful extensions: 404 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 394 Number of HSP's gapped (non-prelim): 11 length of query: 135 length of database: 18,247,518 effective HSP length: 91 effective length of query: 44 effective length of database: 14,801,712 effective search space: 651275328 effective search space used: 651275328 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.