Search of human proteins with 88955003

Search of human proteins with 88955003

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|88955003 PREDICTED: similar to CG12975 [Homo sapiens]
         (135 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169163644 PREDICTED: similar to CG12975 [Homo sapiens]             283   3e-77
gi|88955003 PREDICTED: similar to CG12975 [Homo sapiens]              283   3e-77
gi|41190515 PREDICTED: similar to CG12975 [Homo sapiens]              283   3e-77
gi|7705477 tRNA methyltransferase 11-2 homolog [Homo sapiens]         232   6e-62
gi|14149657 NULP1 [Homo sapiens]                                       32   0.16 
gi|212549557 zinc finger protein 860 [Homo sapiens]                    30   0.45 
gi|113417486 PREDICTED: hypothetical protein [Homo sapiens]            29   1.3  
gi|239740777 PREDICTED: hypothetical protein [Homo sapiens]            29   1.3  
gi|145309317 tetratricopeptide repeat domain 30A [Homo sapiens]        27   5.0  
gi|239741144 PREDICTED: hypothetical protein XP_002342119 [Homo ...    26   8.6  
gi|4826706 EBV-induced G protein-coupled receptor 2 [Homo sapiens]     26   8.6  

>gi|169163644 PREDICTED: similar to CG12975 [Homo sapiens]
          Length = 135

 Score =  283 bits (724), Expect = 3e-77
 Identities = 135/135 (100%), Positives = 135/135 (100%)

Query: 1   MKLLTHNLLSSHVRGMGSRGFPLCLQATEVRICPVEFNPQFMWHHTWHVSYVVHMIPKVE 60
           MKLLTHNLLSSHVRGMGSRGFPLCLQATEVRICPVEFNPQFMWHHTWHVSYVVHMIPKVE
Sbjct: 1   MKLLTHNLLSSHVRGMGSRGFPLCLQATEVRICPVEFNPQFMWHHTWHVSYVVHMIPKVE 60

Query: 61  WSAFLEAADSLRLIQMPKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPIS 120
           WSAFLEAADSLRLIQMPKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPIS
Sbjct: 61  WSAFLEAADSLRLIQMPKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPIS 120

Query: 121 RGIPNMLLSEEETES 135
           RGIPNMLLSEEETES
Sbjct: 121 RGIPNMLLSEEETES 135


>gi|88955003 PREDICTED: similar to CG12975 [Homo sapiens]
          Length = 135

 Score =  283 bits (724), Expect = 3e-77
 Identities = 135/135 (100%), Positives = 135/135 (100%)

Query: 1   MKLLTHNLLSSHVRGMGSRGFPLCLQATEVRICPVEFNPQFMWHHTWHVSYVVHMIPKVE 60
           MKLLTHNLLSSHVRGMGSRGFPLCLQATEVRICPVEFNPQFMWHHTWHVSYVVHMIPKVE
Sbjct: 1   MKLLTHNLLSSHVRGMGSRGFPLCLQATEVRICPVEFNPQFMWHHTWHVSYVVHMIPKVE 60

Query: 61  WSAFLEAADSLRLIQMPKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPIS 120
           WSAFLEAADSLRLIQMPKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPIS
Sbjct: 61  WSAFLEAADSLRLIQMPKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPIS 120

Query: 121 RGIPNMLLSEEETES 135
           RGIPNMLLSEEETES
Sbjct: 121 RGIPNMLLSEEETES 135


>gi|41190515 PREDICTED: similar to CG12975 [Homo sapiens]
          Length = 135

 Score =  283 bits (724), Expect = 3e-77
 Identities = 135/135 (100%), Positives = 135/135 (100%)

Query: 1   MKLLTHNLLSSHVRGMGSRGFPLCLQATEVRICPVEFNPQFMWHHTWHVSYVVHMIPKVE 60
           MKLLTHNLLSSHVRGMGSRGFPLCLQATEVRICPVEFNPQFMWHHTWHVSYVVHMIPKVE
Sbjct: 1   MKLLTHNLLSSHVRGMGSRGFPLCLQATEVRICPVEFNPQFMWHHTWHVSYVVHMIPKVE 60

Query: 61  WSAFLEAADSLRLIQMPKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPIS 120
           WSAFLEAADSLRLIQMPKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPIS
Sbjct: 61  WSAFLEAADSLRLIQMPKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPIS 120

Query: 121 RGIPNMLLSEEETES 135
           RGIPNMLLSEEETES
Sbjct: 121 RGIPNMLLSEEETES 135


>gi|7705477 tRNA methyltransferase 11-2 homolog [Homo sapiens]
          Length = 125

 Score =  232 bits (592), Expect = 6e-62
 Identities = 118/135 (87%), Positives = 121/135 (89%), Gaps = 10/135 (7%)

Query: 1   MKLLTHNLLSSHVRGMGSRGFPLCLQATEVRICPVEFNPQFMWHHTWHVSYVVHMIPKVE 60
           MKLLTHNLLSSHVRG+GSRGFPL LQATEVRICPVEFNP F          V  MIPKVE
Sbjct: 1   MKLLTHNLLSSHVRGVGSRGFPLRLQATEVRICPVEFNPNF----------VARMIPKVE 50

Query: 61  WSAFLEAADSLRLIQMPKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPIS 120
           WSAFLEAAD+LRLIQ+PKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPIS
Sbjct: 51  WSAFLEAADNLRLIQVPKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPIS 110

Query: 121 RGIPNMLLSEEETES 135
           RGIPNMLLSEEETES
Sbjct: 111 RGIPNMLLSEEETES 125


>gi|14149657 NULP1 [Homo sapiens]
          Length = 676

 Score = 32.0 bits (71), Expect = 0.16
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 57  PKVEWSAFLEAADSLRLIQMPKG-PVEGYEENEEFLRTMHHLLLEVEVIE 105
           PK  W  + +   S+RL++  KG     +E +EE+ +  H  L+ VE +E
Sbjct: 222 PKSTWPRYSKPGLSMRLLESKKGLSFFAFEHSEEYQQAQHKFLVAVESME 271


>gi|212549557 zinc finger protein 860 [Homo sapiens]
          Length = 632

 Score = 30.4 bits (67), Expect = 0.45
 Identities = 18/51 (35%), Positives = 25/51 (49%)

Query: 70  SLRLIQMPKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPIS 120
           S R+   PK  +    EN  F  ++  L  EV + E + QC ESG+ F  S
Sbjct: 192 SQRISSRPKIHISNNYENNFFHSSLLTLKQEVHIREKSFQCNESGKAFNCS 242


>gi|113417486 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 1612

 Score = 28.9 bits (63), Expect = 1.3
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 4/52 (7%)

Query: 11   SHVRGMGSRGFPLC----LQATEVRICPVEFNPQFMWHHTWHVSYVVHMIPK 58
            SH+ G G     L     L+AT   +     NP F W+H  H S + H I +
Sbjct: 1500 SHIHGDGYGPLDLTQRMELEATRGIVIGPVINPTFQWNHCDHPSRINHTIQR 1551


>gi|239740777 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 1612

 Score = 28.9 bits (63), Expect = 1.3
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 4/52 (7%)

Query: 11   SHVRGMGSRGFPLC----LQATEVRICPVEFNPQFMWHHTWHVSYVVHMIPK 58
            SH+ G G     L     L+AT   +     NP F W+H  H S + H I +
Sbjct: 1500 SHIHGDGYGPLDLTQRMELEATRGIVIGPVINPTFQWNHCDHPSRINHTIQR 1551


>gi|145309317 tetratricopeptide repeat domain 30A [Homo sapiens]
          Length = 665

 Score = 26.9 bits (58), Expect = 5.0
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%)

Query: 66  EAADSLRLIQMPKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPISRGIPN 125
           EA + +R I+  +  +   + N    R M+HL + V ++ GTL C +    F ISR I +
Sbjct: 516 EAEELMRKIEKEEEQLSYDDPN----RKMYHLCI-VNLVIGTLYCAKGNYEFGISRVIKS 570

Query: 126 M 126
           +
Sbjct: 571 L 571


>gi|239741144 PREDICTED: hypothetical protein XP_002342119 [Homo
           sapiens]
          Length = 347

 Score = 26.2 bits (56), Expect = 8.6
 Identities = 17/35 (48%), Positives = 18/35 (51%)

Query: 75  QMPKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQ 109
           QM  G VEG  + E  L    HLL  V V  GTLQ
Sbjct: 12  QMRVGKVEGRIQAEVGLHDAPHLLRHVVVQVGTLQ 46


>gi|4826706 EBV-induced G protein-coupled receptor 2 [Homo sapiens]
          Length = 361

 Score = 26.2 bits (56), Expect = 8.6
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 47  WHVSYVVHMIPKVEWSAFLEAA 68
           +HV+ + HMI K+ +S FLE +
Sbjct: 260 YHVAIIQHMIKKLRFSNFLECS 281


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.136    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,362,259
Number of Sequences: 37866
Number of extensions: 218254
Number of successful extensions: 404
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 394
Number of HSP's gapped (non-prelim): 11
length of query: 135
length of database: 18,247,518
effective HSP length: 91
effective length of query: 44
effective length of database: 14,801,712
effective search space: 651275328
effective search space used: 651275328
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.