Search of human proteins with 88703062

Search of human proteins with 88703062

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|88703062 ribosomal protein S4, Y-linked 2 [Homo sapiens]
         (263 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|88703062 ribosomal protein S4, Y-linked 2 [Homo sapiens]           537   e-153
gi|4506727 ribosomal protein S4, Y-linked 1 Y isoform [Homo sapi...   509   e-145
gi|4506725 ribosomal protein S4, X-linked X isoform [Homo sapiens]    497   e-141
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa...    30   2.1  
gi|4507229 aldehyde dehydrogenase 5A1 isoform 2 precursor [Homo ...    29   3.7  
gi|25777721 aldehyde dehydrogenase 5A1 isoform 1 precursor [Homo...    29   3.7  
gi|33239440 zinc finger protein, Y-linked isoform 1 [Homo sapiens]     28   6.2  
gi|223717973 zinc finger protein, Y-linked isoform 3 [Homo sapiens]    28   6.2  
gi|223717965 zinc finger protein, Y-linked isoform 2 [Homo sapiens]    28   6.2  
gi|21361146 zinc finger protein 76 (expressed in testis) [Homo s...    28   6.2  
gi|71061446 zinc finger protein, X-linked [Homo sapiens]               28   6.2  
gi|157502179 tetratricopeptide repeat domain 21A isoform 1 [Homo...    28   6.2  
gi|157502177 tetratricopeptide repeat domain 21A isoform 2 [Homo...    28   6.2  
gi|79749430 FRAS1-related extracellular matrix protein 2 precurs...    28   8.2  

>gi|88703062 ribosomal protein S4, Y-linked 2 [Homo sapiens]
          Length = 263

 Score =  537 bits (1384), Expect = e-153
 Identities = 263/263 (100%), Positives = 263/263 (100%)

Query: 1   MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE 60
           MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE
Sbjct: 1   MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE 60

Query: 61  VKKICMQHFLKIDGKVRVDITYPAGFIDVISIEKTGEHFRLVYNTKGCFAVHRITVEEAK 120
           VKKICMQHFLKIDGKVRVDITYPAGFIDVISIEKTGEHFRLVYNTKGCFAVHRITVEEAK
Sbjct: 61  VKKICMQHFLKIDGKVRVDITYPAGFIDVISIEKTGEHFRLVYNTKGCFAVHRITVEEAK 120

Query: 121 YKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNV 180
           YKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNV
Sbjct: 121 YKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNV 180

Query: 181 CMVIAGANLGRVGVITNRERHPGSCDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPR 240
           CMVIAGANLGRVGVITNRERHPGSCDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPR
Sbjct: 181 CMVIAGANLGRVGVITNRERHPGSCDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPR 240

Query: 241 GKGIRLTIAEERDKRLAAKQSSG 263
           GKGIRLTIAEERDKRLAAKQSSG
Sbjct: 241 GKGIRLTIAEERDKRLAAKQSSG 263


>gi|4506727 ribosomal protein S4, Y-linked 1 Y isoform [Homo
           sapiens]
          Length = 263

 Score =  509 bits (1311), Expect = e-145
 Identities = 247/263 (93%), Positives = 256/263 (97%)

Query: 1   MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE 60
           MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE
Sbjct: 1   MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE 60

Query: 61  VKKICMQHFLKIDGKVRVDITYPAGFIDVISIEKTGEHFRLVYNTKGCFAVHRITVEEAK 120
           VKKICMQ F+KIDGKVRVD+TYPAGF+DVISIEKTGEHFRLVY+TKG FAVHRITVEEAK
Sbjct: 61  VKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAK 120

Query: 121 YKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNV 180
           YKLCKVRKITVG KGIPHLVTHDARTIRYPDP+IKVNDTVQIDLGTGKI +FIKFDTGN+
Sbjct: 121 YKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNL 180

Query: 181 CMVIAGANLGRVGVITNRERHPGSCDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPR 240
           CMVI GANLGRVGVITNRERHPGS DVVHVKDANGNSFATR+SNIFVIGNGNKPWISLPR
Sbjct: 181 CMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPR 240

Query: 241 GKGIRLTIAEERDKRLAAKQSSG 263
           GKGIRLT+AEERDKRLA KQSSG
Sbjct: 241 GKGIRLTVAEERDKRLATKQSSG 263


>gi|4506725 ribosomal protein S4, X-linked X isoform [Homo sapiens]
          Length = 263

 Score =  497 bits (1280), Expect = e-141
 Identities = 241/263 (91%), Positives = 252/263 (95%)

Query: 1   MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE 60
           MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLI+FLRNRLKYALTGDE
Sbjct: 1   MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60

Query: 61  VKKICMQHFLKIDGKVRVDITYPAGFIDVISIEKTGEHFRLVYNTKGCFAVHRITVEEAK 120
           VKKICMQ F+KIDGKVR DITYPAGF+DVISI+KTGE+FRL+Y+TKG FAVHRIT EEAK
Sbjct: 61  VKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAK 120

Query: 121 YKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNV 180
           YKLCKVRKI VGTKGIPHLVTHDARTIRYPDPLIKVNDT+QIDL TGKIT FIKFDTGN+
Sbjct: 121 YKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNL 180

Query: 181 CMVIAGANLGRVGVITNRERHPGSCDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPR 240
           CMV  GANLGR+GVITNRERHPGS DVVHVKDANGNSFATR+SNIFVIG GNKPWISLPR
Sbjct: 181 CMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPR 240

Query: 241 GKGIRLTIAEERDKRLAAKQSSG 263
           GKGIRLTIAEERDKRLAAKQSSG
Sbjct: 241 GKGIRLTIAEERDKRLAAKQSSG 263


>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
            sapiens]
          Length = 2715

 Score = 30.0 bits (66), Expect = 2.1
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 38   LRECLPLIVFLRNRLKYALTGDEVKKICMQHFLKIDGKVRVDITYPAGF 86
            L  CL    F+  R  Y +  D+ K  C +H   +DGK   +I  P GF
Sbjct: 1655 LSSCLSNFHFMCARASYCIFQDDKKVFCQKHTDLLDGK---EIVNPDGF 1700


>gi|4507229 aldehyde dehydrogenase 5A1 isoform 2 precursor [Homo
           sapiens]
          Length = 535

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 11/81 (13%)

Query: 157 NDTVQIDLGTGKITSFIKFDTGNVCMVIAGA------NLGRVGVITNRERHPGSCDVVHV 210
           N   ++ +  G +  FI FD+ NV   +AGA      N G+  V +N+           +
Sbjct: 298 NSVKRVSMELGGLAPFIVFDSANVDQAVAGAMASKFRNTGQTCVCSNQFLVQRG-----I 352

Query: 211 KDANGNSFATRISNIFVIGNG 231
            DA   +FA  +     +GNG
Sbjct: 353 HDAFVKAFAEAMKKNLRVGNG 373


>gi|25777721 aldehyde dehydrogenase 5A1 isoform 1 precursor [Homo
           sapiens]
          Length = 548

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 11/81 (13%)

Query: 157 NDTVQIDLGTGKITSFIKFDTGNVCMVIAGA------NLGRVGVITNRERHPGSCDVVHV 210
           N   ++ +  G +  FI FD+ NV   +AGA      N G+  V +N+           +
Sbjct: 311 NSVKRVSMELGGLAPFIVFDSANVDQAVAGAMASKFRNTGQTCVCSNQFLVQRG-----I 365

Query: 211 KDANGNSFATRISNIFVIGNG 231
            DA   +FA  +     +GNG
Sbjct: 366 HDAFVKAFAEAMKKNLRVGNG 386


>gi|33239440 zinc finger protein, Y-linked isoform 1 [Homo sapiens]
          Length = 801

 Score = 28.5 bits (62), Expect = 6.2
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 12/78 (15%)

Query: 90  ISIEKTGEHF---------RLVYNTKGCFAVHRITV---EEAKYKLCKVRKITVGTKGIP 137
           I  ++ G+HF         ++V+  KG   +H+      E A+  L     + V +K  P
Sbjct: 484 IECDECGKHFSHAGALFTHKMVHKEKGANKMHKCKFCEYETAEQGLLNRHLLAVHSKNFP 543

Query: 138 HLVTHDARTIRYPDPLIK 155
           H+     +  R+P  L K
Sbjct: 544 HICVECGKGFRHPSELRK 561


>gi|223717973 zinc finger protein, Y-linked isoform 3 [Homo sapiens]
          Length = 610

 Score = 28.5 bits (62), Expect = 6.2
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 12/78 (15%)

Query: 90  ISIEKTGEHF---------RLVYNTKGCFAVHRITV---EEAKYKLCKVRKITVGTKGIP 137
           I  ++ G+HF         ++V+  KG   +H+      E A+  L     + V +K  P
Sbjct: 293 IECDECGKHFSHAGALFTHKMVHKEKGANKMHKCKFCEYETAEQGLLNRHLLAVHSKNFP 352

Query: 138 HLVTHDARTIRYPDPLIK 155
           H+     +  R+P  L K
Sbjct: 353 HICVECGKGFRHPSELRK 370


>gi|223717965 zinc finger protein, Y-linked isoform 2 [Homo sapiens]
          Length = 724

 Score = 28.5 bits (62), Expect = 6.2
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 12/78 (15%)

Query: 90  ISIEKTGEHF---------RLVYNTKGCFAVHRITV---EEAKYKLCKVRKITVGTKGIP 137
           I  ++ G+HF         ++V+  KG   +H+      E A+  L     + V +K  P
Sbjct: 407 IECDECGKHFSHAGALFTHKMVHKEKGANKMHKCKFCEYETAEQGLLNRHLLAVHSKNFP 466

Query: 138 HLVTHDARTIRYPDPLIK 155
           H+     +  R+P  L K
Sbjct: 467 HICVECGKGFRHPSELRK 484


>gi|21361146 zinc finger protein 76 (expressed in testis) [Homo
           sapiens]
          Length = 570

 Score = 28.5 bits (62), Expect = 6.2
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 187 ANLGRVGVITNRERHPGSCDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRL 246
           +N+ +V V T+    P +C   H     G + AT   N   I  G KP++    G G R 
Sbjct: 269 SNIRKVHVRTHTGERPYTCPEPHC--GRGFTSATNYKNHVRIHTGEKPYVCTVPGCGKRF 326

Query: 247 T 247
           T
Sbjct: 327 T 327


>gi|71061446 zinc finger protein, X-linked [Homo sapiens]
          Length = 805

 Score = 28.5 bits (62), Expect = 6.2
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 12/78 (15%)

Query: 90  ISIEKTGEHF---------RLVYNTKGCFAVHRITV---EEAKYKLCKVRKITVGTKGIP 137
           I  ++ G+HF         ++V+  KG   +H+      E A+  L     + V +K  P
Sbjct: 488 IECDECGKHFSHAGALFTHKMVHKEKGANKMHKCKFCEYETAEQGLLNRHLLAVHSKNFP 547

Query: 138 HLVTHDARTIRYPDPLIK 155
           H+     +  R+P  L K
Sbjct: 548 HICVECGKGFRHPSELKK 565


>gi|157502179 tetratricopeptide repeat domain 21A isoform 1 [Homo
           sapiens]
          Length = 1321

 Score = 28.5 bits (62), Expect = 6.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 101 LVYNTKGCFAVHRITVEEAKYKLCKVRKITVGT 133
           L+Y  K C  + R  ++E +Y L ++RK   GT
Sbjct: 79  LIYAHKRCEIIDREAIQELEYSLKEIRKTVSGT 111


>gi|157502177 tetratricopeptide repeat domain 21A isoform 2 [Homo
           sapiens]
          Length = 1320

 Score = 28.5 bits (62), Expect = 6.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 101 LVYNTKGCFAVHRITVEEAKYKLCKVRKITVGT 133
           L+Y  K C  + R  ++E +Y L ++RK   GT
Sbjct: 79  LIYAHKRCEIIDREAIQELEYSLKEIRKTVSGT 111


>gi|79749430 FRAS1-related extracellular matrix protein 2 precursor
            [Homo sapiens]
          Length = 3169

 Score = 28.1 bits (61), Expect = 8.2
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 13/88 (14%)

Query: 50   NRLKYALTGDEVKKICMQHFLKIDGKVRVDITYPAGFIDVISIEKTGEHFRLVYNTKGCF 109
            N++ Y  T D+  K+    F   DG+  V  T+     DV              N K   
Sbjct: 1490 NKIYYIHTADDEVKMDSFEFQVTDGRNPVFRTFRISISDVD-------------NKKPVV 1536

Query: 110  AVHRITVEEAKYKLCKVRKITVGTKGIP 137
             +H++ V E++ KL    ++TV  +  P
Sbjct: 1537 TIHKLVVSESENKLITPFELTVEDRDTP 1564


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.140    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,313,046
Number of Sequences: 37866
Number of extensions: 462187
Number of successful extensions: 637
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 632
Number of HSP's gapped (non-prelim): 14
length of query: 263
length of database: 18,247,518
effective HSP length: 100
effective length of query: 163
effective length of database: 14,460,918
effective search space: 2357129634
effective search space used: 2357129634
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.