Search of human proteins with 78711824

Search of human proteins with 78711824

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|78711824 succinate dehydrogenase complex, subunit C isoform
4 precursor [Homo sapiens]
         (116 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|78711824 succinate dehydrogenase complex, subunit C isoform 4...   233   3e-62
gi|4506863 succinate dehydrogenase complex, subunit C isoform 1 ...   223   2e-59
gi|78711822 succinate dehydrogenase complex, subunit C isoform 3...   222   6e-59
gi|155369255 hypothetical protein LOC642502 [Homo sapiens]            222   6e-59
gi|78711820 succinate dehydrogenase complex, subunit C isoform 2...    49   9e-07
gi|239749866 PREDICTED: similar to succinate dehydrogenase compl...    39   7e-04
gi|239744168 PREDICTED: similar to succinate dehydrogenase compl...    39   7e-04
gi|45505180 per1-like domain containing 1 [Homo sapiens]               30   0.54 
gi|52218852 olfactory receptor, family 10, subfamily K, member 1...    28   2.0  
gi|37675379 dendritic cell-associated C-type lectin 1 isoform e ...    26   7.7  
gi|13384604 dendritic cell-associated C-type lectin 1 isoform b ...    26   7.7  
gi|37675373 dendritic cell-associated C-type lectin 1 isoform a ...    26   7.7  
gi|126116596 asp (abnormal spindle)-like, microcephaly associate...    26   7.7  
gi|118572606 hemicentin 1 [Homo sapiens]                               26   7.7  
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho...    26   7.7  

>gi|78711824 succinate dehydrogenase complex, subunit C isoform 4
           precursor [Homo sapiens]
          Length = 116

 Score =  233 bits (593), Expect = 3e-62
 Identities = 116/116 (100%), Positives = 116/116 (100%)

Query: 1   MAALLLSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALI 60
           MAALLLSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALI
Sbjct: 1   MAALLLSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALI 60

Query: 61  HTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM 116
           HTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM
Sbjct: 61  HTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM 116


>gi|4506863 succinate dehydrogenase complex, subunit C isoform 1
           precursor [Homo sapiens]
          Length = 169

 Score =  223 bits (569), Expect = 2e-59
 Identities = 110/112 (98%), Positives = 111/112 (99%)

Query: 5   LLSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAK 64
           + SWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAK
Sbjct: 58  IYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAK 117

Query: 65  FALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM 116
           FALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM
Sbjct: 118 FALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM 169


>gi|78711822 succinate dehydrogenase complex, subunit C isoform 3
           precursor [Homo sapiens]
          Length = 135

 Score =  222 bits (565), Expect = 6e-59
 Identities = 109/110 (99%), Positives = 110/110 (100%)

Query: 7   SWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFA 66
           +WSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFA
Sbjct: 26  NWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFA 85

Query: 67  LVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM 116
           LVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM
Sbjct: 86  LVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM 135


>gi|155369255 hypothetical protein LOC642502 [Homo sapiens]
          Length = 135

 Score =  222 bits (565), Expect = 6e-59
 Identities = 109/110 (99%), Positives = 110/110 (100%)

Query: 7   SWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFA 66
           +WSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFA
Sbjct: 26  NWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFA 85

Query: 67  LVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM 116
           LVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM
Sbjct: 86  LVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM 135


>gi|78711820 succinate dehydrogenase complex, subunit C isoform 2
          precursor [Homo sapiens]
          Length = 150

 Score = 48.9 bits (115), Expect = 9e-07
 Identities = 22/25 (88%), Positives = 23/25 (92%)

Query: 5  LLSWSLPMAMSICHRGTGIALSAGV 29
          + SWSLPMAMSICHRGTGIALSA V
Sbjct: 58 IYSWSLPMAMSICHRGTGIALSADV 82


>gi|239749866 PREDICTED: similar to succinate dehydrogenase
          complex, subunit C [Homo sapiens]
          Length = 150

 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 17/25 (68%), Positives = 19/25 (76%)

Query: 5  LLSWSLPMAMSICHRGTGIALSAGV 29
          + SWSLPMAM+ICH  TG AL A V
Sbjct: 58 IYSWSLPMAMAICHHDTGTALRADV 82


>gi|239744168 PREDICTED: similar to succinate dehydrogenase
          complex, subunit C [Homo sapiens]
          Length = 150

 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 17/25 (68%), Positives = 19/25 (76%)

Query: 5  LLSWSLPMAMSICHRGTGIALSAGV 29
          + SWSLPMAM+ICH  TG AL A V
Sbjct: 58 IYSWSLPMAMAICHHDTGTALRADV 82


>gi|45505180 per1-like domain containing 1 [Homo sapiens]
          Length = 320

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 9/97 (9%)

Query: 17  CHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFALVFPLMYHTW 76
           C R  G+   A VS F    LL+     SYL L++    G  L+      LV        
Sbjct: 184 CVRTVGLQHPAVVSAFRALLLLMLTVHVSYLSLIR-FDYGYNLVANVAIGLV-------- 234

Query: 77  NGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGL 113
           N +  L W L    ++P + +  VVVL+L  LS + L
Sbjct: 235 NVVWWLAWCLWNQRRLPHVRKCVVVVLLLQGLSLLEL 271


>gi|52218852 olfactory receptor, family 10, subfamily K, member 1
           [Homo sapiens]
          Length = 313

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 49  LVKSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVL 108
           L+ + C     +     +LVF L +H+ N + H   D+   LK+   + SG   LV+ +L
Sbjct: 144 LMAAACACGFTVSLVTTSLVFHLPFHSSNQLHHFFCDISPVLKLASQH-SGFSQLVIFML 202

Query: 109 SSMGL 113
               L
Sbjct: 203 GVFAL 207


>gi|37675379 dendritic cell-associated C-type lectin 1 isoform e
           [Homo sapiens]
          Length = 168

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 57  PALIHTAKFALVFPLMYHTWNGIRHLMWDLGKG-LKIPQLYQSGVVV 102
           P  I   K   +F +  ++W+G +   W LG   LKI    + G +V
Sbjct: 43  PNWIIYEKSCYLFSMSLNSWDGSKRQCWQLGSNLLKIDSSNELGFIV 89


>gi|13384604 dendritic cell-associated C-type lectin 1 isoform b
           [Homo sapiens]
          Length = 201

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 57  PALIHTAKFALVFPLMYHTWNGIRHLMWDLGKG-LKIPQLYQSGVVV 102
           P  I   K   +F +  ++W+G +   W LG   LKI    + G +V
Sbjct: 76  PNWIIYEKSCYLFSMSLNSWDGSKRQCWQLGSNLLKIDSSNELGFIV 122


>gi|37675373 dendritic cell-associated C-type lectin 1 isoform a
           [Homo sapiens]
          Length = 247

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 57  PALIHTAKFALVFPLMYHTWNGIRHLMWDLGKG-LKIPQLYQSGVVV 102
           P  I   K   +F +  ++W+G +   W LG   LKI    + G +V
Sbjct: 122 PNWIIYEKSCYLFSMSLNSWDGSKRQCWQLGSNLLKIDSSNELGFIV 168


>gi|126116596 asp (abnormal spindle)-like, microcephaly associated
            [Homo sapiens]
          Length = 3477

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 3/33 (9%)

Query: 84   WDLGKGLKIP---QLYQSGVVVLVLTVLSSMGL 113
            WDL K L+IP   +L +   V +VL VL S G+
Sbjct: 989  WDLSKKLRIPAISRLQKMHNVDIVLQVLKSRGI 1021


>gi|118572606 hemicentin 1 [Homo sapiens]
          Length = 5635

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 5/56 (8%)

Query: 57   PALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMG 112
            PA+I      + FP ++ T NGIR L    G G +I     SG + ++ T L+  G
Sbjct: 3913 PAVITCTASGVPFPSIHWTKNGIRLL--PRGDGYRI---LSSGAIEILATQLNHAG 3963


>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
           sapiens]
          Length = 1560

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 9   SLPMAMSICHRGTGIALSAGVSLFGMSALLLPG 41
           S PM++ + ++G+ I + A   L G +  LLPG
Sbjct: 444 SKPMSVHLLNQGSSIVIPAQHMLPGQNQFLLPG 476


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.327    0.139    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,201,971
Number of Sequences: 37866
Number of extensions: 161043
Number of successful extensions: 307
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 298
Number of HSP's gapped (non-prelim): 15
length of query: 116
length of database: 18,247,518
effective HSP length: 86
effective length of query: 30
effective length of database: 14,991,042
effective search space: 449731260
effective search space used: 449731260
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.