Search of human proteins with 77873934

Search of human proteins with 77873934

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|77873934 RAD52 motif 1 isoform 2 [Homo sapiens]
         (236 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|77873934 RAD52 motif 1 isoform 2 [Homo sapiens]                    466   e-132
gi|21717826 RAD52 motif 1 isoform 1 [Homo sapiens]                    441   e-124
gi|253314445 RAD52 motif 1 isoform 4 [Homo sapiens]                   382   e-106
gi|253314472 RAD52 motif 1 isoform 8 [Homo sapiens]                   379   e-105
gi|253314447 RAD52 motif 1 isoform 5 [Homo sapiens]                   319   1e-87
gi|253314443 RAD52 motif 1 isoform 3 [Homo sapiens]                   270   8e-73
gi|253314451 RAD52 motif 1 isoform 6 [Homo sapiens]                   207   5e-54
gi|253314453 RAD52 motif 1 isoform 7 [Homo sapiens]                   207   6e-54
gi|239745785 PREDICTED: similar to hCG2007264 [Homo sapiens]          135   3e-32
gi|239756812 PREDICTED: similar to RAD52 motif 1 [Homo sapiens]        60   2e-09
gi|54607124 RNA binding motif protein 15B [Homo sapiens]               32   0.36 
gi|188528675 slit homolog 1 [Homo sapiens]                             32   0.48 
gi|223005862 echinoderm microtubule associated protein like 6 [H...    28   9.0  
gi|38176300 nestin [Homo sapiens]                                      28   9.0  

>gi|77873934 RAD52 motif 1 isoform 2 [Homo sapiens]
          Length = 236

 Score =  466 bits (1199), Expect = e-132
 Identities = 236/236 (100%), Positives = 236/236 (100%)

Query: 1   MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG 60
           MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
Sbjct: 1   MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG 60

Query: 61  FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY 120
           FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
Sbjct: 61  FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY 120

Query: 121 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV 180
           YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV
Sbjct: 121 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV 180

Query: 181 EEPMDKVEEGPLSFLMKRKTAQKLAIQKALSDAFQKLLIVVLGKTVLIILEVLQFQ 236
           EEPMDKVEEGPLSFLMKRKTAQKLAIQKALSDAFQKLLIVVLGKTVLIILEVLQFQ
Sbjct: 181 EEPMDKVEEGPLSFLMKRKTAQKLAIQKALSDAFQKLLIVVLGKTVLIILEVLQFQ 236


>gi|21717826 RAD52 motif 1 isoform 1 [Homo sapiens]
          Length = 284

 Score =  441 bits (1134), Expect = e-124
 Identities = 222/222 (100%), Positives = 222/222 (100%)

Query: 1   MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG 60
           MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
Sbjct: 1   MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG 60

Query: 61  FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY 120
           FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
Sbjct: 61  FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY 120

Query: 121 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV 180
           YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV
Sbjct: 121 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV 180

Query: 181 EEPMDKVEEGPLSFLMKRKTAQKLAIQKALSDAFQKLLIVVL 222
           EEPMDKVEEGPLSFLMKRKTAQKLAIQKALSDAFQKLLIVVL
Sbjct: 181 EEPMDKVEEGPLSFLMKRKTAQKLAIQKALSDAFQKLLIVVL 222


>gi|253314445 RAD52 motif 1 isoform 4 [Homo sapiens]
          Length = 251

 Score =  382 bits (980), Expect = e-106
 Identities = 189/189 (100%), Positives = 189/189 (100%)

Query: 1   MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG 60
           MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
Sbjct: 1   MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG 60

Query: 61  FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY 120
           FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
Sbjct: 61  FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY 120

Query: 121 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV 180
           YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV
Sbjct: 121 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV 180

Query: 181 EEPMDKVEE 189
           EEPMDKVEE
Sbjct: 181 EEPMDKVEE 189


>gi|253314472 RAD52 motif 1 isoform 8 [Homo sapiens]
          Length = 261

 Score =  379 bits (972), Expect = e-105
 Identities = 190/190 (100%), Positives = 190/190 (100%)

Query: 33  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 92
           HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK
Sbjct: 10  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 69

Query: 93  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVPL 152
           VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVPL
Sbjct: 70  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVPL 129

Query: 153 PKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEEGPLSFLMKRKTAQKLAIQKALSD 212
           PKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEEGPLSFLMKRKTAQKLAIQKALSD
Sbjct: 130 PKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEEGPLSFLMKRKTAQKLAIQKALSD 189

Query: 213 AFQKLLIVVL 222
           AFQKLLIVVL
Sbjct: 190 AFQKLLIVVL 199


>gi|253314447 RAD52 motif 1 isoform 5 [Homo sapiens]
          Length = 228

 Score =  319 bits (818), Expect = 1e-87
 Identities = 157/157 (100%), Positives = 157/157 (100%)

Query: 33  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 92
           HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK
Sbjct: 10  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 69

Query: 93  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVPL 152
           VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVPL
Sbjct: 70  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVPL 129

Query: 153 PKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEE 189
           PKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEE
Sbjct: 130 PKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEE 166


>gi|253314443 RAD52 motif 1 isoform 3 [Homo sapiens]
          Length = 166

 Score =  270 bits (690), Expect = 8e-73
 Identities = 133/134 (99%), Positives = 134/134 (100%)

Query: 1   MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG 60
           MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
Sbjct: 1   MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG 60

Query: 61  FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY 120
           FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
Sbjct: 61  FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY 120

Query: 121 YFGFNGCSKRIIKL 134
           YFGFNGCSKRIIK+
Sbjct: 121 YFGFNGCSKRIIKV 134


>gi|253314451 RAD52 motif 1 isoform 6 [Homo sapiens]
          Length = 143

 Score =  207 bits (528), Expect = 5e-54
 Identities = 101/102 (99%), Positives = 102/102 (100%)

Query: 33  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 92
           HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK
Sbjct: 10  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 69

Query: 93  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKL 134
           VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK+
Sbjct: 70  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKV 111


>gi|253314453 RAD52 motif 1 isoform 7 [Homo sapiens]
          Length = 116

 Score =  207 bits (527), Expect = 6e-54
 Identities = 101/101 (100%), Positives = 101/101 (100%)

Query: 33  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 92
           HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK
Sbjct: 10  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 69

Query: 93  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK 133
           VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK
Sbjct: 70  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK 110


>gi|239745785 PREDICTED: similar to hCG2007264 [Homo sapiens]
          Length = 175

 Score =  135 bits (340), Expect = 3e-32
 Identities = 69/81 (85%), Positives = 70/81 (86%)

Query: 13  SDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARA 72
           SDKTLLVWELSSGPTA+ALH SL  AFSQF LLYSVRVFPNAAVAH GFY VIKFYSA A
Sbjct: 84  SDKTLLVWELSSGPTADALHVSLGQAFSQFDLLYSVRVFPNAAVAHSGFYGVIKFYSAMA 143

Query: 73  AHRAQKACDRKQLFQKSPVKV 93
            H AQKAC RKQLFQ SPVKV
Sbjct: 144 VHGAQKACHRKQLFQTSPVKV 164


>gi|239756812 PREDICTED: similar to RAD52 motif 1 [Homo sapiens]
          Length = 236

 Score = 60.1 bits (144), Expect = 2e-09
 Identities = 27/32 (84%), Positives = 31/32 (96%)

Query: 1  MAELVPFAVPIESDKTLLVWELSSGPTAEALH 32
          MA+L+PFAVP +SDKTLLVWELSSGPTA+ALH
Sbjct: 1  MADLLPFAVPTKSDKTLLVWELSSGPTADALH 32


>gi|54607124 RNA binding motif protein 15B [Homo sapiens]
          Length = 890

 Score = 32.3 bits (72), Expect = 0.36
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 38  AFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLG 96
           AF ++G++  V V    A    G YA +KF +   AHRA+ A   + +  ++P+K+  G
Sbjct: 356 AFEKYGIIEEV-VIKRPARGQGGAYAFLKFQNLDMAHRAKVAMSGR-VIGRNPIKIGYG 412



 Score = 30.4 bits (67), Expect = 1.4
 Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 5/80 (6%)

Query: 15  KTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAH 74
           KTLL+  LS    AE L   LF  F +FG + S+R+   +     G  A + F   + A 
Sbjct: 139 KTLLISSLSPALPAEHLEDRLFHQFKRFGEI-SLRL---SHTPELGRVAYVNFRHPQDAR 194

Query: 75  RA-QKACDRKQLFQKSPVKV 93
            A Q A  R+ L    P+KV
Sbjct: 195 EARQHALARQLLLYDRPLKV 214


>gi|188528675 slit homolog 1 [Homo sapiens]
          Length = 1534

 Score = 32.0 bits (71), Expect = 0.48
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 7/70 (10%)

Query: 123  GFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPS------CDCRSPG 176
            GF+GC + +    EL D  + + +  +VP  +   K +C   +  P+      C C +  
Sbjct: 1309 GFHGCIRNLYINNELQDFTKTQMKPGVVPGCEPCRKLYCLHGICQPNATPGPMCHCEAGW 1368

Query: 177  IGL-VEEPMD 185
            +GL  ++P D
Sbjct: 1369 VGLHCDQPAD 1378


>gi|223005862 echinoderm microtubule associated protein like 6 [Homo
            sapiens]
          Length = 1958

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 4    LVPFAVPIESDKTLLVWELSS 24
            L+P    +  DKTL +WELS+
Sbjct: 1009 LLPICATVSDDKTLRIWELSA 1029


>gi|38176300 nestin [Homo sapiens]
          Length = 1621

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 12/26 (46%), Positives = 18/26 (69%)

Query: 133 KLQELSDLEERENEDSMVPLPKQSLK 158
           ++ E  DL  +E +DS VPL K++LK
Sbjct: 522 EIWEEEDLNRKEIQDSQVPLEKETLK 547


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.135    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,379,065
Number of Sequences: 37866
Number of extensions: 340829
Number of successful extensions: 806
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 793
Number of HSP's gapped (non-prelim): 15
length of query: 236
length of database: 18,247,518
effective HSP length: 99
effective length of query: 137
effective length of database: 14,498,784
effective search space: 1986333408
effective search space used: 1986333408
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.