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Search of human proteins with 7706543
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7706543 HIG1 hypoxia inducible domain family, member 1B
[Homo sapiens]
(99 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7706543 HIG1 hypoxia inducible domain family, member 1B [Homo... 203 3e-53
gi|157817101 HIG1 domain family, member 1C [Homo sapiens] 90 3e-19
gi|153085470 HIG1 domain family, member 1A isoform b [Homo sapiens] 89 7e-19
gi|153085461 HIG1 domain family, member 1A isoform a [Homo sapiens] 89 7e-19
gi|153085463 HIG1 domain family, member 1A isoform b [Homo sapiens] 89 7e-19
gi|239755597 PREDICTED: similar to HIG1 domain family, member 1A... 85 1e-17
gi|239750094 PREDICTED: similar to HIG1 domain family, member 1A... 85 1e-17
gi|239744403 PREDICTED: hypothetical protein XP_002343136 [Homo ... 85 1e-17
gi|20270389 HIG1 hypoxia inducible domain family, member 2A [Hom... 55 1e-08
gi|148727255 microtubule associated serine/threonine kinase fami... 28 1.6
gi|10257429 immunity-related GTPase family, cinema [Homo sapiens] 28 2.0
gi|119943143 olfactory receptor, family 1, subfamily D, member 4... 27 2.7
gi|13027802 matrix metalloproteinase 16 isoform 1 preproprotein ... 27 3.5
gi|7657423 olfactory receptor, family 1, subfamily D, member 5 [... 26 7.8
>gi|7706543 HIG1 hypoxia inducible domain family, member 1B [Homo
sapiens]
Length = 99
Score = 203 bits (516), Expect = 3e-53
Identities = 99/99 (100%), Positives = 99/99 (100%)
Query: 1 MSANRRWWVPPDDEDCVSEKLLRKTRESPLVPIGLGGCLVVAAYRIYRLRSRGSTKMSIH 60
MSANRRWWVPPDDEDCVSEKLLRKTRESPLVPIGLGGCLVVAAYRIYRLRSRGSTKMSIH
Sbjct: 1 MSANRRWWVPPDDEDCVSEKLLRKTRESPLVPIGLGGCLVVAAYRIYRLRSRGSTKMSIH 60
Query: 61 LIHTRVAAQACAVGAIMLGAVYTMYSDYVKRMAQDAGEK 99
LIHTRVAAQACAVGAIMLGAVYTMYSDYVKRMAQDAGEK
Sbjct: 61 LIHTRVAAQACAVGAIMLGAVYTMYSDYVKRMAQDAGEK 99
>gi|157817101 HIG1 domain family, member 1C [Homo sapiens]
Length = 97
Score = 90.1 bits (222), Expect = 3e-19
Identities = 42/90 (46%), Positives = 63/90 (70%), Gaps = 2/90 (2%)
Query: 1 MSANRRWWVPPDDEDCVSEKLLRKTRESPLVPIGLGGCLVVAAYRIYRLRSRGSTKMSIH 60
MS++ +W D+++ +L+RK+R+SP VPIG+ G + V + +Y+L+ R KMSIH
Sbjct: 1 MSSDNQW--SADEDEGQLSRLIRKSRDSPFVPIGIAGFVTVVSCGLYKLKYRRDQKMSIH 58
Query: 61 LIHTRVAAQACAVGAIMLGAVYTMYSDYVK 90
LIH RVAAQ VGA+ LG +Y+MY DY++
Sbjct: 59 LIHMRVAAQGFVVGAVTLGVLYSMYKDYIR 88
>gi|153085470 HIG1 domain family, member 1A isoform b [Homo
sapiens]
Length = 93
Score = 89.0 bits (219), Expect = 7e-19
Identities = 40/78 (51%), Positives = 56/78 (71%)
Query: 11 PDDEDCVSEKLLRKTRESPLVPIGLGGCLVVAAYRIYRLRSRGSTKMSIHLIHTRVAAQA 70
P E+ KL+RK +E+P VP+G+ G + AY +Y+L+SRG+TKMSIHLIH RVAAQ
Sbjct: 10 PSYEEDQGSKLIRKAKEAPFVPVGIAGFAAIVAYGLYKLKSRGNTKMSIHLIHMRVAAQG 69
Query: 71 CAVGAIMLGAVYTMYSDY 88
VGA+ +G Y+MY ++
Sbjct: 70 FVVGAMTVGMGYSMYREF 87
>gi|153085461 HIG1 domain family, member 1A isoform a [Homo sapiens]
Length = 107
Score = 89.0 bits (219), Expect = 7e-19
Identities = 40/78 (51%), Positives = 56/78 (71%)
Query: 11 PDDEDCVSEKLLRKTRESPLVPIGLGGCLVVAAYRIYRLRSRGSTKMSIHLIHTRVAAQA 70
P E+ KL+RK +E+P VP+G+ G + AY +Y+L+SRG+TKMSIHLIH RVAAQ
Sbjct: 24 PSYEEDQGSKLIRKAKEAPFVPVGIAGFAAIVAYGLYKLKSRGNTKMSIHLIHMRVAAQG 83
Query: 71 CAVGAIMLGAVYTMYSDY 88
VGA+ +G Y+MY ++
Sbjct: 84 FVVGAMTVGMGYSMYREF 101
>gi|153085463 HIG1 domain family, member 1A isoform b [Homo
sapiens]
Length = 93
Score = 89.0 bits (219), Expect = 7e-19
Identities = 40/78 (51%), Positives = 56/78 (71%)
Query: 11 PDDEDCVSEKLLRKTRESPLVPIGLGGCLVVAAYRIYRLRSRGSTKMSIHLIHTRVAAQA 70
P E+ KL+RK +E+P VP+G+ G + AY +Y+L+SRG+TKMSIHLIH RVAAQ
Sbjct: 10 PSYEEDQGSKLIRKAKEAPFVPVGIAGFAAIVAYGLYKLKSRGNTKMSIHLIHMRVAAQG 69
Query: 71 CAVGAIMLGAVYTMYSDY 88
VGA+ +G Y+MY ++
Sbjct: 70 FVVGAMTVGMGYSMYREF 87
>gi|239755597 PREDICTED: similar to HIG1 domain family, member 1A
[Homo sapiens]
Length = 124
Score = 84.7 bits (208), Expect = 1e-17
Identities = 36/75 (48%), Positives = 55/75 (73%)
Query: 14 EDCVSEKLLRKTRESPLVPIGLGGCLVVAAYRIYRLRSRGSTKMSIHLIHTRVAAQACAV 73
++ KL+RK +E+PLVP+G+ G + Y +Y+L+SRG+T+MS+HLIH RVAAQ V
Sbjct: 44 DEAQGSKLIRKAKETPLVPVGIAGFAALVTYGLYKLKSRGNTQMSLHLIHMRVAAQGFVV 103
Query: 74 GAIMLGAVYTMYSDY 88
GA+ +G Y+MY ++
Sbjct: 104 GAMTIGMGYSMYREF 118
>gi|239750094 PREDICTED: similar to HIG1 domain family, member 1A
[Homo sapiens]
Length = 124
Score = 84.7 bits (208), Expect = 1e-17
Identities = 36/75 (48%), Positives = 55/75 (73%)
Query: 14 EDCVSEKLLRKTRESPLVPIGLGGCLVVAAYRIYRLRSRGSTKMSIHLIHTRVAAQACAV 73
++ KL+RK +E+PLVP+G+ G + Y +Y+L+SRG+T+MS+HLIH RVAAQ V
Sbjct: 44 DEAQGSKLIRKAKETPLVPVGIAGFAALVTYGLYKLKSRGNTQMSLHLIHMRVAAQGFVV 103
Query: 74 GAIMLGAVYTMYSDY 88
GA+ +G Y+MY ++
Sbjct: 104 GAMTIGMGYSMYREF 118
>gi|239744403 PREDICTED: hypothetical protein XP_002343136 [Homo
sapiens]
Length = 124
Score = 84.7 bits (208), Expect = 1e-17
Identities = 36/75 (48%), Positives = 55/75 (73%)
Query: 14 EDCVSEKLLRKTRESPLVPIGLGGCLVVAAYRIYRLRSRGSTKMSIHLIHTRVAAQACAV 73
++ KL+RK +E+PLVP+G+ G + Y +Y+L+SRG+T+MS+HLIH RVAAQ V
Sbjct: 44 DEAQGSKLIRKAKETPLVPVGIAGFAALVTYGLYKLKSRGNTQMSLHLIHMRVAAQGFVV 103
Query: 74 GAIMLGAVYTMYSDY 88
GA+ +G Y+MY ++
Sbjct: 104 GAMTIGMGYSMYREF 118
>gi|20270389 HIG1 hypoxia inducible domain family, member 2A [Homo
sapiens]
Length = 106
Score = 55.1 bits (131), Expect = 1e-08
Identities = 33/67 (49%), Positives = 43/67 (64%), Gaps = 5/67 (7%)
Query: 19 EKLLRKTRESPLVPIGLGGCLVVAAYRIYRLRS--RGSTKMSIHLIHTRVAAQACAVGAI 76
EK +RKTRE+P+VPI GCL AA Y L S RG+++ S ++ TR+AAQ V AI
Sbjct: 37 EKFVRKTRENPVVPI---GCLATAAALTYGLYSFHRGNSQRSQLMMRTRIAAQGFTVAAI 93
Query: 77 MLGAVYT 83
+LG T
Sbjct: 94 LLGLAVT 100
>gi|148727255 microtubule associated serine/threonine kinase family
member 4 isoform a [Homo sapiens]
Length = 2434
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 10 PPDDEDCVSEKLLRKTRESPLVPIGLGGCLVVAAYRIYR 48
PPD +D ++ L R++PL +G GG V +R +R
Sbjct: 621 PPDAQDLITLLL----RQNPLERLGTGGAYEVKQHRFFR 655
>gi|10257429 immunity-related GTPase family, cinema [Homo sapiens]
Length = 463
Score = 27.7 bits (60), Expect = 2.0
Identities = 16/52 (30%), Positives = 23/52 (44%)
Query: 45 RIYRLRSRGSTKMSIHLIHTRVAAQACAVGAIMLGAVYTMYSDYVKRMAQDA 96
R+Y S G+ +++ G I GAVYTM + MA+DA
Sbjct: 345 RLYSQSSDGAMRVARAFERGIPVFGTLVAGGISFGAVYTMLQGCLNEMAEDA 396
>gi|119943143 olfactory receptor, family 1, subfamily D, member 4
[Homo sapiens]
Length = 330
Score = 27.3 bits (59), Expect = 2.7
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 60 HLIHTRVAAQACAVGAIMLGAVYTMYSDYVKRMAQ 94
H+IHT + A C + +LG + T Y V+ + Q
Sbjct: 211 HIIHTALIATGCFIFLTLLGFMTTSYVRIVRTILQ 245
>gi|13027802 matrix metalloproteinase 16 isoform 1 preproprotein
[Homo sapiens]
Length = 607
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 10/65 (15%)
Query: 10 PPDDEDCVSEKLLRKTRESP-----LVPIGLGGCLVVAAYRIYRLRSRGSTKMSIHLIHT 64
PPDD D V + L T + ++P L CL+V Y +++ + +G+ + H+++
Sbjct: 545 PPDDVDIVIK--LDNTASTVKAIAIVIPCILALCLLVLVYTVFQFKRKGTPR---HILYC 599
Query: 65 RVAAQ 69
+ + Q
Sbjct: 600 KRSMQ 604
>gi|7657423 olfactory receptor, family 1, subfamily D, member 5
[Homo sapiens]
Length = 312
Score = 25.8 bits (55), Expect = 7.8
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 60 HLIHTRVAAQACAVGAIMLGAVYTMYSDYVKRMAQ 94
H+IHT + A C + LG + T Y V+ + Q
Sbjct: 193 HIIHTALIATGCFIFLTPLGFMTTSYVRIVRTILQ 227
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.134 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,613,400
Number of Sequences: 37866
Number of extensions: 123239
Number of successful extensions: 358
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 345
Number of HSP's gapped (non-prelim): 14
length of query: 99
length of database: 18,247,518
effective HSP length: 70
effective length of query: 29
effective length of database: 15,596,898
effective search space: 452310042
effective search space used: 452310042
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.