Search of human proteins with 7706200

Search of human proteins with 7706200

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|7706200 mesenchymal stem cell protein DSCD75 [Homo sapiens]
         (208 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|7706200 mesenchymal stem cell protein DSCD75 [Homo sapiens]        414   e-116
gi|153792095 N-acetylgalactosaminyltransferase 11 [Homo sapiens]       29   2.5  
gi|109148508 otubain 1 [Homo sapiens]                                  29   2.5  
gi|156938336 class II transactivator [Homo sapiens]                    29   3.2  
gi|195976805 hypoxia up-regulated 1 precursor [Homo sapiens]           28   4.2  
gi|5453832 hypoxia up-regulated 1 precursor [Homo sapiens]             28   4.2  
gi|209870084 protein-O-mannosyltransferase 1 isoform d [Homo sap...    28   7.2  
gi|209870082 protein-O-mannosyltransferase 1 isoform b [Homo sap...    28   7.2  
gi|116517315 protein-O-mannosyltransferase 1 isoform c [Homo sap...    28   7.2  
gi|116517317 protein-O-mannosyltransferase 1 isoform b [Homo sap...    28   7.2  
gi|116517319 protein-O-mannosyltransferase 1 isoform a [Homo sap...    28   7.2  
gi|46358428 selective LIM binding factor homolog [Homo sapiens]        27   9.4  

>gi|7706200 mesenchymal stem cell protein DSCD75 [Homo sapiens]
          Length = 208

 Score =  414 bits (1063), Expect = e-116
 Identities = 208/208 (100%), Positives = 208/208 (100%)

Query: 1   MLGLLVALLALGLAVFALLDVWYLVRLPCAVLRARLLQPRVRDLLAEQRFPGRVLPSDLD 60
           MLGLLVALLALGLAVFALLDVWYLVRLPCAVLRARLLQPRVRDLLAEQRFPGRVLPSDLD
Sbjct: 1   MLGLLVALLALGLAVFALLDVWYLVRLPCAVLRARLLQPRVRDLLAEQRFPGRVLPSDLD 60

Query: 61  LLLHMNNARYLREADFARVAHLTRCGVLGALRELRAHTVLAASCARHRRSLRLLEPFEVR 120
           LLLHMNNARYLREADFARVAHLTRCGVLGALRELRAHTVLAASCARHRRSLRLLEPFEVR
Sbjct: 61  LLLHMNNARYLREADFARVAHLTRCGVLGALRELRAHTVLAASCARHRRSLRLLEPFEVR 120

Query: 121 TRLLGWDDRAFYLEARFVSLRDGFVCALLRFRQHLLGTSPERVVQHLCQRRVEPPELPAD 180
           TRLLGWDDRAFYLEARFVSLRDGFVCALLRFRQHLLGTSPERVVQHLCQRRVEPPELPAD
Sbjct: 121 TRLLGWDDRAFYLEARFVSLRDGFVCALLRFRQHLLGTSPERVVQHLCQRRVEPPELPAD 180

Query: 181 LQHWISYNEASSQLLRMESGLSDVTKDQ 208
           LQHWISYNEASSQLLRMESGLSDVTKDQ
Sbjct: 181 LQHWISYNEASSQLLRMESGLSDVTKDQ 208


>gi|153792095 N-acetylgalactosaminyltransferase 11 [Homo sapiens]
          Length = 608

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 16/38 (42%), Positives = 20/38 (52%)

Query: 168 CQRRVEPPELPADLQHWISYNEASSQLLRMESGLSDVT 205
           C+ +  PP+LPA       YNEA S LLR    + D T
Sbjct: 141 CKEKFYPPDLPAASVVICFYNEAFSALLRTVHSVIDRT 178


>gi|109148508 otubain 1 [Homo sapiens]
          Length = 271

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 8/98 (8%)

Query: 107 HRRSLRLLEPFEVRTR----LLGWDDRAF--YLEARFVSLRDGFVCALLRFRQHLLGTSP 160
           H   + L+E  E +T     L  ++D++   YL      L  G++    +F +H +    
Sbjct: 139 HNTFMDLIEQVEKQTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGG- 197

Query: 161 ERVVQHLCQRRVEPPELPADLQHWISYNEASSQLLRME 198
            R V+  CQ+ VEP    +D  H I+  +A S  +++E
Sbjct: 198 -RTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVE 234


>gi|156938336 class II transactivator [Homo sapiens]
          Length = 1130

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 11/16 (68%), Positives = 13/16 (81%)

Query: 169 QRRVEPPELPADLQHW 184
           Q+R  P ELPADL+HW
Sbjct: 143 QKRPFPEELPADLKHW 158


>gi|195976805 hypoxia up-regulated 1 precursor [Homo sapiens]
          Length = 999

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 19/48 (39%), Positives = 23/48 (47%)

Query: 147 ALLRFRQHLLGTSPERVVQHLCQRRVEPPELPADLQHWISYNEASSQL 194
           A LR+ QHLLG   +     L Q R    EL  D Q    + + SSQL
Sbjct: 95  ATLRYFQHLLGKQADNPHVALYQARFPEHELTFDPQRQTVHFQISSQL 142


>gi|5453832 hypoxia up-regulated 1 precursor [Homo sapiens]
          Length = 999

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 19/48 (39%), Positives = 23/48 (47%)

Query: 147 ALLRFRQHLLGTSPERVVQHLCQRRVEPPELPADLQHWISYNEASSQL 194
           A LR+ QHLLG   +     L Q R    EL  D Q    + + SSQL
Sbjct: 95  ATLRYFQHLLGKQADNPHVALYQARFPEHELTFDPQRQTVHFQISSQL 142


>gi|209870084 protein-O-mannosyltransferase 1 isoform d [Homo
           sapiens]
          Length = 608

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 10/17 (58%), Positives = 15/17 (88%)

Query: 10  ALGLAVFALLDVWYLVR 26
           +L LA++ALL +WYL+R
Sbjct: 465 SLALAIYALLSLWYLLR 481


>gi|209870082 protein-O-mannosyltransferase 1 isoform b [Homo
           sapiens]
          Length = 725

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 10/17 (58%), Positives = 15/17 (88%)

Query: 10  ALGLAVFALLDVWYLVR 26
           +L LA++ALL +WYL+R
Sbjct: 582 SLALAIYALLSLWYLLR 598


>gi|116517315 protein-O-mannosyltransferase 1 isoform c [Homo
           sapiens]
          Length = 671

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 10/17 (58%), Positives = 15/17 (88%)

Query: 10  ALGLAVFALLDVWYLVR 26
           +L LA++ALL +WYL+R
Sbjct: 528 SLALAIYALLSLWYLLR 544


>gi|116517317 protein-O-mannosyltransferase 1 isoform b [Homo
           sapiens]
          Length = 725

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 10/17 (58%), Positives = 15/17 (88%)

Query: 10  ALGLAVFALLDVWYLVR 26
           +L LA++ALL +WYL+R
Sbjct: 582 SLALAIYALLSLWYLLR 598


>gi|116517319 protein-O-mannosyltransferase 1 isoform a [Homo
           sapiens]
          Length = 747

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 10/17 (58%), Positives = 15/17 (88%)

Query: 10  ALGLAVFALLDVWYLVR 26
           +L LA++ALL +WYL+R
Sbjct: 604 SLALAIYALLSLWYLLR 620


>gi|46358428 selective LIM binding factor homolog [Homo sapiens]
          Length = 1749

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 100  LAASCARHRRSLRLLEPFE---VRTRLLGWDDRAFYLEARFVSLRD 142
            L+ S  RH + L + + F    +  + +GWD+ AF    RF+ L D
Sbjct: 1560 LSVSLLRHTQLLPVDKAFYEAGIAAKAVGWDNMAFIFLNRFLDLTD 1605


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.330    0.142    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,666,397
Number of Sequences: 37866
Number of extensions: 322628
Number of successful extensions: 936
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 927
Number of HSP's gapped (non-prelim): 12
length of query: 208
length of database: 18,247,518
effective HSP length: 98
effective length of query: 110
effective length of database: 14,536,650
effective search space: 1599031500
effective search space used: 1599031500
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.