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Search of human proteins with 7705429
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7705429 proteasome maturation protein [Homo sapiens]
(141 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7705429 proteasome maturation protein [Homo sapiens] 280 4e-76
gi|15529980 leucine rich repeat containing 46 [Homo sapiens] 33 0.10
gi|17136148 ATPase, H+ transporting, lysosomal accessory protein... 31 0.30
gi|116235485 delta-notch-like EGF repeat-containing transmembran... 29 1.5
gi|55953112 ret finger protein 2 isoform 2 [Homo sapiens] 28 1.9
gi|47132524 ret finger protein 2 isoform 1 [Homo sapiens] 28 1.9
gi|16445412 ret finger protein 2 isoform 1 [Homo sapiens] 28 1.9
gi|47132521 ret finger protein 2 isoform 1 [Homo sapiens] 28 1.9
gi|208022687 GTPase regulator associated with the focal adhesion... 27 5.6
gi|7662208 GTPase regulator associated with the focal adhesion k... 27 5.6
gi|50843948 Rho GTPase activating protein 10 [Homo sapiens] 26 9.5
>gi|7705429 proteasome maturation protein [Homo sapiens]
Length = 141
Score = 280 bits (715), Expect = 4e-76
Identities = 141/141 (100%), Positives = 141/141 (100%)
Query: 1 MNARGLGSELKDSIPVTELSASGPFESHDLLRKGFSCVKNELLPSHPLELSEKNFQLNQD 60
MNARGLGSELKDSIPVTELSASGPFESHDLLRKGFSCVKNELLPSHPLELSEKNFQLNQD
Sbjct: 1 MNARGLGSELKDSIPVTELSASGPFESHDLLRKGFSCVKNELLPSHPLELSEKNFQLNQD 60
Query: 61 KMNFSTLRNIQGLFAPLKLQMEFKAVQQVQRLPFLSSSNLSLDVLRGNDETIGFEDILND 120
KMNFSTLRNIQGLFAPLKLQMEFKAVQQVQRLPFLSSSNLSLDVLRGNDETIGFEDILND
Sbjct: 61 KMNFSTLRNIQGLFAPLKLQMEFKAVQQVQRLPFLSSSNLSLDVLRGNDETIGFEDILND 120
Query: 121 PSQSEVMGEPHLMVEYKLGLL 141
PSQSEVMGEPHLMVEYKLGLL
Sbjct: 121 PSQSEVMGEPHLMVEYKLGLL 141
>gi|15529980 leucine rich repeat containing 46 [Homo sapiens]
Length = 321
Score = 32.7 bits (73), Expect = 0.10
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 20 SASGPFESHDLLRKGFSCVKNELLPSHPLELSEKNFQ-------LNQDKMNFSTLRNIQG 72
SA GP E + + +N P ELSEK F + D+ +T+RN++G
Sbjct: 6 SAQGPEEGGVCITEALITKRNLTFPEDG-ELSEKMFHTLDELQTVRLDREGITTIRNLEG 64
Query: 73 LFAPLKLQMEFKAVQQVQRLPFLSS 97
L L ++ +QQ++ L + S
Sbjct: 65 LQNLHSLYLQGNKIQQIENLACIPS 89
>gi|17136148 ATPase, H+ transporting, lysosomal accessory protein 1
precursor [Homo sapiens]
Length = 470
Score = 31.2 bits (69), Expect = 0.30
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 59 QDKMNFSTLRNIQGLFAPLKLQMEFKAVQQVQRLPFLSSSNLSL--DVLRGNDETIG 113
Q+K+ S L LKL A+ + RLP+ +SS L +VL GNDE IG
Sbjct: 149 QEKLGASPLHVDLATLRELKLNASLPALLLI-RLPYTASSGLMAPREVLTGNDEVIG 204
>gi|116235485 delta-notch-like EGF repeat-containing transmembrane
[Homo sapiens]
Length = 737
Score = 28.9 bits (63), Expect = 1.5
Identities = 15/49 (30%), Positives = 20/49 (40%)
Query: 7 GSELKDSIPVTELSASGPFESHDLLRKGFSCVKNELLPSHPLELSEKNF 55
GS L + +P LSA GP + G + E P HP E +
Sbjct: 30 GSSLANPVPAAPLSAPGPCAAQPCRNGGVCTSRPEPDPQHPAPAGEPGY 78
>gi|55953112 ret finger protein 2 isoform 2 [Homo sapiens]
Length = 410
Score = 28.5 bits (62), Expect = 1.9
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 35 FSCVKNELLPSHPLELSEKNFQLNQDKMNFSTLRNIQGLFAP---LKLQMEFKAVQQVQR 91
F +K ++ ++ E+++ N L + +M F+ + + P L+ EF+ +V +
Sbjct: 207 FETMKLAVMQAYDPEINKLNTILQEQRMAFNIAEAFKDVSEPIVFLQQMQEFREKIKVIK 266
Query: 92 LPFLSSSNLSLDVLRGNDETIGFEDI 117
L SNL L N +T +EDI
Sbjct: 267 ETPLPPSNLPASPLMKNFDTSQWEDI 292
>gi|47132524 ret finger protein 2 isoform 1 [Homo sapiens]
Length = 407
Score = 28.5 bits (62), Expect = 1.9
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 35 FSCVKNELLPSHPLELSEKNFQLNQDKMNFSTLRNIQGLFAP---LKLQMEFKAVQQVQR 91
F +K ++ ++ E+++ N L + +M F+ + + P L+ EF+ +V +
Sbjct: 204 FETMKLAVMQAYDPEINKLNTILQEQRMAFNIAEAFKDVSEPIVFLQQMQEFREKIKVIK 263
Query: 92 LPFLSSSNLSLDVLRGNDETIGFEDI 117
L SNL L N +T +EDI
Sbjct: 264 ETPLPPSNLPASPLMKNFDTSQWEDI 289
>gi|16445412 ret finger protein 2 isoform 1 [Homo sapiens]
Length = 407
Score = 28.5 bits (62), Expect = 1.9
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 35 FSCVKNELLPSHPLELSEKNFQLNQDKMNFSTLRNIQGLFAP---LKLQMEFKAVQQVQR 91
F +K ++ ++ E+++ N L + +M F+ + + P L+ EF+ +V +
Sbjct: 204 FETMKLAVMQAYDPEINKLNTILQEQRMAFNIAEAFKDVSEPIVFLQQMQEFREKIKVIK 263
Query: 92 LPFLSSSNLSLDVLRGNDETIGFEDI 117
L SNL L N +T +EDI
Sbjct: 264 ETPLPPSNLPASPLMKNFDTSQWEDI 289
>gi|47132521 ret finger protein 2 isoform 1 [Homo sapiens]
Length = 407
Score = 28.5 bits (62), Expect = 1.9
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 35 FSCVKNELLPSHPLELSEKNFQLNQDKMNFSTLRNIQGLFAP---LKLQMEFKAVQQVQR 91
F +K ++ ++ E+++ N L + +M F+ + + P L+ EF+ +V +
Sbjct: 204 FETMKLAVMQAYDPEINKLNTILQEQRMAFNIAEAFKDVSEPIVFLQQMQEFREKIKVIK 263
Query: 92 LPFLSSSNLSLDVLRGNDETIGFEDI 117
L SNL L N +T +EDI
Sbjct: 264 ETPLPPSNLPASPLMKNFDTSQWEDI 289
>gi|208022687 GTPase regulator associated with the focal adhesion
kinase pp125 isoform b [Homo sapiens]
Length = 759
Score = 26.9 bits (58), Expect = 5.6
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 58 NQDKMNFSTLRNIQGLFAPLKLQMEFKAVQQVQRLPFLSSSNLSLDVLRGNDETI 112
N K N T+ N+ +F P L+ + + V + + F N+ +++L N E I
Sbjct: 516 NNHKQNLMTVANLGVVFGPTLLRPQEETVAAIMDIKF---QNIVIEILIENHEKI 567
>gi|7662208 GTPase regulator associated with the focal adhesion
kinase pp125 isoform a [Homo sapiens]
Length = 814
Score = 26.9 bits (58), Expect = 5.6
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 58 NQDKMNFSTLRNIQGLFAPLKLQMEFKAVQQVQRLPFLSSSNLSLDVLRGNDETI 112
N K N T+ N+ +F P L+ + + V + + F N+ +++L N E I
Sbjct: 516 NNHKQNLMTVANLGVVFGPTLLRPQEETVAAIMDIKF---QNIVIEILIENHEKI 567
>gi|50843948 Rho GTPase activating protein 10 [Homo sapiens]
Length = 786
Score = 26.2 bits (56), Expect = 9.5
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 58 NQDKMNFSTLRNIQGLFAPLKLQMEFKAVQQVQRLPFLSSSNLSLDVLRGNDETI 112
N K N T+ N+ +F P ++ + + V + L F N+ +++L N E I
Sbjct: 522 NHSKQNLMTVANLGVVFGPTLMRPQEETVAALMDLKF---QNIVVEILIENHEKI 573
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.135 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,860,752
Number of Sequences: 37866
Number of extensions: 182228
Number of successful extensions: 430
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 428
Number of HSP's gapped (non-prelim): 11
length of query: 141
length of database: 18,247,518
effective HSP length: 92
effective length of query: 49
effective length of database: 14,763,846
effective search space: 723428454
effective search space used: 723428454
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.