Search of human proteins with 7661672

Search of human proteins with 7661672

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|7661672 DNA polymerase delta interacting protein 2 [Homo
sapiens]
         (368 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|7661672 DNA polymerase delta interacting protein 2 [Homo sapi...   767   0.0  
gi|15812186 F-box only protein 3 isoform 1 [Homo sapiens]              60   4e-09
gi|15812188 F-box only protein 3 isoform 2 [Homo sapiens]              60   4e-09
gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens]             29   5.9  
gi|193082993 GTP binding protein 3 (mitochondrial) isoform III [...    29   5.9  
gi|193082991 GTP binding protein 3 (mitochondrial) isoform V [Ho...    29   5.9  
gi|193082988 GTP binding protein 3 (mitochondrial) isoform IV [H...    29   5.9  
gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens]             29   5.9  
gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens]             29   5.9  
gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens]             29   5.9  
gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens]             29   5.9  

>gi|7661672 DNA polymerase delta interacting protein 2 [Homo
           sapiens]
          Length = 368

 Score =  767 bits (1981), Expect = 0.0
 Identities = 368/368 (100%), Positives = 368/368 (100%)

Query: 1   MAACTARRALAVGSRWWSRSLTGARWPRPLCAAAGAGAFSPASTTTTRRHLSSRNRPEGK 60
           MAACTARRALAVGSRWWSRSLTGARWPRPLCAAAGAGAFSPASTTTTRRHLSSRNRPEGK
Sbjct: 1   MAACTARRALAVGSRWWSRSLTGARWPRPLCAAAGAGAFSPASTTTTRRHLSSRNRPEGK 60

Query: 61  VLETVGVFEVPKQNGKYETGQLFLHSIFGYRGVVLFPWQARLYDRDVASAAPEKAENPAG 120
           VLETVGVFEVPKQNGKYETGQLFLHSIFGYRGVVLFPWQARLYDRDVASAAPEKAENPAG
Sbjct: 61  VLETVGVFEVPKQNGKYETGQLFLHSIFGYRGVVLFPWQARLYDRDVASAAPEKAENPAG 120

Query: 121 HGSKEVKGKTHTYYQVLIDARDCPHISQRSQTEAVTFLANHDDSRALYAIPGLDYVSHED 180
           HGSKEVKGKTHTYYQVLIDARDCPHISQRSQTEAVTFLANHDDSRALYAIPGLDYVSHED
Sbjct: 121 HGSKEVKGKTHTYYQVLIDARDCPHISQRSQTEAVTFLANHDDSRALYAIPGLDYVSHED 180

Query: 181 ILPYTSTDQVPIQHELFERFLLYDQTKAPPFVARETLRAWQEKNHPWLELSDVHRETTEN 240
           ILPYTSTDQVPIQHELFERFLLYDQTKAPPFVARETLRAWQEKNHPWLELSDVHRETTEN
Sbjct: 181 ILPYTSTDQVPIQHELFERFLLYDQTKAPPFVARETLRAWQEKNHPWLELSDVHRETTEN 240

Query: 241 IRVTVIPFYMGMREAQNSHVYWWRYCIRLENLDSDVVQLRERHWRIFSLSGTLETVRGRG 300
           IRVTVIPFYMGMREAQNSHVYWWRYCIRLENLDSDVVQLRERHWRIFSLSGTLETVRGRG
Sbjct: 241 IRVTVIPFYMGMREAQNSHVYWWRYCIRLENLDSDVVQLRERHWRIFSLSGTLETVRGRG 300

Query: 301 VVGREPVLSKEQPAFQYSSHVSLQASSGHMWGTFRFERPDGSHFDVRIPPFSLESNKDEK 360
           VVGREPVLSKEQPAFQYSSHVSLQASSGHMWGTFRFERPDGSHFDVRIPPFSLESNKDEK
Sbjct: 301 VVGREPVLSKEQPAFQYSSHVSLQASSGHMWGTFRFERPDGSHFDVRIPPFSLESNKDEK 360

Query: 361 TPPSGLHW 368
           TPPSGLHW
Sbjct: 361 TPPSGLHW 368


>gi|15812186 F-box only protein 3 isoform 1 [Homo sapiens]
          Length = 471

 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 41/123 (33%), Positives = 65/123 (52%), Gaps = 7/123 (5%)

Query: 237 TTENIRVTVIPFYMGMREAQNSHVYWWRYCIRLEN----LDSDVVQLRERHWRIFSLSGT 292
           TT +I V+V   ++    + +   Y++ Y IR+E     L     QL  R+WRI +  G 
Sbjct: 280 TTGDITVSVSTSFLPELSSVHPPHYFFTYRIRIEMSKDALPEKACQLDSRYWRITNAKGD 339

Query: 293 LETVRGRGVVGREPVLSKEQPAFQYSSHVSLQASSGHMWG--TFRFERPDGSHFDVRIPP 350
           +E V+G GVVG  P++S  +  ++Y+S  +   +SG+M G  TF F       F+V IP 
Sbjct: 340 VEEVQGPGVVGEFPIISPGR-VYEYTSCTTFSTTSGYMEGYYTFHFLYFKDKIFNVAIPR 398

Query: 351 FSL 353
           F +
Sbjct: 399 FHM 401


>gi|15812188 F-box only protein 3 isoform 2 [Homo sapiens]
          Length = 415

 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 41/123 (33%), Positives = 65/123 (52%), Gaps = 7/123 (5%)

Query: 237 TTENIRVTVIPFYMGMREAQNSHVYWWRYCIRLEN----LDSDVVQLRERHWRIFSLSGT 292
           TT +I V+V   ++    + +   Y++ Y IR+E     L     QL  R+WRI +  G 
Sbjct: 280 TTGDITVSVSTSFLPELSSVHPPHYFFTYRIRIEMSKDALPEKACQLDSRYWRITNAKGD 339

Query: 293 LETVRGRGVVGREPVLSKEQPAFQYSSHVSLQASSGHMWG--TFRFERPDGSHFDVRIPP 350
           +E V+G GVVG  P++S  +  ++Y+S  +   +SG+M G  TF F       F+V IP 
Sbjct: 340 VEEVQGPGVVGEFPIISPGR-VYEYTSCTTFSTTSGYMEGYYTFHFLYFKDKIFNVAIPR 398

Query: 351 FSL 353
           F +
Sbjct: 399 FHM 401


>gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens]
          Length = 2440

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 29/103 (28%), Positives = 40/103 (38%), Gaps = 2/103 (1%)

Query: 117  NPAGHGSKEVKGKTHTYYQVLIDARDCPHISQRSQTEAVTFLANHDDSRALYAIPGLDYV 176
            +P+   S  V+ KT   Y     A+   H    S+      +     SR   + P   +V
Sbjct: 2084 SPSALVSTPVRTKTSNRYSPESQAQSVHHQRPGSRVSPENLVDKSRGSRPGKS-PERSHV 2142

Query: 177  SHEDILPYTSTDQVPIQHELFERFLLYDQTKAPPFVARETLRA 219
            S E   P  S  QVP+ HE  +  LL  Q  A P   R   R+
Sbjct: 2143 SSEPYEPI-SPPQVPVVHEKQDSLLLLSQRGAEPAEQRNDARS 2184


>gi|193082993 GTP binding protein 3 (mitochondrial) isoform III
          [Homo sapiens]
          Length = 471

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 17/50 (34%), Positives = 23/50 (46%)

Query: 17 WSRSLTGARWPRPLCAAAGAGAFSPASTTTTRRHLSSRNRPEGKVLETVG 66
          W+ +   AR PR LC    +GA +P S  T     S + R    V+ T G
Sbjct: 6  WTLAAQAARGPRRLCTRRSSGAPAPGSGATIFALSSGQGRCGIAVIRTSG 55


>gi|193082991 GTP binding protein 3 (mitochondrial) isoform V
          [Homo sapiens]
          Length = 492

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 17/50 (34%), Positives = 23/50 (46%)

Query: 17 WSRSLTGARWPRPLCAAAGAGAFSPASTTTTRRHLSSRNRPEGKVLETVG 66
          W+ +   AR PR LC    +GA +P S  T     S + R    V+ T G
Sbjct: 6  WTLAAQAARGPRRLCTRRSSGAPAPGSGATIFALSSGQGRCGIAVIRTSG 55


>gi|193082988 GTP binding protein 3 (mitochondrial) isoform IV
          [Homo sapiens]
          Length = 524

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 17/50 (34%), Positives = 23/50 (46%)

Query: 17 WSRSLTGARWPRPLCAAAGAGAFSPASTTTTRRHLSSRNRPEGKVLETVG 66
          W+ +   AR PR LC    +GA +P S  T     S + R    V+ T G
Sbjct: 6  WTLAAQAARGPRRLCTRRSSGAPAPGSGATIFALSSGQGRCGIAVIRTSG 55


>gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens]
          Length = 338

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 1  MAACTARRALAVGSRWWSRSLTG--ARWPRPLCAAAGAG 37
          + AC  R AL VG+      + G  AR P PL A+AG G
Sbjct: 28 LRACAERAALEVGAASADTGVRGCGARGPAPLLASAGGG 66


>gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens]
          Length = 352

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 1  MAACTARRALAVGSRWWSRSLTG--ARWPRPLCAAAGAG 37
          + AC  R AL VG+      + G  AR P PL A+AG G
Sbjct: 28 LRACAERAALEVGAASADTGVRGCGARGPAPLLASAGGG 66


>gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens]
          Length = 341

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 1  MAACTARRALAVGSRWWSRSLTG--ARWPRPLCAAAGAG 37
          + AC  R AL VG+      + G  AR P PL A+AG G
Sbjct: 28 LRACAERAALEVGAASADTGVRGCGARGPAPLLASAGGG 66


>gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens]
          Length = 360

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 1  MAACTARRALAVGSRWWSRSLTG--ARWPRPLCAAAGAG 37
          + AC  R AL VG+      + G  AR P PL A+AG G
Sbjct: 28 LRACAERAALEVGAASADTGVRGCGARGPAPLLASAGGG 66


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.133    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,747,231
Number of Sequences: 37866
Number of extensions: 661707
Number of successful extensions: 1534
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1525
Number of HSP's gapped (non-prelim): 12
length of query: 368
length of database: 18,247,518
effective HSP length: 104
effective length of query: 264
effective length of database: 14,309,454
effective search space: 3777695856
effective search space used: 3777695856
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.