Search of human proteins with 75677381

Search of human proteins with 75677381

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|75677381 LIM homeobox transcription factor 1, alpha isoform
c [Homo sapiens]
         (100 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|75677381 LIM homeobox transcription factor 1, alpha isoform c...   212   6e-56
gi|41281895 LIM homeobox transcription factor 1, alpha isoform b...   212   6e-56
gi|28893581 LIM homeobox transcription factor 1, alpha isoform a...   212   6e-56
gi|4505007 LIM homeobox transcription factor 1, beta [Homo sapiens]   120   3e-28
gi|238859653 pleckstrin homology domain containing family A memb...    28   2.0  
gi|238859651 pleckstrin homology domain containing family A memb...    28   2.0  
gi|63252863 BTB (POZ) domain containing 12 [Homo sapiens]              27   2.7  
gi|52145305 patched 2 [Homo sapiens]                                   26   5.9  
gi|239753480 PREDICTED: hypothetical protein [Homo sapiens]            26   7.8  
gi|29501809 coiled-coil domain containing 116 [Homo sapiens]           26   7.8  

>gi|75677381 LIM homeobox transcription factor 1, alpha isoform c
           [Homo sapiens]
          Length = 100

 Score =  212 bits (539), Expect = 6e-56
 Identities = 100/100 (100%), Positives = 100/100 (100%)

Query: 1   MEGIMNPYTALPTPQQLLAIEQSVYSSDPFRQGLTPPQMPGDHMHPYGAEPLFHDLDSDD 60
           MEGIMNPYTALPTPQQLLAIEQSVYSSDPFRQGLTPPQMPGDHMHPYGAEPLFHDLDSDD
Sbjct: 1   MEGIMNPYTALPTPQQLLAIEQSVYSSDPFRQGLTPPQMPGDHMHPYGAEPLFHDLDSDD 60

Query: 61  TSLSNLGDCFLATSEAGPLQSRVGNPIDHLYSMQNSYFTS 100
           TSLSNLGDCFLATSEAGPLQSRVGNPIDHLYSMQNSYFTS
Sbjct: 61  TSLSNLGDCFLATSEAGPLQSRVGNPIDHLYSMQNSYFTS 100


>gi|41281895 LIM homeobox transcription factor 1, alpha isoform b
           [Homo sapiens]
          Length = 133

 Score =  212 bits (539), Expect = 6e-56
 Identities = 100/100 (100%), Positives = 100/100 (100%)

Query: 1   MEGIMNPYTALPTPQQLLAIEQSVYSSDPFRQGLTPPQMPGDHMHPYGAEPLFHDLDSDD 60
           MEGIMNPYTALPTPQQLLAIEQSVYSSDPFRQGLTPPQMPGDHMHPYGAEPLFHDLDSDD
Sbjct: 34  MEGIMNPYTALPTPQQLLAIEQSVYSSDPFRQGLTPPQMPGDHMHPYGAEPLFHDLDSDD 93

Query: 61  TSLSNLGDCFLATSEAGPLQSRVGNPIDHLYSMQNSYFTS 100
           TSLSNLGDCFLATSEAGPLQSRVGNPIDHLYSMQNSYFTS
Sbjct: 94  TSLSNLGDCFLATSEAGPLQSRVGNPIDHLYSMQNSYFTS 133


>gi|28893581 LIM homeobox transcription factor 1, alpha isoform a
           [Homo sapiens]
          Length = 382

 Score =  212 bits (539), Expect = 6e-56
 Identities = 100/100 (100%), Positives = 100/100 (100%)

Query: 1   MEGIMNPYTALPTPQQLLAIEQSVYSSDPFRQGLTPPQMPGDHMHPYGAEPLFHDLDSDD 60
           MEGIMNPYTALPTPQQLLAIEQSVYSSDPFRQGLTPPQMPGDHMHPYGAEPLFHDLDSDD
Sbjct: 283 MEGIMNPYTALPTPQQLLAIEQSVYSSDPFRQGLTPPQMPGDHMHPYGAEPLFHDLDSDD 342

Query: 61  TSLSNLGDCFLATSEAGPLQSRVGNPIDHLYSMQNSYFTS 100
           TSLSNLGDCFLATSEAGPLQSRVGNPIDHLYSMQNSYFTS
Sbjct: 343 TSLSNLGDCFLATSEAGPLQSRVGNPIDHLYSMQNSYFTS 382


>gi|4505007 LIM homeobox transcription factor 1, beta [Homo sapiens]
          Length = 372

 Score =  120 bits (300), Expect = 3e-28
 Identities = 64/102 (62%), Positives = 79/102 (77%), Gaps = 10/102 (9%)

Query: 1   MEGIMNPYTALPTPQQ-LLAIEQSVY-SSDPFRQGLTPPQMPGDHMHPYGAEPLFHDLDS 58
           MEG+M  YT L  PQQ ++A+EQS Y SSDPF+QGLTPPQMPG+       + +FHD+DS
Sbjct: 279 MEGMMASYTPLAPPQQQIVAMEQSPYGSSDPFQQGLTPPQMPGN-------DSIFHDIDS 331

Query: 59  DDTSLSNLGDCFLATSEAGPLQSRVGNPIDHLYSMQNSYFTS 100
           D TSL++L DCFL +S+ G LQ+RVGNPID LYSMQ+SYF S
Sbjct: 332 D-TSLTSLSDCFLGSSDVGSLQARVGNPIDRLYSMQSSYFAS 372


>gi|238859653 pleckstrin homology domain containing family A member
           4 isoform 2 [Homo sapiens]
          Length = 583

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 13/50 (26%), Positives = 23/50 (46%)

Query: 11  LPTPQQLLAIEQSVYSSDPFRQGLTPPQMPGDHMHPYGAEPLFHDLDSDD 60
           L +PQ  ++ +Q ++  +    GL  PQ P  H  P    P+    +S +
Sbjct: 446 LGSPQDRVSAQQQLWMVEDTLAGLGGPQKPPPHTEPDSPSPVLQGEESSE 495


>gi|238859651 pleckstrin homology domain containing family A member
           4 isoform 1 [Homo sapiens]
          Length = 779

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 13/50 (26%), Positives = 23/50 (46%)

Query: 11  LPTPQQLLAIEQSVYSSDPFRQGLTPPQMPGDHMHPYGAEPLFHDLDSDD 60
           L +PQ  ++ +Q ++  +    GL  PQ P  H  P    P+    +S +
Sbjct: 471 LGSPQDRVSAQQQLWMVEDTLAGLGGPQKPPPHTEPDSPSPVLQGEESSE 520


>gi|63252863 BTB (POZ) domain containing 12 [Homo sapiens]
          Length = 1834

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 21/75 (28%), Positives = 27/75 (36%), Gaps = 3/75 (4%)

Query: 4    IMNPYTALPTPQQLLAIEQSVYSSDPFRQGLTPPQMPGDHMHPYGAEPLFHDLDSDDTSL 63
            ++ P T  P          S  +SD  RQG   P  P    HP+ +    H +  D    
Sbjct: 1310 VIRPQTPPPQTPSSCLTPVSPGTSDGRRQGHRSPSRPHPGGHPHSSPLAPHPISGDRAHF 1369

Query: 64   SNLGDCFLATSEAGP 78
            S     FL  S  GP
Sbjct: 1370 SRR---FLKHSPPGP 1381


>gi|52145305 patched 2 [Homo sapiens]
          Length = 1203

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 36   PPQMPGDHMHPYGAEPLFHDLDSDDTSLSNLG 67
            PP +PG ++HP   EP +    +   +LS+ G
Sbjct: 1166 PPPLPGAYIHPAPDEPPWSPAATSSGNLSSRG 1197


>gi|239753480 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 1344

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 14/46 (30%), Positives = 19/46 (41%)

Query: 7   PYTALPTPQQLLAIEQSVYSSDPFRQGLTPPQMPGDHMHPYGAEPL 52
           P ++  TP Q      SV+ + P     TP Q  G     +G  PL
Sbjct: 239 PLSSWDTPTQFTKHHCSVHGTPPLSSRDTPAQFAGHPRSVHGTPPL 284


>gi|29501809 coiled-coil domain containing 116 [Homo sapiens]
          Length = 613

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 8   YTALPTPQQLLAIEQSVYSSDPFRQGLTPPQ 38
           YT LP  +QL  +E  +Y S     G +PP+
Sbjct: 547 YTNLPASRQLSPLEPKLYMSACTGMGSSPPK 577


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.134    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,546,191
Number of Sequences: 37866
Number of extensions: 201906
Number of successful extensions: 322
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 302
Number of HSP's gapped (non-prelim): 17
length of query: 100
length of database: 18,247,518
effective HSP length: 71
effective length of query: 29
effective length of database: 15,559,032
effective search space: 451211928
effective search space used: 451211928
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.