Guide to the Human Genome
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Name: SHPK Sequence: fasta or formatted (478aa) NCBI GI: 74315356
Description:

carbohydrate kinase-like

Referenced in:

Additional Enzymes and Related Sequences

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.1         53           2
 C cysteine            1.7          8           1
 D aspartate           4.0         19           2
 E glutamate           4.2         20           2
 F phenylalanine       3.3         16           1
 G glycine             7.9         38           2
 H histidine           2.7         13           1
 I isoleucine          3.1         15           1
 K lysine              1.7          8           1
 L leucine            10.3         49           2
 M methionine          2.9         14           1
 N asparagine          2.1         10           1
 P proline             5.9         28           1
 Q glutamine           6.3         30           2
 R arginine            5.6         27           2
 S serine              8.8         42           3
 T threonine           5.6         27           2
 V valine              9.0         43           2
 W tryptophan          1.9          9           1
 Y tyrosine            1.9          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   carbohydrate kinase-like 
GK                    0.021   glycerol kinase isoform c 
GK                    0.021   glycerol kinase isoform b 
GK                    0.020   glycerol kinase isoform a 
GK2                   0.019   glycerol kinase 2 
GK5                   0.012   glycerol kinase 5 (putative) 
RORA                  0.011   RAR-related orphan receptor A isoform b 
XYLB                  0.009   xylulokinase 
SOX30                 0.006   SRY (sex determining region Y)-box 30 isoform b [Homo...
SOX30                 0.006   SRY (sex determining region Y)-box 30 isoform a [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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