Guide to the Human Genome
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Name: SCGBL Sequence: fasta or formatted (96aa) NCBI GI: 70980552
Description:

secretoglobin-like

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.4         10           2
 C cysteine            5.2          5           1
 D aspartate           6.2          6           1
 E glutamate           6.2          6           2
 F phenylalanine       5.2          5           1
 G glycine             1.0          1           1
 H histidine           1.0          1           1
 I isoleucine          5.2          5           1
 K lysine              4.2          4           2
 L leucine            14.6         14           3
 M methionine          1.0          1           1
 N asparagine          5.2          5           1
 P proline             2.1          2           1
 Q glutamine           5.2          5           2
 R arginine            3.1          3           1
 S serine              8.3          8           1
 T threonine           4.2          4           1
 V valine             10.4         10           2
 W tryptophan          0.0          0           0
 Y tyrosine            1.0          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   secretoglobin-like 
LOC100130342          0.079   PREDICTED: hypothetical protein 
LOC100130342          0.079   PREDICTED: hypothetical protein 
LOC100130342          0.079   PREDICTED: hypothetical protein 
SCGB1D2               0.049   lipophilin B precursor 
WDR36                 0.012   WD repeat domain 36 
GALNT1                0.012   polypeptide N-acetylgalactosaminyltransferase 1 [Hom...
PCDHB9                0.012   protocadherin beta 9 precursor 
CHFR                  0.012   checkpoint with forkhead and ring finger domains is...
CHFR                  0.012   checkpoint with forkhead and ring finger domains is...
CHFR                  0.012   checkpoint with forkhead and ring finger domains is...
CHFR                  0.012   checkpoint with forkhead and ring finger domains is...
CHFR                  0.012   checkpoint with forkhead and ring finger domains is...
UBR2                  0.012   ubiquitin protein ligase E3 component n-recognin 2 [...
CNTD1                 0.006   cyclin N-terminal domain containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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