Guide to the Human Genome
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Search of human proteins with 13775226

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|13775226 glycosyltransferase 8 domain containing 2 [Homo
sapiens]
         (349 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|13775226 glycosyltransferase 8 domain containing 2 [Homo sapi...   721   0.0  
gi|23510346 glycosyltransferase 8 domain containing 1 [Homo sapi...   357   9e-99
gi|58331225 glycosyltransferase 8 domain containing 1 [Homo sapi...   357   9e-99
gi|8923855 glycosyltransferase 8 domain containing 1 [Homo sapiens]   357   9e-99
gi|153791276 glycosyltransferase 8 domain containing 3 isoform 2...    31   1.9  
gi|153791362 glycosyltransferase 8 domain containing 3 isoform 1...    31   1.9  
gi|14150104 transmembrane protein 175 [Homo sapiens]                   30   3.2  
gi|122937187 glycosyltransferase 8 domain containing 4 [Homo sap...    29   7.2  
gi|238859557 regulatory factor X1 [Homo sapiens]                       28   9.4  
gi|157412249 RUN and SH3 domain containing 1 isoform c [Homo sap...    28   9.4  
gi|157412245 RUN and SH3 domain containing 1 isoform a [Homo sap...    28   9.4  
gi|42476123 RUN and SH3 domain containing 1 isoform d [Homo sapi...    28   9.4  
gi|32528301 EPH receptor B4 precursor [Homo sapiens]                   28   9.4  
gi|116235482 glycosyltransferase-like 1B [Homo sapiens]                28   9.4  
gi|4758996 Ras-related protein Rab-33A [Homo sapiens]                  28   9.4  

>gi|13775226 glycosyltransferase 8 domain containing 2 [Homo
           sapiens]
          Length = 349

 Score =  721 bits (1862), Expect = 0.0
 Identities = 349/349 (100%), Positives = 349/349 (100%)

Query: 1   MALLRKINQVLLFLLIVTLCVILYKKVHKGTVPKNDADDESETPEELEEEIPVVICAAAG 60
           MALLRKINQVLLFLLIVTLCVILYKKVHKGTVPKNDADDESETPEELEEEIPVVICAAAG
Sbjct: 1   MALLRKINQVLLFLLIVTLCVILYKKVHKGTVPKNDADDESETPEELEEEIPVVICAAAG 60

Query: 61  RMGATMAAINSIYSNTDANILFYVVGLRNTLTRIRKWIEHSKLREINFKIVEFNPMVLKG 120
           RMGATMAAINSIYSNTDANILFYVVGLRNTLTRIRKWIEHSKLREINFKIVEFNPMVLKG
Sbjct: 61  RMGATMAAINSIYSNTDANILFYVVGLRNTLTRIRKWIEHSKLREINFKIVEFNPMVLKG 120

Query: 121 KIRPDSSRPELLQPLNFVRFYLPLLIHQHEKVIYLDDDVIVQGDIQELYDTTLALGHAAA 180
           KIRPDSSRPELLQPLNFVRFYLPLLIHQHEKVIYLDDDVIVQGDIQELYDTTLALGHAAA
Sbjct: 121 KIRPDSSRPELLQPLNFVRFYLPLLIHQHEKVIYLDDDVIVQGDIQELYDTTLALGHAAA 180

Query: 181 FSDDCDLPSAQDINRLVGLQNTYMGYLDYRKKAIKDLGISPSTCSFNPGVIVANMTEWKH 240
           FSDDCDLPSAQDINRLVGLQNTYMGYLDYRKKAIKDLGISPSTCSFNPGVIVANMTEWKH
Sbjct: 181 FSDDCDLPSAQDINRLVGLQNTYMGYLDYRKKAIKDLGISPSTCSFNPGVIVANMTEWKH 240

Query: 241 QRITKQLEKWMQKNVEENLYSSSLGGGVATSPMLIVFHGKYSTINPLWHIRHLGWNPDAR 300
           QRITKQLEKWMQKNVEENLYSSSLGGGVATSPMLIVFHGKYSTINPLWHIRHLGWNPDAR
Sbjct: 241 QRITKQLEKWMQKNVEENLYSSSLGGGVATSPMLIVFHGKYSTINPLWHIRHLGWNPDAR 300

Query: 301 YSEHFLQEAKLLHWNGRHKPWDFPSVHNDLWESWFVPDPAGIFKLNHHS 349
           YSEHFLQEAKLLHWNGRHKPWDFPSVHNDLWESWFVPDPAGIFKLNHHS
Sbjct: 301 YSEHFLQEAKLLHWNGRHKPWDFPSVHNDLWESWFVPDPAGIFKLNHHS 349


>gi|23510346 glycosyltransferase 8 domain containing 1 [Homo
           sapiens]
          Length = 371

 Score =  357 bits (916), Expect = 9e-99
 Identities = 172/357 (48%), Positives = 237/357 (66%), Gaps = 16/357 (4%)

Query: 5   RKINQVLLFLLIVTLCVILYKK-VHKGTVPKNDADDESET--------PEEL-------E 48
           RK+N ++L L +    ++L+   +   ++ +N+  D            P  L       +
Sbjct: 4   RKVNIIILVLAVALFLLVLHHNFLSLSSLLRNEVTDSGIVGPQPIDFVPNALRHAVDGRQ 63

Query: 49  EEIPVVICAAAGRMGATMAAINSIYSNTDANILFYVVGLRNTLTRIRKWIEHSKLREINF 108
           EEIPVVI A+  R+G  +AAINSI  NT +N++FY+V L NT   +R W+    L+ I +
Sbjct: 64  EEIPVVIAASEDRLGGAIAAINSIQHNTRSNVIFYIVTLNNTADHLRSWLNSDSLKSIRY 123

Query: 109 KIVEFNPMVLKGKIRPDSSRPELLQPLNFVRFYLPLLIHQHEKVIYLDDDVIVQGDIQEL 168
           KIV F+P +L+GK++ D  + E ++PL F RFYLP+L+   +K IY+DDDVIVQGDI  L
Sbjct: 124 KIVNFDPKLLEGKVKEDPDQGESMKPLTFARFYLPILVPSAKKAIYMDDDVIVQGDILAL 183

Query: 169 YDTTLALGHAAAFSDDCDLPSAQDINRLVGLQNTYMGYLDYRKKAIKDLGISPSTCSFNP 228
           Y+T L  GHAAAFS+DCD  S + + R  G Q  Y+GYLDY+K+ I+ L +  STCSFNP
Sbjct: 184 YNTALKPGHAAAFSEDCDSASTKVVIRGAGNQYNYIGYLDYKKERIRKLSMKASTCSFNP 243

Query: 229 GVIVANMTEWKHQRITKQLEKWMQKNVEENLYSSSLGGGVATSPMLIVFHGKYSTINPLW 288
           GV VAN+TEWK Q IT QLEKWM+ NVEE LYS +L G + T P+LIVF+ ++STI+P+W
Sbjct: 244 GVFVANLTEWKRQNITNQLEKWMKLNVEEGLYSRTLAGSITTPPLLIVFYQQHSTIDPMW 303

Query: 289 HIRHLGWNPDARYSEHFLQEAKLLHWNGRHKPWDFPSVHNDLWESWFVPDPAGIFKL 345
           ++RHLG +   RYS  F++ AKLLHWNG  KPW   + + D+WE W++PDP G F L
Sbjct: 304 NVRHLGSSAGKRYSPQFVKAAKLLHWNGHLKPWGRTASYTDVWEKWYIPDPTGKFNL 360


>gi|58331225 glycosyltransferase 8 domain containing 1 [Homo
           sapiens]
          Length = 371

 Score =  357 bits (916), Expect = 9e-99
 Identities = 172/357 (48%), Positives = 237/357 (66%), Gaps = 16/357 (4%)

Query: 5   RKINQVLLFLLIVTLCVILYKK-VHKGTVPKNDADDESET--------PEEL-------E 48
           RK+N ++L L +    ++L+   +   ++ +N+  D            P  L       +
Sbjct: 4   RKVNIIILVLAVALFLLVLHHNFLSLSSLLRNEVTDSGIVGPQPIDFVPNALRHAVDGRQ 63

Query: 49  EEIPVVICAAAGRMGATMAAINSIYSNTDANILFYVVGLRNTLTRIRKWIEHSKLREINF 108
           EEIPVVI A+  R+G  +AAINSI  NT +N++FY+V L NT   +R W+    L+ I +
Sbjct: 64  EEIPVVIAASEDRLGGAIAAINSIQHNTRSNVIFYIVTLNNTADHLRSWLNSDSLKSIRY 123

Query: 109 KIVEFNPMVLKGKIRPDSSRPELLQPLNFVRFYLPLLIHQHEKVIYLDDDVIVQGDIQEL 168
           KIV F+P +L+GK++ D  + E ++PL F RFYLP+L+   +K IY+DDDVIVQGDI  L
Sbjct: 124 KIVNFDPKLLEGKVKEDPDQGESMKPLTFARFYLPILVPSAKKAIYMDDDVIVQGDILAL 183

Query: 169 YDTTLALGHAAAFSDDCDLPSAQDINRLVGLQNTYMGYLDYRKKAIKDLGISPSTCSFNP 228
           Y+T L  GHAAAFS+DCD  S + + R  G Q  Y+GYLDY+K+ I+ L +  STCSFNP
Sbjct: 184 YNTALKPGHAAAFSEDCDSASTKVVIRGAGNQYNYIGYLDYKKERIRKLSMKASTCSFNP 243

Query: 229 GVIVANMTEWKHQRITKQLEKWMQKNVEENLYSSSLGGGVATSPMLIVFHGKYSTINPLW 288
           GV VAN+TEWK Q IT QLEKWM+ NVEE LYS +L G + T P+LIVF+ ++STI+P+W
Sbjct: 244 GVFVANLTEWKRQNITNQLEKWMKLNVEEGLYSRTLAGSITTPPLLIVFYQQHSTIDPMW 303

Query: 289 HIRHLGWNPDARYSEHFLQEAKLLHWNGRHKPWDFPSVHNDLWESWFVPDPAGIFKL 345
           ++RHLG +   RYS  F++ AKLLHWNG  KPW   + + D+WE W++PDP G F L
Sbjct: 304 NVRHLGSSAGKRYSPQFVKAAKLLHWNGHLKPWGRTASYTDVWEKWYIPDPTGKFNL 360


>gi|8923855 glycosyltransferase 8 domain containing 1 [Homo sapiens]
          Length = 371

 Score =  357 bits (916), Expect = 9e-99
 Identities = 172/357 (48%), Positives = 237/357 (66%), Gaps = 16/357 (4%)

Query: 5   RKINQVLLFLLIVTLCVILYKK-VHKGTVPKNDADDESET--------PEEL-------E 48
           RK+N ++L L +    ++L+   +   ++ +N+  D            P  L       +
Sbjct: 4   RKVNIIILVLAVALFLLVLHHNFLSLSSLLRNEVTDSGIVGPQPIDFVPNALRHAVDGRQ 63

Query: 49  EEIPVVICAAAGRMGATMAAINSIYSNTDANILFYVVGLRNTLTRIRKWIEHSKLREINF 108
           EEIPVVI A+  R+G  +AAINSI  NT +N++FY+V L NT   +R W+    L+ I +
Sbjct: 64  EEIPVVIAASEDRLGGAIAAINSIQHNTRSNVIFYIVTLNNTADHLRSWLNSDSLKSIRY 123

Query: 109 KIVEFNPMVLKGKIRPDSSRPELLQPLNFVRFYLPLLIHQHEKVIYLDDDVIVQGDIQEL 168
           KIV F+P +L+GK++ D  + E ++PL F RFYLP+L+   +K IY+DDDVIVQGDI  L
Sbjct: 124 KIVNFDPKLLEGKVKEDPDQGESMKPLTFARFYLPILVPSAKKAIYMDDDVIVQGDILAL 183

Query: 169 YDTTLALGHAAAFSDDCDLPSAQDINRLVGLQNTYMGYLDYRKKAIKDLGISPSTCSFNP 228
           Y+T L  GHAAAFS+DCD  S + + R  G Q  Y+GYLDY+K+ I+ L +  STCSFNP
Sbjct: 184 YNTALKPGHAAAFSEDCDSASTKVVIRGAGNQYNYIGYLDYKKERIRKLSMKASTCSFNP 243

Query: 229 GVIVANMTEWKHQRITKQLEKWMQKNVEENLYSSSLGGGVATSPMLIVFHGKYSTINPLW 288
           GV VAN+TEWK Q IT QLEKWM+ NVEE LYS +L G + T P+LIVF+ ++STI+P+W
Sbjct: 244 GVFVANLTEWKRQNITNQLEKWMKLNVEEGLYSRTLAGSITTPPLLIVFYQQHSTIDPMW 303

Query: 289 HIRHLGWNPDARYSEHFLQEAKLLHWNGRHKPWDFPSVHNDLWESWFVPDPAGIFKL 345
           ++RHLG +   RYS  F++ AKLLHWNG  KPW   + + D+WE W++PDP G F L
Sbjct: 304 NVRHLGSSAGKRYSPQFVKAAKLLHWNGHLKPWGRTASYTDVWEKWYIPDPTGKFNL 360


>gi|153791276 glycosyltransferase 8 domain containing 3 isoform 2
           [Homo sapiens]
          Length = 409

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 22/114 (19%), Positives = 49/114 (42%), Gaps = 21/114 (18%)

Query: 130 ELLQPLNFVRFYLPLLIHQHEKVIYLDDDVIVQGDIQELYDTTLALG--HAAAFSDDCDL 187
           +L +P    R +LPL++ + + ++Y+D D++    + +++           AA + + + 
Sbjct: 160 KLFKPCASQRLFLPLILKEVDSLLYVDTDILFLRPVDDIWSLLKKFNSTQIAAMAPEHEE 219

Query: 188 PSAQDINRLVGLQNTYMGYLDYRKKAIKDLGISPSTCSFNPGVIVANMTEWKHQ 241
           P        +G  N +  +  Y K  +            N GV++ NMT  + +
Sbjct: 220 PR-------IGWYNRFARHPYYGKTGV------------NSGVMLMNMTRMRRK 254


>gi|153791362 glycosyltransferase 8 domain containing 3 isoform 1
           [Homo sapiens]
          Length = 440

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 22/114 (19%), Positives = 49/114 (42%), Gaps = 21/114 (18%)

Query: 130 ELLQPLNFVRFYLPLLIHQHEKVIYLDDDVIVQGDIQELYDTTLALG--HAAAFSDDCDL 187
           +L +P    R +LPL++ + + ++Y+D D++    + +++           AA + + + 
Sbjct: 191 KLFKPCASQRLFLPLILKEVDSLLYVDTDILFLRPVDDIWSLLKKFNSTQIAAMAPEHEE 250

Query: 188 PSAQDINRLVGLQNTYMGYLDYRKKAIKDLGISPSTCSFNPGVIVANMTEWKHQ 241
           P        +G  N +  +  Y K  +            N GV++ NMT  + +
Sbjct: 251 PR-------IGWYNRFARHPYYGKTGV------------NSGVMLMNMTRMRRK 285


>gi|14150104 transmembrane protein 175 [Homo sapiens]
          Length = 504

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 12/40 (30%), Positives = 20/40 (50%)

Query: 253 KNVEENLYSSSLGGGVATSPMLIVFHGKYSTINPLWHIRH 292
           K+V+E    S +    AT P  + + G ++T+  LW   H
Sbjct: 289 KDVKERFSGSLVAALSATGPRFLAYFGSFATVGLLWFAHH 328


>gi|122937187 glycosyltransferase 8 domain containing 4 [Homo
           sapiens]
          Length = 443

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 29/134 (21%), Positives = 59/134 (44%), Gaps = 20/134 (14%)

Query: 44  PEELEEEIPVVICAAAGRMGATMAAINSIYSNTDANILFYVV---GLRNTLTR-IRKWIE 99
           P EL   + VV C    R+  T+  + S    +   I F++     L+    + +R+W +
Sbjct: 105 PPELWIHLAVVACG--NRLEETLVMLKSAVLFSHRKIQFHIFTEDSLKPEFDKQLRQWPD 162

Query: 100 -HSKLREINFKIVEF---NPMVLKGKIRPDSSRPELLQPLNFVRFYLPLLIHQHEKVIYL 155
            ++K  E     + F   NP   K          +L +P    R +LP+++   + ++Y+
Sbjct: 163 SYTKKFEHRIYPITFSVGNPQEWK----------KLFKPCAAQRLFLPVILKDVDSLLYV 212

Query: 156 DDDVIVQGDIQELY 169
           D DV+    + +++
Sbjct: 213 DTDVLFLRPVDDIW 226


>gi|238859557 regulatory factor X1 [Homo sapiens]
          Length = 979

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 36  DADDESETPEELEEEIPVVICAAAG----RMGATMAAINSIYSNTDANILF 82
           D D+E E  EE E+E+P  I  AAG     +G       +  + TDA  LF
Sbjct: 922 DKDEEEEEEEESEDELPQDISLAAGGESPALGPETLEPPAKLARTDARGLF 972


>gi|157412249 RUN and SH3 domain containing 1 isoform c [Homo
           sapiens]
          Length = 492

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 32/149 (21%), Positives = 59/149 (39%), Gaps = 19/149 (12%)

Query: 14  LLIVTLCVILYKKVHKGTVPKNDADDESETPEELEEEIPVVICAAAGRMGATMAAINSIY 73
           L++ TLC  L+  V  G  P        +         P  +  A+ + G++  ++ ++Y
Sbjct: 116 LVLTTLCPALHALVADGLKPFR-----KDLITGQRRSSPWSVVEASVKPGSSTRSLGTLY 170

Query: 74  SNTD---------ANILFYVVGLRNTLTRIRKWI----EHSKLREINFKIVEFNPMVLKG 120
           S            +    +++GL NT  ++  W     E + L  + +    F  +   G
Sbjct: 171 SQVSRLAPLSSSRSRFHAFILGLLNT-KQLELWFSSLQEDAGLLSLLYLPTGFFSLARGG 229

Query: 121 KIRPDSSRPELLQPLNFVRFYLPLLIHQH 149
                +    LLQPL+ + F+L LL   H
Sbjct: 230 CPSLSTELLLLLQPLSVLTFHLDLLFEHH 258


>gi|157412245 RUN and SH3 domain containing 1 isoform a [Homo
           sapiens]
          Length = 902

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 32/149 (21%), Positives = 59/149 (39%), Gaps = 19/149 (12%)

Query: 14  LLIVTLCVILYKKVHKGTVPKNDADDESETPEELEEEIPVVICAAAGRMGATMAAINSIY 73
           L++ TLC  L+  V  G  P        +         P  +  A+ + G++  ++ ++Y
Sbjct: 526 LVLTTLCPALHALVADGLKPFR-----KDLITGQRRSSPWSVVEASVKPGSSTRSLGTLY 580

Query: 74  SNTD---------ANILFYVVGLRNTLTRIRKWI----EHSKLREINFKIVEFNPMVLKG 120
           S            +    +++GL NT  ++  W     E + L  + +    F  +   G
Sbjct: 581 SQVSRLAPLSSSRSRFHAFILGLLNT-KQLELWFSSLQEDAGLLSLLYLPTGFFSLARGG 639

Query: 121 KIRPDSSRPELLQPLNFVRFYLPLLIHQH 149
                +    LLQPL+ + F+L LL   H
Sbjct: 640 CPSLSTELLLLLQPLSVLTFHLDLLFEHH 668


>gi|42476123 RUN and SH3 domain containing 1 isoform d [Homo
           sapiens]
          Length = 433

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 32/149 (21%), Positives = 59/149 (39%), Gaps = 19/149 (12%)

Query: 14  LLIVTLCVILYKKVHKGTVPKNDADDESETPEELEEEIPVVICAAAGRMGATMAAINSIY 73
           L++ TLC  L+  V  G  P        +         P  +  A+ + G++  ++ ++Y
Sbjct: 57  LVLTTLCPALHALVADGLKPFR-----KDLITGQRRSSPWSVVEASVKPGSSTRSLGTLY 111

Query: 74  SNTD---------ANILFYVVGLRNTLTRIRKWI----EHSKLREINFKIVEFNPMVLKG 120
           S            +    +++GL NT  ++  W     E + L  + +    F  +   G
Sbjct: 112 SQVSRLAPLSSSRSRFHAFILGLLNT-KQLELWFSSLQEDAGLLSLLYLPTGFFSLARGG 170

Query: 121 KIRPDSSRPELLQPLNFVRFYLPLLIHQH 149
                +    LLQPL+ + F+L LL   H
Sbjct: 171 CPSLSTELLLLLQPLSVLTFHLDLLFEHH 199


>gi|32528301 EPH receptor B4 precursor [Homo sapiens]
          Length = 987

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 247 LEKWMQKNVEENLYSSSLGGGVA---TSPMLIVFHGKYSTINPLWHIRHLGW 295
           L +++++N  +  Y+SSLGG +    T+P  I F  K+++ +  W    + W
Sbjct: 761 LSRFLEENSSDPTYTSSLGGKIPIRWTAPEAIAFR-KFTSASDAWSYGIVMW 811


>gi|116235482 glycosyltransferase-like 1B [Homo sapiens]
          Length = 721

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 42/170 (24%), Positives = 69/170 (40%), Gaps = 21/170 (12%)

Query: 151 KVIYLDDDVIVQGDIQELYDTTLALGHAAAFSDDCDLPSAQDINRLVGLQNTYMGYLDYR 210
           +VI LD DV    DI EL+         A FSD       Q I  +    + Y+G L   
Sbjct: 196 RVIVLDTDVTFASDISELW------ALFAHFSD------TQAIGLVENQSDWYLGNLWKN 243

Query: 211 KKAIKDLGISPSTCSFNPGVIVANMTEWKHQRITKQLEKWMQKNVEENLYSSSLGGGVAT 270
            +    LG       FN GVI+  +   + Q   +Q+ +   +    +L ++SL      
Sbjct: 244 HRPWPALG-----RGFNTGVILLRLDRLR-QAGWEQMWRLTARRELLSLPATSLADQDIF 297

Query: 271 SPMLIVFHGKYSTINPLWHIRHLGWNPDAR-YSEHFLQEAKLLHWNGRHK 319
           + ++    G    +  +W+++        R YSE    + K++HWN   K
Sbjct: 298 NAVIKEHPGLVQRLPCVWNVQLSDHTLAERCYSE--ASDLKVIHWNSPKK 345


>gi|4758996 Ras-related protein Rab-33A [Homo sapiens]
          Length = 237

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 5/75 (6%)

Query: 30  GTVP-KNDA----DDESETPEELEEEIPVVICAAAGRMGATMAAINSIYSNTDANILFYV 84
           GT P K +A    D   +T E   E+I V +   AG+     + +   Y N  A +  Y 
Sbjct: 59  GTFPDKTEATIGVDFREKTVEIEGEKIKVQVWDTAGQERFRKSMVEHYYRNVHAVVFVYD 118

Query: 85  VGLRNTLTRIRKWIE 99
           V    + T ++ WI+
Sbjct: 119 VTKMTSFTNLKMWIQ 133


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.138    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,937,068
Number of Sequences: 37866
Number of extensions: 618912
Number of successful extensions: 1589
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1581
Number of HSP's gapped (non-prelim): 15
length of query: 349
length of database: 18,247,518
effective HSP length: 103
effective length of query: 246
effective length of database: 14,347,320
effective search space: 3529440720
effective search space used: 3529440720
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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