Search of human proteins with 13775198

Search of human proteins with 13775198

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|13775198 SH3 domain binding glutamic acid-rich protein like
3 [Homo sapiens]
         (93 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|13775198 SH3 domain binding glutamic acid-rich protein like 3...   184   1e-47
gi|13899317 SH3 domain binding glutamic acid-rich protein like 2...    72   1e-13
gi|239757584 PREDICTED: similar to SH3-binding domain and glutam...    61   2e-10
gi|6677929 SH3-binding domain and glutamic acid-rich protein iso...    61   2e-10
gi|4506925 SH3 domain binding glutamic acid-rich protein like [H...    57   2e-09
gi|48762712 SH3-binding domain and glutamic acid-rich protein is...    43   5e-05
gi|33286444 mastermind-like 2 [Homo sapiens]                           27   2.7  
gi|38327632 discoidin domain receptor family, member 1 isoform b...    27   4.6  

>gi|13775198 SH3 domain binding glutamic acid-rich protein like 3
          [Homo sapiens]
          Length = 93

 Score =  184 bits (467), Expect = 1e-47
 Identities = 93/93 (100%), Positives = 93/93 (100%)

Query: 1  MSGLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRALAGNPKAT 60
          MSGLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRALAGNPKAT
Sbjct: 1  MSGLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRALAGNPKAT 60

Query: 61 PPQIVNGDQYCGDYELFVEAVEQNTLQEFLKLA 93
          PPQIVNGDQYCGDYELFVEAVEQNTLQEFLKLA
Sbjct: 61 PPQIVNGDQYCGDYELFVEAVEQNTLQEFLKLA 93


>gi|13899317 SH3 domain binding glutamic acid-rich protein like 2
          [Homo sapiens]
          Length = 107

 Score = 71.6 bits (174), Expect = 1e-13
 Identities = 39/97 (40%), Positives = 55/97 (56%), Gaps = 10/97 (10%)

Query: 4  LRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRD--------EMRALAG 55
          +RV+  S +G   IK +Q +V R L+  +I+++ VDI+     R         E +   G
Sbjct: 3  IRVFIASSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNVPPEKKPTQG 62

Query: 56 NPKATPPQIVNGDQYCGDYELFVEAVEQNTLQEFLKL 92
          NP   PPQI NGD+YCGDY+ F E+ E NT+  FL L
Sbjct: 63 NP--LPPQIFNGDRYCGDYDSFFESKESNTVFSFLGL 97


>gi|239757584 PREDICTED: similar to SH3-binding domain and glutamic
           acid-rich protein [Homo sapiens]
          Length = 218

 Score = 61.2 bits (147), Expect = 2e-10
 Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 6/96 (6%)

Query: 4   LRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRALAGNPKAT--- 60
           ++V+  + +GS  I+ +Q EV   L+  +I ++ +DI+ D   R  MR      K     
Sbjct: 66  IKVFVATSSGSIAIRKKQQEVVGFLEANKIDFKELDIAGDEDNRRWMRENVPGEKKPQNG 125

Query: 61  ---PPQIVNGDQYCGDYELFVEAVEQNTLQEFLKLA 93
              PPQI N +QYCGD++ F  A E+N +  FL LA
Sbjct: 126 IPLPPQIFNEEQYCGDFDSFFSAKEENIIYSFLGLA 161


>gi|6677929 SH3-binding domain and glutamic acid-rich protein
           isoform a [Homo sapiens]
          Length = 239

 Score = 61.2 bits (147), Expect = 2e-10
 Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 6/96 (6%)

Query: 4   LRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRALAGNPKAT--- 60
           ++V+  + +GS  I+ +Q EV   L+  +I ++ +DI+ D   R  MR      K     
Sbjct: 66  IKVFVATSSGSIAIRKKQQEVVGFLEANKIDFKELDIAGDEDNRRWMRENVPGEKKPQNG 125

Query: 61  ---PPQIVNGDQYCGDYELFVEAVEQNTLQEFLKLA 93
              PPQI N +QYCGD++ F  A E+N +  FL LA
Sbjct: 126 IPLPPQIFNEEQYCGDFDSFFSAKEENIIYSFLGLA 161


>gi|4506925 SH3 domain binding glutamic acid-rich protein like
          [Homo sapiens]
          Length = 114

 Score = 57.4 bits (137), Expect = 2e-09
 Identities = 37/97 (38%), Positives = 49/97 (50%), Gaps = 10/97 (10%)

Query: 4  LRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRA--------LAG 55
          +RVY  S +GS  IK +Q +V   L+  +I ++  DI+ +   R  MR           G
Sbjct: 3  IRVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVPENSRPATG 62

Query: 56 NPKATPPQIVNGDQYCGDYELFVEAVEQNTLQEFLKL 92
           P   PPQI N  QY GDY+ F EA E N +  FL L
Sbjct: 63 YP--LPPQIFNESQYRGDYDAFFEARENNAVYAFLGL 97


>gi|48762712 SH3-binding domain and glutamic acid-rich protein
          isoform b [Homo sapiens]
          Length = 128

 Score = 43.1 bits (100), Expect = 5e-05
 Identities = 18/33 (54%), Positives = 23/33 (69%)

Query: 61 PPQIVNGDQYCGDYELFVEAVEQNTLQEFLKLA 93
          PPQI N +QYCGD++ F  A E+N +  FL LA
Sbjct: 18 PPQIFNEEQYCGDFDSFFSAKEENIIYSFLGLA 50


>gi|33286444 mastermind-like 2 [Homo sapiens]
          Length = 1156

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 4/57 (7%)

Query: 12  TGSREIKSQQSEVTRILDGKR--IQYQLVDISQDNALRDEMRALAGNPKATPPQIVN 66
           TGS  + SQQS + + L GK+  +Q Q+++  Q   L+ +M  LA   K  P   +N
Sbjct: 737 TGSGYMNSQQSLLNQQLMGKKQTLQRQIMEQKQQLLLQQQM--LADAEKIAPQDQIN 791


>gi|38327632 discoidin domain receptor family, member 1 isoform b
           [Homo sapiens]
          Length = 876

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query: 55  GNPKATPPQIVNGDQYCGDY 74
           GNP  + P + NG  Y GDY
Sbjct: 491 GNPPHSAPCVPNGSAYSGDY 510


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.131    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,090,709
Number of Sequences: 37866
Number of extensions: 101787
Number of successful extensions: 274
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 262
Number of HSP's gapped (non-prelim): 8
length of query: 93
length of database: 18,247,518
effective HSP length: 64
effective length of query: 29
effective length of database: 15,824,094
effective search space: 458898726
effective search space used: 458898726
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.