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Search of human proteins with 6680081
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|6680081 putative GR6 protein [Homo sapiens]
(149 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|6680081 putative GR6 protein [Homo sapiens] 312 8e-86
gi|239757813 PREDICTED: hypothetical protein [Homo sapiens] 33 0.12
gi|89060771 PREDICTED: hypothetical protein [Homo sapiens] 33 0.12
gi|51477177 PREDICTED: hypothetical protein [Homo sapiens] 33 0.12
gi|23397566 transmembrane protein 151A [Homo sapiens] 32 0.20
gi|38683827 ADAM metallopeptidase with thrombospondin type 1 mot... 30 0.58
gi|23397642 GREB1 protein isoform a [Homo sapiens] 28 2.2
gi|27437042 colony stimulating factor 3 receptor isoform b precu... 28 2.9
gi|112821688 G protein-regulated inducer of neurite outgrowth 2 ... 28 2.9
gi|169217059 PREDICTED: hypothetical protein [Homo sapiens] 27 4.9
gi|89060782 PREDICTED: hypothetical protein [Homo sapiens] 27 4.9
gi|41151527 PREDICTED: hypothetical protein [Homo sapiens] 27 4.9
gi|51477179 PREDICTED: hypothetical protein [Homo sapiens] 27 4.9
gi|4826976 prenyl protein peptidase RCE1 isoform 1 [Homo sapiens] 27 4.9
gi|14249534 hypothetical protein LOC84915 [Homo sapiens] 27 4.9
gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo s... 27 6.4
gi|224451135 splicing factor, arginine/serine-rich 15 isoform 3 ... 27 6.4
gi|224451133 splicing factor, arginine/serine-rich 15 isoform 2 ... 27 6.4
gi|40789229 splicing factor, arginine/serine-rich 15 isoform 1 [... 27 6.4
gi|148664238 a disintegrin and metalloprotease domain 32 [Homo s... 27 6.4
gi|44888818 DIP2 disco-interacting protein 2 homolog C [Homo sap... 27 8.3
>gi|6680081 putative GR6 protein [Homo sapiens]
Length = 149
Score = 312 bits (799), Expect = 8e-86
Identities = 149/149 (100%), Positives = 149/149 (100%)
Query: 1 MKEALHQIVVRCSELVSSTSLPRLSVSRLQGPPDSQPLGTLGQGGWKLLGIVGSLAPETL 60
MKEALHQIVVRCSELVSSTSLPRLSVSRLQGPPDSQPLGTLGQGGWKLLGIVGSLAPETL
Sbjct: 1 MKEALHQIVVRCSELVSSTSLPRLSVSRLQGPPDSQPLGTLGQGGWKLLGIVGSLAPETL 60
Query: 61 GGLGTEFGPCTHPLPFDMVRERERDDELRQGWLLQCPQCARTLLCHCGPFLTPPSQTSSS 120
GGLGTEFGPCTHPLPFDMVRERERDDELRQGWLLQCPQCARTLLCHCGPFLTPPSQTSSS
Sbjct: 61 GGLGTEFGPCTHPLPFDMVRERERDDELRQGWLLQCPQCARTLLCHCGPFLTPPSQTSSS 120
Query: 121 GFQLCSLKPSGSLVTATEPLSNFAFSYFP 149
GFQLCSLKPSGSLVTATEPLSNFAFSYFP
Sbjct: 121 GFQLCSLKPSGSLVTATEPLSNFAFSYFP 149
>gi|239757813 PREDICTED: hypothetical protein [Homo sapiens]
Length = 287
Score = 32.7 bits (73), Expect = 0.12
Identities = 22/77 (28%), Positives = 28/77 (36%), Gaps = 14/77 (18%)
Query: 46 WKLLGIVGSLAPETLGGLGTEFGPCTHPLPFDMVRERERDDELRQGWLLQCPQCARTLL- 104
W+ GS P L P P D+ +RER + R+ W L C A+ LL
Sbjct: 79 WRRAREAGSRDPLPSAPLPDPPAPAESPKELDLGAQRERWETFRKLWGLSCEGAAKVLLD 138
Query: 105 -------------CHCG 108
CHCG
Sbjct: 139 TFEYPGLVHHTGGCHCG 155
>gi|89060771 PREDICTED: hypothetical protein [Homo sapiens]
Length = 287
Score = 32.7 bits (73), Expect = 0.12
Identities = 22/77 (28%), Positives = 28/77 (36%), Gaps = 14/77 (18%)
Query: 46 WKLLGIVGSLAPETLGGLGTEFGPCTHPLPFDMVRERERDDELRQGWLLQCPQCARTLL- 104
W+ GS P L P P D+ +RER + R+ W L C A+ LL
Sbjct: 79 WRRAREAGSRDPLPSAPLPDPPAPAESPKELDLGAQRERWETFRKLWGLSCEGAAKVLLD 138
Query: 105 -------------CHCG 108
CHCG
Sbjct: 139 TFEYPGLVHHTGGCHCG 155
>gi|51477177 PREDICTED: hypothetical protein [Homo sapiens]
Length = 287
Score = 32.7 bits (73), Expect = 0.12
Identities = 22/77 (28%), Positives = 28/77 (36%), Gaps = 14/77 (18%)
Query: 46 WKLLGIVGSLAPETLGGLGTEFGPCTHPLPFDMVRERERDDELRQGWLLQCPQCARTLL- 104
W+ GS P L P P D+ +RER + R+ W L C A+ LL
Sbjct: 79 WRRAREAGSRDPLPSAPLPDPPAPAESPKELDLGAQRERWETFRKLWGLSCEGAAKVLLD 138
Query: 105 -------------CHCG 108
CHCG
Sbjct: 139 TFEYPGLVHHTGGCHCG 155
>gi|23397566 transmembrane protein 151A [Homo sapiens]
Length = 468
Score = 32.0 bits (71), Expect = 0.20
Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 11 RCSELVSSTSLPRLSVSRLQGP--PDSQPLGTLGQGGWKLLGIVGSLAPETLGGLGTEFG 68
RC VSS SLP +R GP P S+ +LG GG G+ SL+ LG G +
Sbjct: 379 RCRRSVSSNSLPP---ARPSGPRLPFSRSRLSLGAGGRATPGVFRSLSGGPLGRRGEDTE 435
Query: 69 PCTHP 73
P P
Sbjct: 436 PLESP 440
>gi|38683827 ADAM metallopeptidase with thrombospondin type 1 motif, 7
preproprotein [Homo sapiens]
Length = 1686
Score = 30.4 bits (67), Expect = 0.58
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 21 LPRLSVSRLQGPPDSQPLGTLGQGGWKL--LGIVGSLAPETLGGLGTEFGPCTHPLP 75
LP + V P + T G G W L + + G+ P TL GLG P +P P
Sbjct: 1300 LPEMKVRDSSLEPGTPSFPTPGPGSWDLQTVAVWGTFLPTTLTGLGHMPEPALNPGP 1356
>gi|23397642 GREB1 protein isoform a [Homo sapiens]
Length = 1949
Score = 28.5 bits (62), Expect = 2.2
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Query: 92 WLLQCPQCARTLLCHCGPFLTPPS-------QTSSSGF-QLCSLKPSGSLVTAT 137
W+LQ QC+ T C P + P T SSG + SL PS S++ A+
Sbjct: 1240 WVLQASQCSLTKACRQPPIVFLPKLVYDMVVSTDSSGLPKAASLLPSPSVMWAS 1293
>gi|27437042 colony stimulating factor 3 receptor isoform b
precursor [Homo sapiens]
Length = 769
Score = 28.1 bits (61), Expect = 2.9
Identities = 15/56 (26%), Positives = 25/56 (44%)
Query: 87 ELRQGWLLQCPQCARTLLCHCGPFLTPPSQTSSSGFQLCSLKPSGSLVTATEPLSN 142
+L W CPQ R + C PS +S ++ + GS +TA P+++
Sbjct: 634 QLTAAWAPGCPQSWRRMPSSCPALARHPSPSSQCWRRMKRSRCPGSPITAQRPVAS 689
>gi|112821688 G protein-regulated inducer of neurite outgrowth 2
[Homo sapiens]
Length = 458
Score = 28.1 bits (61), Expect = 2.9
Identities = 23/58 (39%), Positives = 26/58 (44%), Gaps = 12/58 (20%)
Query: 13 SELVSSTSL--------PRLSVSRLQGPP----DSQPLGTLGQGGWKLLGIVGSLAPE 58
S+LV ST + LS S L P QP GT GQGG G+ LAPE
Sbjct: 122 SDLVRSTQMRGHSGARKASLSCSALGSSPVHRAQLQPGGTSGQGGQAPAGLERDLAPE 179
>gi|169217059 PREDICTED: hypothetical protein [Homo sapiens]
Length = 272
Score = 27.3 bits (59), Expect = 4.9
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 14/55 (25%)
Query: 68 GPCTHPLPFDMVRERERDDELRQGWLLQCPQCARTLL--------------CHCG 108
GP P D+ +RER + R+ L C A+ LL CHCG
Sbjct: 86 GPAPSPKDLDLGAQRERWETFRKLRGLSCEGAAKVLLDTFEYPGLVHHTGGCHCG 140
>gi|89060782 PREDICTED: hypothetical protein [Homo sapiens]
Length = 272
Score = 27.3 bits (59), Expect = 4.9
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 14/55 (25%)
Query: 68 GPCTHPLPFDMVRERERDDELRQGWLLQCPQCARTLL--------------CHCG 108
GP P D+ +RER + R+ L C A+ LL CHCG
Sbjct: 86 GPAPSPKDLDLGAQRERWETFRKLRGLSCEGAAKVLLDTFEYPGLVHHTGGCHCG 140
>gi|41151527 PREDICTED: hypothetical protein [Homo sapiens]
Length = 272
Score = 27.3 bits (59), Expect = 4.9
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 14/55 (25%)
Query: 68 GPCTHPLPFDMVRERERDDELRQGWLLQCPQCARTLL--------------CHCG 108
GP P D+ +RER + R+ L C A+ LL CHCG
Sbjct: 86 GPAPSPKDLDLGAQRERWETFRKLRGLSCEGAAKVLLDTFEYPGLVHHTGGCHCG 140
>gi|51477179 PREDICTED: hypothetical protein [Homo sapiens]
Length = 272
Score = 27.3 bits (59), Expect = 4.9
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 14/55 (25%)
Query: 68 GPCTHPLPFDMVRERERDDELRQGWLLQCPQCARTLL--------------CHCG 108
GP P D+ +RER + R+ L C A+ LL CHCG
Sbjct: 86 GPAPSPKDLDLGAQRERWETFRKLRGLSCEGAAKVLLDTFEYPGLVHHTGGCHCG 140
>gi|4826976 prenyl protein peptidase RCE1 isoform 1 [Homo sapiens]
Length = 329
Score = 27.3 bits (59), Expect = 4.9
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 24 LSVSRLQGPPDSQPLGTLGQG 44
LSVSR + PP+S LG LG G
Sbjct: 12 LSVSRPERPPESAALGGLGPG 32
>gi|14249534 hypothetical protein LOC84915 [Homo sapiens]
Length = 452
Score = 27.3 bits (59), Expect = 4.9
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 20 SLPRLSVSRLQGPPDSQPLGTLGQGGWKLLGIVGSLAPETLGGLGTEF 67
S P ++ S G PD + LGQG + L + G+ P G ++
Sbjct: 238 SFPSMAYSAAAGLPDCRKGTELGQGATQALTLAGAAKPAGYADSGLDY 285
>gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo
sapiens]
Length = 4911
Score = 26.9 bits (58), Expect = 6.4
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 12/79 (15%)
Query: 37 PLGTLGQGGWKLLGIVGSL-APETLGGLG-------TEFGPCTHPLPFDMVRERERDDEL 88
PL T+ +GGWK V T GL T+ PC + R+++L
Sbjct: 1040 PLQTVPKGGWKCKWCVWCRHCGATSAGLRCEWQNNYTQCAPCASLSSCPVCYRNYREEDL 1099
Query: 89 RQGWLLQCPQCARTLLCHC 107
+LQC QC R + C
Sbjct: 1100 ----ILQCRQCDRWMHAVC 1114
>gi|224451135 splicing factor, arginine/serine-rich 15 isoform 3
[Homo sapiens]
Length = 1125
Score = 26.9 bits (58), Expect = 6.4
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 19 TSLPRLSVSRLQGPPDSQPLGTLGQGGWKLLGIVGSLAPETLGGLGTEFG 68
+++P + + L PP +QP+ LG G ++G AP T G LG G
Sbjct: 785 SAVPPAAPTNLPTPPVTQPVSLLGTQGVAPGPVIGLQAPST-GLLGARPG 833
>gi|224451133 splicing factor, arginine/serine-rich 15 isoform 2
[Homo sapiens]
Length = 1132
Score = 26.9 bits (58), Expect = 6.4
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 19 TSLPRLSVSRLQGPPDSQPLGTLGQGGWKLLGIVGSLAPETLGGLGTEFG 68
+++P + + L PP +QP+ LG G ++G AP T G LG G
Sbjct: 792 SAVPPAAPTNLPTPPVTQPVSLLGTQGVAPGPVIGLQAPST-GLLGARPG 840
>gi|40789229 splicing factor, arginine/serine-rich 15 isoform 1
[Homo sapiens]
Length = 1147
Score = 26.9 bits (58), Expect = 6.4
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 19 TSLPRLSVSRLQGPPDSQPLGTLGQGGWKLLGIVGSLAPETLGGLGTEFG 68
+++P + + L PP +QP+ LG G ++G AP T G LG G
Sbjct: 807 SAVPPAAPTNLPTPPVTQPVSLLGTQGVAPGPVIGLQAPST-GLLGARPG 855
>gi|148664238 a disintegrin and metalloprotease domain 32 [Homo
sapiens]
Length = 787
Score = 26.9 bits (58), Expect = 6.4
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 105 CHCGPFLTPPS-QTSSSGFQLCSLKPSGSLV 134
CHC P PP+ Q S GF + + GS++
Sbjct: 642 CHCSPGYKPPNCQIRSKGFSIFPEEDMGSIM 672
>gi|44888818 DIP2 disco-interacting protein 2 homolog C [Homo
sapiens]
Length = 1556
Score = 26.6 bits (57), Expect = 8.3
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 19/86 (22%)
Query: 3 EALHQIVVRCSELVSSTSLPRLSVSRLQGPPDSQPLGTLGQGGWKLLGIVGSLAPETLGG 62
+++HQ+ V C LV + +LP+ PLG + K L + GSL P
Sbjct: 867 DSIHQVGVYCLALVPANTLPK------------TPLGGIHLSETKQLFLEGSLHP----- 909
Query: 63 LGTEFGPCTHPLPFDMVRERERDDEL 88
C H ++ + R++ E+
Sbjct: 910 --CNVLMCPHTCVTNLPKPRQKQPEI 933
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.137 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,978,050
Number of Sequences: 37866
Number of extensions: 343799
Number of successful extensions: 879
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 871
Number of HSP's gapped (non-prelim): 21
length of query: 149
length of database: 18,247,518
effective HSP length: 93
effective length of query: 56
effective length of database: 14,725,980
effective search space: 824654880
effective search space used: 824654880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.