Guide to the Human Genome
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Name: C6orf70 Sequence: fasta or formatted (678aa) NCBI GI: 62988331
Description:

hypothetical protein LOC55780

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         31           1
 C cysteine            3.1         21           1
 D aspartate           3.1         21           2
 E glutamate           7.7         52           2
 F phenylalanine       4.6         31           1
 G glycine             3.1         21           1
 H histidine           2.8         19           2
 I isoleucine          5.0         34           2
 K lysine              4.9         33           2
 L leucine            16.7        113           3
 M methionine          2.1         14           2
 N asparagine          3.8         26           1
 P proline             4.1         28           2
 Q glutamine           4.1         28           2
 R arginine            4.9         33           2
 S serine              8.3         56           2
 T threonine           5.9         40           2
 V valine              6.9         47           2
 W tryptophan          1.9         13           1
 Y tyrosine            2.5         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC55780 
VPS11                 0.006   vacuolar protein sorting 11 
ITPR2                 0.006   inositol 1,4,5-triphosphate receptor, type 2 
MFHAS1                0.005   malignant fibrous histiocytoma amplified sequence 1...
BTAF1                 0.005   BTAF1 RNA polymerase II, B-TFIID transcription facto...
SCN3B                 0.004   voltage-gated sodium channel beta-3 subunit precursor...
SCN3B                 0.004   voltage-gated sodium channel beta-3 subunit precurso...
SMC2                  0.004   structural maintenance of chromosomes 2 
SMC2                  0.004   structural maintenance of chromosomes 2 
SMC2                  0.004   structural maintenance of chromosomes 2 
TCP11L1               0.004   t-complex 11 (mouse) like 1 
TCP11L1               0.004   t-complex 11 (mouse) like 1 
LOC400987             0.004   PREDICTED: similar to UNCoordinated family member (...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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