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Search of human proteins with 62865635
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|62865635 squalene epoxidase [Homo sapiens]
(574 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|62865635 squalene epoxidase [Homo sapiens] 1142 0.0
gi|23821023 interleukin 4 induced 1 isoform 1 precursor [Homo sa... 38 0.029
gi|27477089 interleukin 4 induced 1 isoform 2 [Homo sapiens] 38 0.029
gi|187960045 kynurenine 3-monooxygenase [Homo sapiens] 37 0.049
gi|116256451 amine oxidase (flavin containing) domain 1 [Homo sa... 36 0.11
gi|203098013 all-trans-13,14-dihydroretinol saturase [Homo sapiens] 33 0.71
gi|91199540 dihydrolipoamide dehydrogenase precursor [Homo sapiens] 33 0.93
gi|226437568 apoptosis-inducing factor, mitochondrion-associated... 32 1.2
gi|65787454 apoptosis-inducing factor, mitochondrion-associated,... 32 1.2
gi|21389617 apoptosis-inducing factor, mitochondrion-associated,... 32 1.2
gi|65507253 hypothetical protein LOC55196 [Homo sapiens] 31 3.5
gi|170172518 microtubule associated monoxygenase, calponin and L... 30 4.6
gi|209862793 microtubule associated monoxygenase, calponin and L... 30 4.6
gi|209862789 microtubule associated monoxygenase, calponin and L... 30 4.6
gi|116284392 mucin 2 precursor [Homo sapiens] 30 6.0
gi|154813197 talpid3 protein [Homo sapiens] 30 6.0
gi|22035672 thioredoxin reductase 2 precursor [Homo sapiens] 30 7.9
gi|32967307 coenzyme Q6 homolog isoform b [Homo sapiens] 30 7.9
gi|32967305 coenzyme Q6 homolog isoform a [Homo sapiens] 30 7.9
>gi|62865635 squalene epoxidase [Homo sapiens]
Length = 574
Score = 1142 bits (2955), Expect = 0.0
Identities = 574/574 (100%), Positives = 574/574 (100%)
Query: 1 MWTFLGIATFTYFYKKFGDFITLANREVLLCVLVFLSLGLVLSYRCRHRNGGLLGRQQSG 60
MWTFLGIATFTYFYKKFGDFITLANREVLLCVLVFLSLGLVLSYRCRHRNGGLLGRQQSG
Sbjct: 1 MWTFLGIATFTYFYKKFGDFITLANREVLLCVLVFLSLGLVLSYRCRHRNGGLLGRQQSG 60
Query: 61 SQFALFSDILSGLPFIGFFWAKSPPESENKEQLEARRRRKGTNISETSLIGTAACTSTSS 120
SQFALFSDILSGLPFIGFFWAKSPPESENKEQLEARRRRKGTNISETSLIGTAACTSTSS
Sbjct: 61 SQFALFSDILSGLPFIGFFWAKSPPESENKEQLEARRRRKGTNISETSLIGTAACTSTSS 120
Query: 121 QNDPEVIIVGAGVLGSALAAVLSRDGRKVTVIERDLKEPDRIVGEFLQPGGYHVLKDLGL 180
QNDPEVIIVGAGVLGSALAAVLSRDGRKVTVIERDLKEPDRIVGEFLQPGGYHVLKDLGL
Sbjct: 121 QNDPEVIIVGAGVLGSALAAVLSRDGRKVTVIERDLKEPDRIVGEFLQPGGYHVLKDLGL 180
Query: 181 GDTVEGLDAQVVNGYMIHDQESKSEVQIPYPLSENNQVQSGRAFHHGRFIMSLRKAAMAE 240
GDTVEGLDAQVVNGYMIHDQESKSEVQIPYPLSENNQVQSGRAFHHGRFIMSLRKAAMAE
Sbjct: 181 GDTVEGLDAQVVNGYMIHDQESKSEVQIPYPLSENNQVQSGRAFHHGRFIMSLRKAAMAE 240
Query: 241 PNAKFIEGVVLQLLEEDDVVMGVQYKDKETGDIKELHAPLTVVADGLFSKFRKSLVSNKV 300
PNAKFIEGVVLQLLEEDDVVMGVQYKDKETGDIKELHAPLTVVADGLFSKFRKSLVSNKV
Sbjct: 241 PNAKFIEGVVLQLLEEDDVVMGVQYKDKETGDIKELHAPLTVVADGLFSKFRKSLVSNKV 300
Query: 301 SVSSHFVGFLMKNAPQFKANHAELILANPSPVLIYQISSSETRVLVDIRGEMPRNLREYM 360
SVSSHFVGFLMKNAPQFKANHAELILANPSPVLIYQISSSETRVLVDIRGEMPRNLREYM
Sbjct: 301 SVSSHFVGFLMKNAPQFKANHAELILANPSPVLIYQISSSETRVLVDIRGEMPRNLREYM 360
Query: 361 VEKIYPQIPDHLKEPFLEATDNSHLRSMPASFLPPSSVKKRGVLLLGDAYNMRHPLTGGG 420
VEKIYPQIPDHLKEPFLEATDNSHLRSMPASFLPPSSVKKRGVLLLGDAYNMRHPLTGGG
Sbjct: 361 VEKIYPQIPDHLKEPFLEATDNSHLRSMPASFLPPSSVKKRGVLLLGDAYNMRHPLTGGG 420
Query: 421 MTVAFKDIKLWRKLLKGIPDLYDDAAIFEAKKSFYWARKTSHSFVVNILAQALYELFSAT 480
MTVAFKDIKLWRKLLKGIPDLYDDAAIFEAKKSFYWARKTSHSFVVNILAQALYELFSAT
Sbjct: 421 MTVAFKDIKLWRKLLKGIPDLYDDAAIFEAKKSFYWARKTSHSFVVNILAQALYELFSAT 480
Query: 481 DDSLHQLRKACFLYFKLGGECVAGPVGLLSVLSPNPLVLIGHFFAVAIYAVYFCFKSEPW 540
DDSLHQLRKACFLYFKLGGECVAGPVGLLSVLSPNPLVLIGHFFAVAIYAVYFCFKSEPW
Sbjct: 481 DDSLHQLRKACFLYFKLGGECVAGPVGLLSVLSPNPLVLIGHFFAVAIYAVYFCFKSEPW 540
Query: 541 ITKPRALLSSGAVLYKACSVIFPLIYSEMKYMVH 574
ITKPRALLSSGAVLYKACSVIFPLIYSEMKYMVH
Sbjct: 541 ITKPRALLSSGAVLYKACSVIFPLIYSEMKYMVH 574
>gi|23821023 interleukin 4 induced 1 isoform 1 precursor [Homo
sapiens]
Length = 567
Score = 37.7 bits (86), Expect = 0.029
Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 15/71 (21%)
Query: 126 VIIVGAGVLGSALAAVLSRDGRKVTVIERDLKEPDRI-------------VGEFLQPGGY 172
VI+VGAGV G A VLS G KVT++E D + RI +G P +
Sbjct: 62 VIVVGAGVAGLVAAKVLSDAGHKVTILEADNRIGGRIFTYRDQNTGWIGELGAMRMPSSH 121
Query: 173 HVLKDL--GLG 181
+L L GLG
Sbjct: 122 RILHKLCQGLG 132
>gi|27477089 interleukin 4 induced 1 isoform 2 [Homo sapiens]
Length = 589
Score = 37.7 bits (86), Expect = 0.029
Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 15/71 (21%)
Query: 126 VIIVGAGVLGSALAAVLSRDGRKVTVIERDLKEPDRI-------------VGEFLQPGGY 172
VI+VGAGV G A VLS G KVT++E D + RI +G P +
Sbjct: 84 VIVVGAGVAGLVAAKVLSDAGHKVTILEADNRIGGRIFTYRDQNTGWIGELGAMRMPSSH 143
Query: 173 HVLKDL--GLG 181
+L L GLG
Sbjct: 144 RILHKLCQGLG 154
>gi|187960045 kynurenine 3-monooxygenase [Homo sapiens]
Length = 486
Score = 37.0 bits (84), Expect = 0.049
Identities = 78/336 (23%), Positives = 129/336 (38%), Gaps = 39/336 (11%)
Query: 125 EVIIVGAGVLGSALAAVLSRDGRKVTVIERDLKEPDRI--------VGEFLQPGGYHVLK 176
+V ++G G++GS A L++ ++ V E +E R+ + L G LK
Sbjct: 10 KVAVIGGGLVGSLQACFLAKRNFQIDVYE--AREDTRVATFTRGRSINLALSHRGRQALK 67
Query: 177 DLGLGDTV--EGLDAQVVNGYMIHDQESKSEVQIPYPLSENNQVQSGRAFHHGRFIMSLR 234
+GL D + +G+ + MIH K IPY + R L
Sbjct: 68 AVGLEDQIVSQGIP---MRARMIHSLSGKKSA-IPYGTKSQYILSVSRE----NLNKDLL 119
Query: 235 KAAMAEPNAKFIEGVVLQLLEEDDVVMGVQYKDKETGDIKELHAPLTVVADGLFSKFRKS 294
AA PN K L ++ ++ V DK K++ L V DG +S R
Sbjct: 120 TAAEKYPNVKMHFNHRLLKCNPEEGMITVLGSDKVP---KDVTCDLIVGCDGAYSTVRSH 176
Query: 295 LVSN-KVSVSSHFV--GFLMKNAP------QFKANHAELILANP-SPVLIYQISSSETRV 344
L+ + S ++ G++ P + N+ + N + + ++ S T
Sbjct: 177 LMKKPRFDYSQQYIPHGYMELTIPPKNGDYAMEPNYLHIWPRNTFMMIALPNMNKSFTCT 236
Query: 345 LVDIRGEMPRNLREYMV----EKIYPQIPDHLKEPFLEATDNSHLRSMPASFLPPSSVK- 399
L E + L V +K +P + E L D L + P + SS
Sbjct: 237 LFMPFEEFEKLLTSNDVVDFFQKYFPDAIPLIGEKLL-VQDFFLLPAQPMISVKCSSFHF 295
Query: 400 KRGVLLLGDAYNMRHPLTGGGMTVAFKDIKLWRKLL 435
K +LLGDA + P G GM F+D ++ +L+
Sbjct: 296 KSHCVLLGDAAHAIVPFFGQGMNAGFEDCLVFDELM 331
>gi|116256451 amine oxidase (flavin containing) domain 1 [Homo
sapiens]
Length = 590
Score = 35.8 bits (81), Expect = 0.11
Identities = 32/96 (33%), Positives = 39/96 (40%), Gaps = 12/96 (12%)
Query: 99 RKGTNISETSLIGTAACTSTSSQNDPEVIIVGAGVLGSALAAVLSRDGRKVTVIERDLKE 158
RKG + +G ++ VII+GAG G A A L G KVTV+E
Sbjct: 226 RKGLINTGVLSVGADQYLLPKDYHNKSVIIIGAGPAGLAAARQLHNFGIKVTVLE----A 281
Query: 159 PDRIVGEFLQPGGYHVLKDLGLGDTVEGLDAQVVNG 194
DRI G V D G AQ+VNG
Sbjct: 282 KDRI--------GGRVWDDKSFKGVTVGRGAQIVNG 309
>gi|203098013 all-trans-13,14-dihydroretinol saturase [Homo sapiens]
Length = 610
Score = 33.1 bits (74), Expect = 0.71
Identities = 13/33 (39%), Positives = 25/33 (75%)
Query: 125 EVIIVGAGVLGSALAAVLSRDGRKVTVIERDLK 157
+V+++G+G G A AA+L++ G++V V+E+ K
Sbjct: 69 DVVVIGSGFGGLAAAAILAKAGKRVLVLEQHTK 101
>gi|91199540 dihydrolipoamide dehydrogenase precursor [Homo sapiens]
Length = 509
Score = 32.7 bits (73), Expect = 0.93
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 101 GTNISETSLIGTAACTSTSSQNDPEVIIVGAGVLGSALAAVLSRDGRKVTVIE 153
G I E +++ + S + +++++GAGV+G L +V R G VT +E
Sbjct: 192 GITIDEDTIVSSTGALSLKKVPE-KMVVIGAGVIGVELGSVWQRLGADVTAVE 243
>gi|226437568 apoptosis-inducing factor, mitochondrion-associated, 3
isoform 3 [Homo sapiens]
Length = 604
Score = 32.3 bits (72), Expect = 1.2
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 126 VIIVGAGVLGSALAAVLSRDGRKVTVIERDLKEPDRIVGE 165
V++VGAG LG +AA L+ V+V+E + R +GE
Sbjct: 341 VVVVGAGFLGMEVAAYLTEKAHSVSVVELEETPFRRFLGE 380
>gi|65787454 apoptosis-inducing factor, mitochondrion-associated, 3
isoform 2 [Homo sapiens]
Length = 598
Score = 32.3 bits (72), Expect = 1.2
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 126 VIIVGAGVLGSALAAVLSRDGRKVTVIERDLKEPDRIVGE 165
V++VGAG LG +AA L+ V+V+E + R +GE
Sbjct: 335 VVVVGAGFLGMEVAAYLTEKAHSVSVVELEETPFRRFLGE 374
>gi|21389617 apoptosis-inducing factor, mitochondrion-associated, 3
isoform 1 [Homo sapiens]
Length = 605
Score = 32.3 bits (72), Expect = 1.2
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 126 VIIVGAGVLGSALAAVLSRDGRKVTVIERDLKEPDRIVGE 165
V++VGAG LG +AA L+ V+V+E + R +GE
Sbjct: 335 VVVVGAGFLGMEVAAYLTEKAHSVSVVELEETPFRRFLGE 374
>gi|65507253 hypothetical protein LOC55196 [Homo sapiens]
Length = 1747
Score = 30.8 bits (68), Expect = 3.5
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
Query: 287 LFSKFRKSLVSNKVSVSSHFVGFLMKNAPQFKANHAELILANPSPVLIYQISSSETRVLV 346
L S R + S+ + SH F N P A ++LI ++ + + I S+ TR+ V
Sbjct: 120 LNSPMRNPVHSHIGATVSHQTDF-GANVPNMPALQSQLITSDTYSMQMQMIPSNSTRLPV 178
Query: 347 DIRGE--MPRNLREYMVEKIYPQIPDHLKEPFLEATDNSHLRSMPASFLPPSSVKKRGVL 404
+G + ++ E V+ I L P + R P SFLP S+++K+ +
Sbjct: 179 AYQGNQGLNQSFSEQQVDWTQQCISKGLTYPDYRPPPKLY-RYSPQSFLPDSTIQKQNFI 237
>gi|170172518 microtubule associated monoxygenase, calponin and LIM
domain containing 3 isoform 3 [Homo sapiens]
Length = 966
Score = 30.4 bits (67), Expect = 4.6
Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 114 ACTSTSSQNDPEVIIVGAGVLGSALAAVLSRDGRKVTVIE-RDLKEPDRIVGEFLQPGGY 172
ACT+T + +I+GAG G A LS G KV VIE RD + ++ L P
Sbjct: 83 ACTNT------KCLIIGAGPCGLRTAIDLSLLGAKVVVIEKRDAFSRNNVL--HLWPFTI 134
Query: 173 HVLKDLG 179
H L+ LG
Sbjct: 135 HDLRGLG 141
>gi|209862793 microtubule associated monoxygenase, calponin and LIM
domain containing 3 isoform 2 [Homo sapiens]
Length = 1073
Score = 30.4 bits (67), Expect = 4.6
Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 114 ACTSTSSQNDPEVIIVGAGVLGSALAAVLSRDGRKVTVIE-RDLKEPDRIVGEFLQPGGY 172
ACT+T + +I+GAG G A LS G KV VIE RD + ++ L P
Sbjct: 83 ACTNT------KCLIIGAGPCGLRTAIDLSLLGAKVVVIEKRDAFSRNNVL--HLWPFTI 134
Query: 173 HVLKDLG 179
H L+ LG
Sbjct: 135 HDLRGLG 141
>gi|209862789 microtubule associated monoxygenase, calponin and LIM
domain containing 3 isoform 1 [Homo sapiens]
Length = 2002
Score = 30.4 bits (67), Expect = 4.6
Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 114 ACTSTSSQNDPEVIIVGAGVLGSALAAVLSRDGRKVTVIE-RDLKEPDRIVGEFLQPGGY 172
ACT+T + +I+GAG G A LS G KV VIE RD + ++ L P
Sbjct: 83 ACTNT------KCLIIGAGPCGLRTAIDLSLLGAKVVVIEKRDAFSRNNVL--HLWPFTI 134
Query: 173 HVLKDLG 179
H L+ LG
Sbjct: 135 HDLRGLG 141
>gi|116284392 mucin 2 precursor [Homo sapiens]
Length = 5179
Score = 30.0 bits (66), Expect = 6.0
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 7/111 (6%)
Query: 100 KGTNISETSLIGTAA-CTSTSSQNDPEVIIVGAGVLGSALAAVLSRDGRKVTVIERDLKE 158
KG + +L+G A C ST Q + +++ A + + V DG V + E +
Sbjct: 419 KGDHNDSYALLGELAPCGSTDKQTCLKTVVLLADKKKNVV--VFKSDG-SVLLNELQVNL 475
Query: 159 PDRIVGEF--LQPGGYHVLKDLGLGDTVEGLDAQVVNGYMIHDQESKSEVQ 207
P + F +P YH++ + +G ++ A V+ ++ DQ S+ +VQ
Sbjct: 476 P-HVTASFSVFRPSSYHIMVSMAIGVRLQVQLAPVMQLFVTLDQASQGQVQ 525
>gi|154813197 talpid3 protein [Homo sapiens]
Length = 1472
Score = 30.0 bits (66), Expect = 6.0
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 15/83 (18%)
Query: 209 PYPLSENNQVQSGRAFH-----HGRFIMSLRKAAMAEPNAKFIEGVVLQLLEEDDVVMGV 263
P PLS SG + HG MSL + + EPN+K + L +E+DV + V
Sbjct: 1302 PKPLSRQFDTVSGSIYEDSCASHGP--MSLGELEL-EPNSKLVLPTTLLTAQENDVNLPV 1358
Query: 264 ------QYKDKETGDIKEL-HAP 279
QY+ K+ D+K++ H P
Sbjct: 1359 AAEDFSQYQLKQNQDVKQVEHKP 1381
>gi|22035672 thioredoxin reductase 2 precursor [Homo sapiens]
Length = 524
Score = 29.6 bits (65), Expect = 7.9
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 113 AACTSTSSQNDPEVIIVGAGVLGSALAAVLSRDGRKVTVIE 153
AA + + Q D ++++VG G G A A ++ GRKV V++
Sbjct: 29 AARGAAAGQRDYDLLVVGGGSGGLACAKEAAQLGRKVAVVD 69
>gi|32967307 coenzyme Q6 homolog isoform b [Homo sapiens]
Length = 393
Score = 29.6 bits (65), Expect = 7.9
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 403 VLLLGDAYNMRHPLTGGGMTVAFKDI 428
V L+GDA + HPL G G+ + F DI
Sbjct: 286 VALIGDAAHRVHPLAGQGVNMGFGDI 311
>gi|32967305 coenzyme Q6 homolog isoform a [Homo sapiens]
Length = 468
Score = 29.6 bits (65), Expect = 7.9
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 403 VLLLGDAYNMRHPLTGGGMTVAFKDI 428
V L+GDA + HPL G G+ + F DI
Sbjct: 361 VALIGDAAHRVHPLAGQGVNMGFGDI 386
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.138 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,331,970
Number of Sequences: 37866
Number of extensions: 937938
Number of successful extensions: 2108
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2093
Number of HSP's gapped (non-prelim): 23
length of query: 574
length of database: 18,247,518
effective HSP length: 108
effective length of query: 466
effective length of database: 14,157,990
effective search space: 6597623340
effective search space used: 6597623340
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.