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Search of human proteins with 58761520
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|58761520 coiled-coil-helix-coiled-coil-helix domain
containing 7 isoform f [Homo sapiens]
(85 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|58761520 coiled-coil-helix-coiled-coil-helix domain containin... 182 4e-47
gi|58761514 coiled-coil-helix-coiled-coil-helix domain containin... 182 4e-47
gi|64464338 coiled-coil-helix-coiled-coil-helix domain containin... 182 4e-47
gi|58761518 coiled-coil-helix-coiled-coil-helix domain containin... 42 1e-04
gi|58761516 coiled-coil-helix-coiled-coil-helix domain containin... 42 1e-04
gi|58761512 coiled-coil-helix-coiled-coil-helix domain containin... 42 1e-04
gi|66346713 mature T-cell proliferation 1 neighbor [Homo sapiens] 27 3.5
gi|55769561 zinc finger protein 21 isoform 2 [Homo sapiens] 27 4.5
gi|55769559 zinc finger protein 21 isoform 1 [Homo sapiens] 27 4.5
gi|54234040 vacuolar protein sorting 54 isoform 2 [Homo sapiens] 26 7.7
gi|54234034 vacuolar protein sorting 54 isoform 1 [Homo sapiens] 26 7.7
gi|71979925 COX19 cytochrome c oxidase assembly homolog [Homo sa... 26 7.7
gi|85861243 tocopherol (alpha) transfer protein-like [Homo sapiens] 26 7.7
gi|85861250 tocopherol (alpha) transfer protein-like [Homo sapiens] 26 7.7
>gi|58761520 coiled-coil-helix-coiled-coil-helix domain containing
7 isoform f [Homo sapiens]
Length = 85
Score = 182 bits (463), Expect = 4e-47
Identities = 85/85 (100%), Positives = 85/85 (100%)
Query: 1 MPSVTQRLRDPDINPCLSESDASTRCLDENNYDRERCSTYFLRYKNCRRFWNSIVMQRRK 60
MPSVTQRLRDPDINPCLSESDASTRCLDENNYDRERCSTYFLRYKNCRRFWNSIVMQRRK
Sbjct: 1 MPSVTQRLRDPDINPCLSESDASTRCLDENNYDRERCSTYFLRYKNCRRFWNSIVMQRRK 60
Query: 61 NGVKPFMPTAAERDEILRAVGNMPY 85
NGVKPFMPTAAERDEILRAVGNMPY
Sbjct: 61 NGVKPFMPTAAERDEILRAVGNMPY 85
>gi|58761514 coiled-coil-helix-coiled-coil-helix domain containing 7
isoform b [Homo sapiens]
Length = 110
Score = 182 bits (463), Expect = 4e-47
Identities = 85/85 (100%), Positives = 85/85 (100%)
Query: 1 MPSVTQRLRDPDINPCLSESDASTRCLDENNYDRERCSTYFLRYKNCRRFWNSIVMQRRK 60
MPSVTQRLRDPDINPCLSESDASTRCLDENNYDRERCSTYFLRYKNCRRFWNSIVMQRRK
Sbjct: 26 MPSVTQRLRDPDINPCLSESDASTRCLDENNYDRERCSTYFLRYKNCRRFWNSIVMQRRK 85
Query: 61 NGVKPFMPTAAERDEILRAVGNMPY 85
NGVKPFMPTAAERDEILRAVGNMPY
Sbjct: 86 NGVKPFMPTAAERDEILRAVGNMPY 110
>gi|64464338 coiled-coil-helix-coiled-coil-helix domain containing
7 isoform d [Homo sapiens]
Length = 97
Score = 182 bits (463), Expect = 4e-47
Identities = 85/85 (100%), Positives = 85/85 (100%)
Query: 1 MPSVTQRLRDPDINPCLSESDASTRCLDENNYDRERCSTYFLRYKNCRRFWNSIVMQRRK 60
MPSVTQRLRDPDINPCLSESDASTRCLDENNYDRERCSTYFLRYKNCRRFWNSIVMQRRK
Sbjct: 13 MPSVTQRLRDPDINPCLSESDASTRCLDENNYDRERCSTYFLRYKNCRRFWNSIVMQRRK 72
Query: 61 NGVKPFMPTAAERDEILRAVGNMPY 85
NGVKPFMPTAAERDEILRAVGNMPY
Sbjct: 73 NGVKPFMPTAAERDEILRAVGNMPY 97
>gi|58761518 coiled-coil-helix-coiled-coil-helix domain containing
7 isoform e [Homo sapiens]
Length = 56
Score = 42.0 bits (97), Expect = 1e-04
Identities = 18/18 (100%), Positives = 18/18 (100%)
Query: 1 MPSVTQRLRDPDINPCLS 18
MPSVTQRLRDPDINPCLS
Sbjct: 1 MPSVTQRLRDPDINPCLS 18
>gi|58761516 coiled-coil-helix-coiled-coil-helix domain containing
7 isoform c [Homo sapiens]
Length = 68
Score = 42.0 bits (97), Expect = 1e-04
Identities = 18/18 (100%), Positives = 18/18 (100%)
Query: 1 MPSVTQRLRDPDINPCLS 18
MPSVTQRLRDPDINPCLS
Sbjct: 13 MPSVTQRLRDPDINPCLS 30
>gi|58761512 coiled-coil-helix-coiled-coil-helix domain containing
7 isoform a [Homo sapiens]
Length = 81
Score = 42.0 bits (97), Expect = 1e-04
Identities = 18/18 (100%), Positives = 18/18 (100%)
Query: 1 MPSVTQRLRDPDINPCLS 18
MPSVTQRLRDPDINPCLS
Sbjct: 26 MPSVTQRLRDPDINPCLS 43
>gi|66346713 mature T-cell proliferation 1 neighbor [Homo sapiens]
Length = 68
Score = 26.9 bits (58), Expect = 3.5
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 11 PDINPCLSESDASTRCLDENNYDRERCSTYFLRYKNC 47
P +PC ++ +CL N+Y +C + C
Sbjct: 2 PQKDPCQKQACEIQKCLQANSYMESKCQAVIQELRKC 38
>gi|55769561 zinc finger protein 21 isoform 2 [Homo sapiens]
Length = 620
Score = 26.6 bits (57), Expect = 4.5
Identities = 23/77 (29%), Positives = 28/77 (36%), Gaps = 17/77 (22%)
Query: 14 NPCLSESDASTRCLDENNYDRERCSTYF-------------LRYKNC----RRFWNSIVM 56
N + D +R EN YD +F YK C RR +
Sbjct: 146 NNMVDNLDLFSRSSAENKYDNGCAKLFFHTEYEKTNPGMKPYGYKECGKGLRRKKGLSLH 205
Query: 57 QRRKNGVKPFMPTAAER 73
QR KNG KPF TA +
Sbjct: 206 QRIKNGEKPFECTACRK 222
>gi|55769559 zinc finger protein 21 isoform 1 [Homo sapiens]
Length = 639
Score = 26.6 bits (57), Expect = 4.5
Identities = 23/77 (29%), Positives = 28/77 (36%), Gaps = 17/77 (22%)
Query: 14 NPCLSESDASTRCLDENNYDRERCSTYF-------------LRYKNC----RRFWNSIVM 56
N + D +R EN YD +F YK C RR +
Sbjct: 165 NNMVDNLDLFSRSSAENKYDNGCAKLFFHTEYEKTNPGMKPYGYKECGKGLRRKKGLSLH 224
Query: 57 QRRKNGVKPFMPTAAER 73
QR KNG KPF TA +
Sbjct: 225 QRIKNGEKPFECTACRK 241
>gi|54234040 vacuolar protein sorting 54 isoform 2 [Homo sapiens]
Length = 965
Score = 25.8 bits (55), Expect = 7.7
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 3 SVTQRLRDPDINPCLSESDASTRCLDENNYDRERCST 39
+ +QR P+ PC S+S + C +++ +E S+
Sbjct: 522 TTSQRNASPNSEPCSSDSVSEPECTTDSSSSKEHTSS 558
>gi|54234034 vacuolar protein sorting 54 isoform 1 [Homo sapiens]
Length = 977
Score = 25.8 bits (55), Expect = 7.7
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 3 SVTQRLRDPDINPCLSESDASTRCLDENNYDRERCST 39
+ +QR P+ PC S+S + C +++ +E S+
Sbjct: 534 TTSQRNASPNSEPCSSDSVSEPECTTDSSSSKEHTSS 570
>gi|71979925 COX19 cytochrome c oxidase assembly homolog [Homo
sapiens]
Length = 90
Score = 25.8 bits (55), Expect = 7.7
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 13 INPCLSESDASTRCLDENNYDRERCSTYFLRYKNCR 48
+ C S + +CL NN++ C Y CR
Sbjct: 27 LGECKSFKEKFMKCLHNNNFENALCRKESKEYLECR 62
>gi|85861243 tocopherol (alpha) transfer protein-like [Homo sapiens]
Length = 342
Score = 25.8 bits (55), Expect = 7.7
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 6 QRLRD------PDINPCLSESDASTRCLDENNYDRERCSTYFLRYKNCRRFWNSIVMQRR 59
Q LRD P+++ L ++ R L +D +R + Y +CRR W + +
Sbjct: 59 QALRDMVRKEYPNLSTSLDDAFL-LRFLRARKFDYDRALQLLVNYHSCRRSWPEVFNNLK 117
Query: 60 KNGVK 64
+ +K
Sbjct: 118 PSALK 122
>gi|85861250 tocopherol (alpha) transfer protein-like [Homo sapiens]
Length = 342
Score = 25.8 bits (55), Expect = 7.7
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 6 QRLRD------PDINPCLSESDASTRCLDENNYDRERCSTYFLRYKNCRRFWNSIVMQRR 59
Q LRD P+++ L ++ R L +D +R + Y +CRR W + +
Sbjct: 59 QALRDMVRKEYPNLSTSLDDAFL-LRFLRARKFDYDRALQLLVNYHSCRRSWPEVFNNLK 117
Query: 60 KNGVK 64
+ +K
Sbjct: 118 PSALK 122
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.135 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,252,605
Number of Sequences: 37866
Number of extensions: 114761
Number of successful extensions: 285
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 275
Number of HSP's gapped (non-prelim): 14
length of query: 85
length of database: 18,247,518
effective HSP length: 57
effective length of query: 28
effective length of database: 16,089,156
effective search space: 450496368
effective search space used: 450496368
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.