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Search of human proteins with 58761514
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|58761514 coiled-coil-helix-coiled-coil-helix domain
containing 7 isoform b [Homo sapiens]
(110 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|58761514 coiled-coil-helix-coiled-coil-helix domain containin... 236 3e-63
gi|64464338 coiled-coil-helix-coiled-coil-helix domain containin... 192 6e-50
gi|58761520 coiled-coil-helix-coiled-coil-helix domain containin... 182 4e-47
gi|58761512 coiled-coil-helix-coiled-coil-helix domain containin... 96 8e-21
gi|58761516 coiled-coil-helix-coiled-coil-helix domain containin... 51 2e-07
gi|58761518 coiled-coil-helix-coiled-coil-helix domain containin... 42 1e-04
gi|66346713 mature T-cell proliferation 1 neighbor [Homo sapiens] 27 3.5
gi|42558252 coiled-coil-helix-coiled-coil-helix domain containin... 27 4.6
gi|54234040 vacuolar protein sorting 54 isoform 2 [Homo sapiens] 27 4.6
gi|54234034 vacuolar protein sorting 54 isoform 1 [Homo sapiens] 27 4.6
gi|55769561 zinc finger protein 21 isoform 2 [Homo sapiens] 27 4.6
gi|55769559 zinc finger protein 21 isoform 1 [Homo sapiens] 27 4.6
gi|71979925 COX19 cytochrome c oxidase assembly homolog [Homo sa... 26 7.8
gi|85861243 tocopherol (alpha) transfer protein-like [Homo sapiens] 26 7.8
gi|85861250 tocopherol (alpha) transfer protein-like [Homo sapiens] 26 7.8
>gi|58761514 coiled-coil-helix-coiled-coil-helix domain containing 7
isoform b [Homo sapiens]
Length = 110
Score = 236 bits (602), Expect = 3e-63
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MKCEETHAPNSNWVYVMLPSKKTVRMPSVTQRLRDPDINPCLSESDASTRCLDENNYDRE 60
MKCEETHAPNSNWVYVMLPSKKTVRMPSVTQRLRDPDINPCLSESDASTRCLDENNYDRE
Sbjct: 1 MKCEETHAPNSNWVYVMLPSKKTVRMPSVTQRLRDPDINPCLSESDASTRCLDENNYDRE 60
Query: 61 RCSTYFLRYKNCRRFWNSIVMQRRKNGVKPFMPTAAERDEILRAVGNMPY 110
RCSTYFLRYKNCRRFWNSIVMQRRKNGVKPFMPTAAERDEILRAVGNMPY
Sbjct: 61 RCSTYFLRYKNCRRFWNSIVMQRRKNGVKPFMPTAAERDEILRAVGNMPY 110
>gi|64464338 coiled-coil-helix-coiled-coil-helix domain containing 7
isoform d [Homo sapiens]
Length = 97
Score = 192 bits (487), Expect = 6e-50
Identities = 90/90 (100%), Positives = 90/90 (100%)
Query: 21 KKTVRMPSVTQRLRDPDINPCLSESDASTRCLDENNYDRERCSTYFLRYKNCRRFWNSIV 80
KKTVRMPSVTQRLRDPDINPCLSESDASTRCLDENNYDRERCSTYFLRYKNCRRFWNSIV
Sbjct: 8 KKTVRMPSVTQRLRDPDINPCLSESDASTRCLDENNYDRERCSTYFLRYKNCRRFWNSIV 67
Query: 81 MQRRKNGVKPFMPTAAERDEILRAVGNMPY 110
MQRRKNGVKPFMPTAAERDEILRAVGNMPY
Sbjct: 68 MQRRKNGVKPFMPTAAERDEILRAVGNMPY 97
>gi|58761520 coiled-coil-helix-coiled-coil-helix domain containing 7
isoform f [Homo sapiens]
Length = 85
Score = 182 bits (463), Expect = 4e-47
Identities = 85/85 (100%), Positives = 85/85 (100%)
Query: 26 MPSVTQRLRDPDINPCLSESDASTRCLDENNYDRERCSTYFLRYKNCRRFWNSIVMQRRK 85
MPSVTQRLRDPDINPCLSESDASTRCLDENNYDRERCSTYFLRYKNCRRFWNSIVMQRRK
Sbjct: 1 MPSVTQRLRDPDINPCLSESDASTRCLDENNYDRERCSTYFLRYKNCRRFWNSIVMQRRK 60
Query: 86 NGVKPFMPTAAERDEILRAVGNMPY 110
NGVKPFMPTAAERDEILRAVGNMPY
Sbjct: 61 NGVKPFMPTAAERDEILRAVGNMPY 85
>gi|58761512 coiled-coil-helix-coiled-coil-helix domain containing
7 isoform a [Homo sapiens]
Length = 81
Score = 95.5 bits (236), Expect = 8e-21
Identities = 43/43 (100%), Positives = 43/43 (100%)
Query: 1 MKCEETHAPNSNWVYVMLPSKKTVRMPSVTQRLRDPDINPCLS 43
MKCEETHAPNSNWVYVMLPSKKTVRMPSVTQRLRDPDINPCLS
Sbjct: 1 MKCEETHAPNSNWVYVMLPSKKTVRMPSVTQRLRDPDINPCLS 43
>gi|58761516 coiled-coil-helix-coiled-coil-helix domain containing
7 isoform c [Homo sapiens]
Length = 68
Score = 51.2 bits (121), Expect = 2e-07
Identities = 23/23 (100%), Positives = 23/23 (100%)
Query: 21 KKTVRMPSVTQRLRDPDINPCLS 43
KKTVRMPSVTQRLRDPDINPCLS
Sbjct: 8 KKTVRMPSVTQRLRDPDINPCLS 30
>gi|58761518 coiled-coil-helix-coiled-coil-helix domain containing
7 isoform e [Homo sapiens]
Length = 56
Score = 42.0 bits (97), Expect = 1e-04
Identities = 18/18 (100%), Positives = 18/18 (100%)
Query: 26 MPSVTQRLRDPDINPCLS 43
MPSVTQRLRDPDINPCLS
Sbjct: 1 MPSVTQRLRDPDINPCLS 18
>gi|66346713 mature T-cell proliferation 1 neighbor [Homo sapiens]
Length = 68
Score = 26.9 bits (58), Expect = 3.5
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 36 PDINPCLSESDASTRCLDENNYDRERCSTYFLRYKNC 72
P +PC ++ +CL N+Y +C + C
Sbjct: 2 PQKDPCQKQACEIQKCLQANSYMESKCQAVIQELRKC 38
>gi|42558252 coiled-coil-helix-coiled-coil-helix domain containing
1 [Homo sapiens]
Length = 118
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/57 (21%), Positives = 24/57 (42%)
Query: 16 VMLPSKKTVRMPSVTQRLRDPDINPCLSESDASTRCLDENNYDRERCSTYFLRYKNC 72
V+ P+K + V +R R+ C++E C +N + + C + +C
Sbjct: 20 VLKPNKPLILANRVGERRREKGEATCITEMSVMMACWKQNEFRDDACRKEIQGFLDC 76
>gi|54234040 vacuolar protein sorting 54 isoform 2 [Homo sapiens]
Length = 965
Score = 26.6 bits (57), Expect = 4.6
Identities = 10/41 (24%), Positives = 22/41 (53%)
Query: 24 VRMPSVTQRLRDPDINPCLSESDASTRCLDENNYDRERCST 64
+ + + +QR P+ PC S+S + C +++ +E S+
Sbjct: 518 IAVDTTSQRNASPNSEPCSSDSVSEPECTTDSSSSKEHTSS 558
>gi|54234034 vacuolar protein sorting 54 isoform 1 [Homo sapiens]
Length = 977
Score = 26.6 bits (57), Expect = 4.6
Identities = 10/41 (24%), Positives = 22/41 (53%)
Query: 24 VRMPSVTQRLRDPDINPCLSESDASTRCLDENNYDRERCST 64
+ + + +QR P+ PC S+S + C +++ +E S+
Sbjct: 530 IAVDTTSQRNASPNSEPCSSDSVSEPECTTDSSSSKEHTSS 570
>gi|55769561 zinc finger protein 21 isoform 2 [Homo sapiens]
Length = 620
Score = 26.6 bits (57), Expect = 4.6
Identities = 23/77 (29%), Positives = 28/77 (36%), Gaps = 17/77 (22%)
Query: 39 NPCLSESDASTRCLDENNYDRERCSTYF-------------LRYKNC----RRFWNSIVM 81
N + D +R EN YD +F YK C RR +
Sbjct: 146 NNMVDNLDLFSRSSAENKYDNGCAKLFFHTEYEKTNPGMKPYGYKECGKGLRRKKGLSLH 205
Query: 82 QRRKNGVKPFMPTAAER 98
QR KNG KPF TA +
Sbjct: 206 QRIKNGEKPFECTACRK 222
>gi|55769559 zinc finger protein 21 isoform 1 [Homo sapiens]
Length = 639
Score = 26.6 bits (57), Expect = 4.6
Identities = 23/77 (29%), Positives = 28/77 (36%), Gaps = 17/77 (22%)
Query: 39 NPCLSESDASTRCLDENNYDRERCSTYF-------------LRYKNC----RRFWNSIVM 81
N + D +R EN YD +F YK C RR +
Sbjct: 165 NNMVDNLDLFSRSSAENKYDNGCAKLFFHTEYEKTNPGMKPYGYKECGKGLRRKKGLSLH 224
Query: 82 QRRKNGVKPFMPTAAER 98
QR KNG KPF TA +
Sbjct: 225 QRIKNGEKPFECTACRK 241
>gi|71979925 COX19 cytochrome c oxidase assembly homolog [Homo
sapiens]
Length = 90
Score = 25.8 bits (55), Expect = 7.8
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 38 INPCLSESDASTRCLDENNYDRERCSTYFLRYKNCR 73
+ C S + +CL NN++ C Y CR
Sbjct: 27 LGECKSFKEKFMKCLHNNNFENALCRKESKEYLECR 62
>gi|85861243 tocopherol (alpha) transfer protein-like [Homo sapiens]
Length = 342
Score = 25.8 bits (55), Expect = 7.8
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 31 QRLRD------PDINPCLSESDASTRCLDENNYDRERCSTYFLRYKNCRRFWNSIVMQRR 84
Q LRD P+++ L ++ R L +D +R + Y +CRR W + +
Sbjct: 59 QALRDMVRKEYPNLSTSLDDAFL-LRFLRARKFDYDRALQLLVNYHSCRRSWPEVFNNLK 117
Query: 85 KNGVK 89
+ +K
Sbjct: 118 PSALK 122
>gi|85861250 tocopherol (alpha) transfer protein-like [Homo sapiens]
Length = 342
Score = 25.8 bits (55), Expect = 7.8
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 31 QRLRD------PDINPCLSESDASTRCLDENNYDRERCSTYFLRYKNCRRFWNSIVMQRR 84
Q LRD P+++ L ++ R L +D +R + Y +CRR W + +
Sbjct: 59 QALRDMVRKEYPNLSTSLDDAFL-LRFLRARKFDYDRALQLLVNYHSCRRSWPEVFNNLK 117
Query: 85 KNGVK 89
+ +K
Sbjct: 118 PSALK 122
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.132 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,445,537
Number of Sequences: 37866
Number of extensions: 169801
Number of successful extensions: 377
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 366
Number of HSP's gapped (non-prelim): 15
length of query: 110
length of database: 18,247,518
effective HSP length: 80
effective length of query: 30
effective length of database: 15,218,238
effective search space: 456547140
effective search space used: 456547140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.