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Search of human proteins with 58331262
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|58331262 zinc finger protein 655 isoform c [Homo sapiens]
(110 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|145701017 zinc finger protein 655 isoform c [Homo sapiens] 224 1e-59
gi|58331262 zinc finger protein 655 isoform c [Homo sapiens] 224 1e-59
gi|145701019 zinc finger protein 655 isoform b [Homo sapiens] 135 7e-33
gi|13129036 zinc finger protein 655 isoform b [Homo sapiens] 135 7e-33
gi|145701015 zinc finger protein 655 isoform f [Homo sapiens] 97 3e-21
gi|145701021 zinc finger protein 655 isoform f [Homo sapiens] 97 3e-21
gi|28416427 zinc finger protein 655 isoform a [Homo sapiens] 94 3e-20
gi|58331264 zinc finger protein 655 isoform a [Homo sapiens] 94 3e-20
gi|46195755 SCAN domain containing 3 [Homo sapiens] 34 0.022
gi|28558973 mediator complex subunit 14 [Homo sapiens] 29 0.71
gi|208431781 cyclic nucleotide gated channel beta 1 isoform b [H... 29 0.93
gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [H... 29 0.93
gi|157266300 membrane alanine aminopeptidase precursor [Homo sap... 28 1.2
gi|11545918 tubulointerstitial nephritis antigen-like 1 [Homo sa... 28 1.6
gi|31543179 hypothetical protein LOC78995 [Homo sapiens] 27 2.7
gi|17158025 RNA pseudouridylate synthase domain containing 1 [Ho... 27 2.7
gi|16933542 fibronectin 1 isoform 3 preproprotein [Homo sapiens] 27 4.6
gi|47132557 fibronectin 1 isoform 1 preproprotein [Homo sapiens] 27 4.6
gi|47132555 fibronectin 1 isoform 4 preproprotein [Homo sapiens] 27 4.6
gi|47132551 fibronectin 1 isoform 2 preproprotein [Homo sapiens] 27 4.6
gi|91992162 mutL homolog 3 isoform 1 [Homo sapiens] 27 4.6
gi|91992160 mutL homolog 3 isoform 2 [Homo sapiens] 27 4.6
gi|239746628 PREDICTED: hypothetical protein XP_002344230 [Homo ... 26 7.8
gi|239744133 PREDICTED: hypothetical protein [Homo sapiens] 26 7.8
gi|167614488 TBC1 domain family, member 10B [Homo sapiens] 26 7.8
>gi|145701017 zinc finger protein 655 isoform c [Homo sapiens]
Length = 110
Score = 224 bits (571), Expect = 1e-59
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTGGILLRLPTTRIHSVN 60
MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTGGILLRLPTTRIHSVN
Sbjct: 1 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTGGILLRLPTTRIHSVN 60
Query: 61 SCPALSHTQASAFSGETLAVLTAGISKRWPKYRLPIDIARPCSETPFPRL 110
SCPALSHTQASAFSGETLAVLTAGISKRWPKYRLPIDIARPCSETPFPRL
Sbjct: 61 SCPALSHTQASAFSGETLAVLTAGISKRWPKYRLPIDIARPCSETPFPRL 110
>gi|58331262 zinc finger protein 655 isoform c [Homo sapiens]
Length = 110
Score = 224 bits (571), Expect = 1e-59
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTGGILLRLPTTRIHSVN 60
MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTGGILLRLPTTRIHSVN
Sbjct: 1 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTGGILLRLPTTRIHSVN 60
Query: 61 SCPALSHTQASAFSGETLAVLTAGISKRWPKYRLPIDIARPCSETPFPRL 110
SCPALSHTQASAFSGETLAVLTAGISKRWPKYRLPIDIARPCSETPFPRL
Sbjct: 61 SCPALSHTQASAFSGETLAVLTAGISKRWPKYRLPIDIARPCSETPFPRL 110
>gi|145701019 zinc finger protein 655 isoform b [Homo sapiens]
Length = 181
Score = 135 bits (340), Expect = 7e-33
Identities = 65/65 (100%), Positives = 65/65 (100%)
Query: 46 GILLRLPTTRIHSVNSCPALSHTQASAFSGETLAVLTAGISKRWPKYRLPIDIARPCSET 105
GILLRLPTTRIHSVNSCPALSHTQASAFSGETLAVLTAGISKRWPKYRLPIDIARPCSET
Sbjct: 117 GILLRLPTTRIHSVNSCPALSHTQASAFSGETLAVLTAGISKRWPKYRLPIDIARPCSET 176
Query: 106 PFPRL 110
PFPRL
Sbjct: 177 PFPRL 181
Score = 93.6 bits (231), Expect = 3e-20
Identities = 45/45 (100%), Positives = 45/45 (100%)
Query: 1 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTG 45
MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTG
Sbjct: 1 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTG 45
>gi|13129036 zinc finger protein 655 isoform b [Homo sapiens]
Length = 181
Score = 135 bits (340), Expect = 7e-33
Identities = 65/65 (100%), Positives = 65/65 (100%)
Query: 46 GILLRLPTTRIHSVNSCPALSHTQASAFSGETLAVLTAGISKRWPKYRLPIDIARPCSET 105
GILLRLPTTRIHSVNSCPALSHTQASAFSGETLAVLTAGISKRWPKYRLPIDIARPCSET
Sbjct: 117 GILLRLPTTRIHSVNSCPALSHTQASAFSGETLAVLTAGISKRWPKYRLPIDIARPCSET 176
Query: 106 PFPRL 110
PFPRL
Sbjct: 177 PFPRL 181
Score = 93.6 bits (231), Expect = 3e-20
Identities = 45/45 (100%), Positives = 45/45 (100%)
Query: 1 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTG 45
MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTG
Sbjct: 1 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTG 45
>gi|145701015 zinc finger protein 655 isoform f [Homo sapiens]
Length = 526
Score = 97.1 bits (240), Expect = 3e-21
Identities = 47/52 (90%), Positives = 48/52 (92%)
Query: 1 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTGGILLRLP 52
MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTGG + P
Sbjct: 1 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTGGFPISKP 52
>gi|145701021 zinc finger protein 655 isoform f [Homo sapiens]
Length = 526
Score = 97.1 bits (240), Expect = 3e-21
Identities = 47/52 (90%), Positives = 48/52 (92%)
Query: 1 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTGGILLRLP 52
MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTGG + P
Sbjct: 1 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTGGFPISKP 52
>gi|28416427 zinc finger protein 655 isoform a [Homo sapiens]
Length = 491
Score = 93.6 bits (231), Expect = 3e-20
Identities = 45/45 (100%), Positives = 45/45 (100%)
Query: 1 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTG 45
MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTG
Sbjct: 1 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTG 45
>gi|58331264 zinc finger protein 655 isoform a [Homo sapiens]
Length = 491
Score = 93.6 bits (231), Expect = 3e-20
Identities = 45/45 (100%), Positives = 45/45 (100%)
Query: 1 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTG 45
MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTG
Sbjct: 1 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTG 45
>gi|46195755 SCAN domain containing 3 [Homo sapiens]
Length = 1325
Score = 34.3 bits (77), Expect = 0.022
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 2 EEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTD-------MEQGLTGGILLRLPT 53
E IP A S Q QS+E + EC SPEP +QD M Q + G L L T
Sbjct: 154 EMIPLDSAKESLGTQLQSMEDRMECESPEPHPLQDNGSFLWFSMMSQSMGGDNLSSLDT 212
>gi|28558973 mediator complex subunit 14 [Homo sapiens]
Length = 1454
Score = 29.3 bits (64), Expect = 0.71
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 27 LSPEPQFVQDTDMEQGLTGGILLRLPTTRIHS-VNSCPALSHTQA 70
L P PQ Q + G +G L P T HS VN P++ HTQ+
Sbjct: 1000 LQPPPQ-QQPFPKQPGTSGAYPLTSPPTSYHSTVNQSPSMMHTQS 1043
>gi|208431781 cyclic nucleotide gated channel beta 1 isoform b
[Homo sapiens]
Length = 299
Score = 28.9 bits (63), Expect = 0.93
Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 10/71 (14%)
Query: 1 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQD----------TDMEQGLTGGILLR 50
+E P EA P + ET+SE + PE F ++ E LT I LR
Sbjct: 27 VEPEPEMEAEVEPEPNPEEAETESESMPPEESFKEEEVAVADPSPQETKEAALTSTISLR 86
Query: 51 LPTTRIHSVNS 61
I +NS
Sbjct: 87 AQGAEISEMNS 97
>gi|114205399 cyclic nucleotide gated channel beta 1 isoform a
[Homo sapiens]
Length = 1251
Score = 28.9 bits (63), Expect = 0.93
Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 10/71 (14%)
Query: 1 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQD----------TDMEQGLTGGILLR 50
+E P EA P + ET+SE + PE F ++ E LT I LR
Sbjct: 27 VEPEPEMEAEVEPEPNPEEAETESESMPPEESFKEEEVAVADPSPQETKEAALTSTISLR 86
Query: 51 LPTTRIHSVNS 61
I +NS
Sbjct: 87 AQGAEISEMNS 97
>gi|157266300 membrane alanine aminopeptidase precursor [Homo
sapiens]
Length = 967
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 58 SVNSCPALSHTQASAFSGETLAVLTAGISKRWPKYRLP 95
+ NS P S T +++ + + T SK W +YRLP
Sbjct: 40 NANSSPVASTTPSASATTNPASATTLDQSKAWNRYRLP 77
>gi|11545918 tubulointerstitial nephritis antigen-like 1 [Homo
sapiens]
Length = 467
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 9 AAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTGGIL 48
A S RV SL + LSP+ DT +QG GG L
Sbjct: 236 AVASDRVSIHSLGHMTPVLSPQNLLSCDTHQQQGCRGGRL 275
>gi|31543179 hypothetical protein LOC78995 [Homo sapiens]
Length = 647
Score = 27.3 bits (59), Expect = 2.7
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 11/71 (15%)
Query: 4 IPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTGGI----LLRLPTTRIHSV 59
+PA AG Q +SL+ +C +P P + G G + L +PT ++H
Sbjct: 214 VPAIHKAGIMSAQDESLDPVIQCRTPRP------PLRPGAVGHLPVPTALTVPTQQLH-W 266
Query: 60 NSCPALSHTQA 70
CP S QA
Sbjct: 267 EVCPQRSPVQA 277
>gi|17158025 RNA pseudouridylate synthase domain containing 1 [Homo
sapiens]
Length = 312
Score = 27.3 bits (59), Expect = 2.7
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Query: 14 RVQFQSLETQSECLSPEPQFVQDTDMEQGLTGG-----ILLRLPTTRIHSVN-SCPALSH 67
R +E C +P+P +E GL G +LL+ T R H + C AL H
Sbjct: 126 RAHTMCIEGSQGCENPKPSLTDLVVLEHGLYAGDPVSKVLLKPLTGRTHQLRVHCSALGH 185
>gi|16933542 fibronectin 1 isoform 3 preproprotein [Homo sapiens]
Length = 2355
Score = 26.6 bits (57), Expect = 4.6
Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 4/80 (5%)
Query: 14 RVQFQSLETQSECLSPEPQFVQDTDMEQGLTGGILLRLPTTRIHSVNSCPALSHTQASAF 73
RV + S E L P P +DT QGL G + +H L TQ++A
Sbjct: 1663 RVTYSSPEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVVALHDDMESQPLIGTQSTAI 1722
Query: 74 SGET----LAVLTAGISKRW 89
T V +S +W
Sbjct: 1723 PAPTDLKFTQVTPTSLSAQW 1742
>gi|47132557 fibronectin 1 isoform 1 preproprotein [Homo sapiens]
Length = 2477
Score = 26.6 bits (57), Expect = 4.6
Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 4/80 (5%)
Query: 14 RVQFQSLETQSECLSPEPQFVQDTDMEQGLTGGILLRLPTTRIHSVNSCPALSHTQASAF 73
RV + S E L P P +DT QGL G + +H L TQ++A
Sbjct: 1754 RVTYSSPEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVVALHDDMESQPLIGTQSTAI 1813
Query: 74 SGET----LAVLTAGISKRW 89
T V +S +W
Sbjct: 1814 PAPTDLKFTQVTPTSLSAQW 1833
>gi|47132555 fibronectin 1 isoform 4 preproprotein [Homo sapiens]
Length = 2330
Score = 26.6 bits (57), Expect = 4.6
Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 4/80 (5%)
Query: 14 RVQFQSLETQSECLSPEPQFVQDTDMEQGLTGGILLRLPTTRIHSVNSCPALSHTQASAF 73
RV + S E L P P +DT QGL G + +H L TQ++A
Sbjct: 1663 RVTYSSPEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVVALHDDMESQPLIGTQSTAI 1722
Query: 74 SGET----LAVLTAGISKRW 89
T V +S +W
Sbjct: 1723 PAPTDLKFTQVTPTSLSAQW 1742
>gi|47132551 fibronectin 1 isoform 2 preproprotein [Homo sapiens]
Length = 2421
Score = 26.6 bits (57), Expect = 4.6
Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 4/80 (5%)
Query: 14 RVQFQSLETQSECLSPEPQFVQDTDMEQGLTGGILLRLPTTRIHSVNSCPALSHTQASAF 73
RV + S E L P P +DT QGL G + +H L TQ++A
Sbjct: 1754 RVTYSSPEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVVALHDDMESQPLIGTQSTAI 1813
Query: 74 SGET----LAVLTAGISKRW 89
T V +S +W
Sbjct: 1814 PAPTDLKFTQVTPTSLSAQW 1833
>gi|91992162 mutL homolog 3 isoform 1 [Homo sapiens]
Length = 1453
Score = 26.6 bits (57), Expect = 4.6
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 3 EIPAQEAAGSPRVQFQSLETQSECLS---PEPQFVQDTDMEQGLTGGILLRLPTTR 55
++P + PR++F+ + + E LS P F + ++G ++L+LP T+
Sbjct: 154 QLPVRRKCMDPRLEFEKVRQRIEALSLMHPSISF----SLRNDVSGSMVLQLPKTK 205
>gi|91992160 mutL homolog 3 isoform 2 [Homo sapiens]
Length = 1429
Score = 26.6 bits (57), Expect = 4.6
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 3 EIPAQEAAGSPRVQFQSLETQSECLS---PEPQFVQDTDMEQGLTGGILLRLPTTR 55
++P + PR++F+ + + E LS P F + ++G ++L+LP T+
Sbjct: 154 QLPVRRKCMDPRLEFEKVRQRIEALSLMHPSISF----SLRNDVSGSMVLQLPKTK 205
>gi|239746628 PREDICTED: hypothetical protein XP_002344230 [Homo
sapiens]
Length = 227
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 63 PALSHTQASAFSGETLAVLTAGISKRWPKYRLPI 96
PA+SH A G LA+L G +R K+R +
Sbjct: 91 PAVSHGDGLAGVGRELALLLGGPEQRGAKHRAKV 124
>gi|239744133 PREDICTED: hypothetical protein [Homo sapiens]
Length = 375
Score = 25.8 bits (55), Expect = 7.8
Identities = 21/73 (28%), Positives = 26/73 (35%), Gaps = 2/73 (2%)
Query: 7 QEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTGGILLRLPTTRIHSVNSCPA-- 64
Q A S QS +T S C Q + T ++RI S SC +
Sbjct: 10 QHRASSSSCSCQSSQTSSTCSCQSSQTSSTCSCQSSGTSSTSCNWQSSRISSTCSCQSSG 69
Query: 65 LSHTQASAFSGET 77
S T S S ET
Sbjct: 70 TSSTSCSCQSSET 82
>gi|167614488 TBC1 domain family, member 10B [Homo sapiens]
Length = 808
Score = 25.8 bits (55), Expect = 7.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 63 PALSHTQASAFSGETLAVLTAGISKRWPKYRLP 95
PA + A A +G T+ VLT S PK +LP
Sbjct: 74 PAPAPAPAPAVTGSTVVVLTLEASPEAPKPQLP 106
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.131 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,615,636
Number of Sequences: 37866
Number of extensions: 191883
Number of successful extensions: 418
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 396
Number of HSP's gapped (non-prelim): 28
length of query: 110
length of database: 18,247,518
effective HSP length: 80
effective length of query: 30
effective length of database: 15,218,238
effective search space: 456547140
effective search space used: 456547140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.