BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|58331262 zinc finger protein 655 isoform c [Homo sapiens] (110 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|145701017 zinc finger protein 655 isoform c [Homo sapiens] 224 1e-59 gi|58331262 zinc finger protein 655 isoform c [Homo sapiens] 224 1e-59 gi|145701019 zinc finger protein 655 isoform b [Homo sapiens] 135 7e-33 gi|13129036 zinc finger protein 655 isoform b [Homo sapiens] 135 7e-33 gi|145701015 zinc finger protein 655 isoform f [Homo sapiens] 97 3e-21 gi|145701021 zinc finger protein 655 isoform f [Homo sapiens] 97 3e-21 gi|28416427 zinc finger protein 655 isoform a [Homo sapiens] 94 3e-20 gi|58331264 zinc finger protein 655 isoform a [Homo sapiens] 94 3e-20 gi|46195755 SCAN domain containing 3 [Homo sapiens] 34 0.022 gi|28558973 mediator complex subunit 14 [Homo sapiens] 29 0.71 gi|208431781 cyclic nucleotide gated channel beta 1 isoform b [H... 29 0.93 gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [H... 29 0.93 gi|157266300 membrane alanine aminopeptidase precursor [Homo sap... 28 1.2 gi|11545918 tubulointerstitial nephritis antigen-like 1 [Homo sa... 28 1.6 gi|31543179 hypothetical protein LOC78995 [Homo sapiens] 27 2.7 gi|17158025 RNA pseudouridylate synthase domain containing 1 [Ho... 27 2.7 gi|16933542 fibronectin 1 isoform 3 preproprotein [Homo sapiens] 27 4.6 gi|47132557 fibronectin 1 isoform 1 preproprotein [Homo sapiens] 27 4.6 gi|47132555 fibronectin 1 isoform 4 preproprotein [Homo sapiens] 27 4.6 gi|47132551 fibronectin 1 isoform 2 preproprotein [Homo sapiens] 27 4.6 gi|91992162 mutL homolog 3 isoform 1 [Homo sapiens] 27 4.6 gi|91992160 mutL homolog 3 isoform 2 [Homo sapiens] 27 4.6 gi|239746628 PREDICTED: hypothetical protein XP_002344230 [Homo ... 26 7.8 gi|239744133 PREDICTED: hypothetical protein [Homo sapiens] 26 7.8 gi|167614488 TBC1 domain family, member 10B [Homo sapiens] 26 7.8 >gi|145701017 zinc finger protein 655 isoform c [Homo sapiens] Length = 110 Score = 224 bits (571), Expect = 1e-59 Identities = 110/110 (100%), Positives = 110/110 (100%) Query: 1 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTGGILLRLPTTRIHSVN 60 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTGGILLRLPTTRIHSVN Sbjct: 1 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTGGILLRLPTTRIHSVN 60 Query: 61 SCPALSHTQASAFSGETLAVLTAGISKRWPKYRLPIDIARPCSETPFPRL 110 SCPALSHTQASAFSGETLAVLTAGISKRWPKYRLPIDIARPCSETPFPRL Sbjct: 61 SCPALSHTQASAFSGETLAVLTAGISKRWPKYRLPIDIARPCSETPFPRL 110 >gi|58331262 zinc finger protein 655 isoform c [Homo sapiens] Length = 110 Score = 224 bits (571), Expect = 1e-59 Identities = 110/110 (100%), Positives = 110/110 (100%) Query: 1 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTGGILLRLPTTRIHSVN 60 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTGGILLRLPTTRIHSVN Sbjct: 1 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTGGILLRLPTTRIHSVN 60 Query: 61 SCPALSHTQASAFSGETLAVLTAGISKRWPKYRLPIDIARPCSETPFPRL 110 SCPALSHTQASAFSGETLAVLTAGISKRWPKYRLPIDIARPCSETPFPRL Sbjct: 61 SCPALSHTQASAFSGETLAVLTAGISKRWPKYRLPIDIARPCSETPFPRL 110 >gi|145701019 zinc finger protein 655 isoform b [Homo sapiens] Length = 181 Score = 135 bits (340), Expect = 7e-33 Identities = 65/65 (100%), Positives = 65/65 (100%) Query: 46 GILLRLPTTRIHSVNSCPALSHTQASAFSGETLAVLTAGISKRWPKYRLPIDIARPCSET 105 GILLRLPTTRIHSVNSCPALSHTQASAFSGETLAVLTAGISKRWPKYRLPIDIARPCSET Sbjct: 117 GILLRLPTTRIHSVNSCPALSHTQASAFSGETLAVLTAGISKRWPKYRLPIDIARPCSET 176 Query: 106 PFPRL 110 PFPRL Sbjct: 177 PFPRL 181 Score = 93.6 bits (231), Expect = 3e-20 Identities = 45/45 (100%), Positives = 45/45 (100%) Query: 1 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTG 45 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTG Sbjct: 1 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTG 45 >gi|13129036 zinc finger protein 655 isoform b [Homo sapiens] Length = 181 Score = 135 bits (340), Expect = 7e-33 Identities = 65/65 (100%), Positives = 65/65 (100%) Query: 46 GILLRLPTTRIHSVNSCPALSHTQASAFSGETLAVLTAGISKRWPKYRLPIDIARPCSET 105 GILLRLPTTRIHSVNSCPALSHTQASAFSGETLAVLTAGISKRWPKYRLPIDIARPCSET Sbjct: 117 GILLRLPTTRIHSVNSCPALSHTQASAFSGETLAVLTAGISKRWPKYRLPIDIARPCSET 176 Query: 106 PFPRL 110 PFPRL Sbjct: 177 PFPRL 181 Score = 93.6 bits (231), Expect = 3e-20 Identities = 45/45 (100%), Positives = 45/45 (100%) Query: 1 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTG 45 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTG Sbjct: 1 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTG 45 >gi|145701015 zinc finger protein 655 isoform f [Homo sapiens] Length = 526 Score = 97.1 bits (240), Expect = 3e-21 Identities = 47/52 (90%), Positives = 48/52 (92%) Query: 1 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTGGILLRLP 52 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTGG + P Sbjct: 1 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTGGFPISKP 52 >gi|145701021 zinc finger protein 655 isoform f [Homo sapiens] Length = 526 Score = 97.1 bits (240), Expect = 3e-21 Identities = 47/52 (90%), Positives = 48/52 (92%) Query: 1 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTGGILLRLP 52 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTGG + P Sbjct: 1 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTGGFPISKP 52 >gi|28416427 zinc finger protein 655 isoform a [Homo sapiens] Length = 491 Score = 93.6 bits (231), Expect = 3e-20 Identities = 45/45 (100%), Positives = 45/45 (100%) Query: 1 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTG 45 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTG Sbjct: 1 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTG 45 >gi|58331264 zinc finger protein 655 isoform a [Homo sapiens] Length = 491 Score = 93.6 bits (231), Expect = 3e-20 Identities = 45/45 (100%), Positives = 45/45 (100%) Query: 1 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTG 45 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTG Sbjct: 1 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTG 45 >gi|46195755 SCAN domain containing 3 [Homo sapiens] Length = 1325 Score = 34.3 bits (77), Expect = 0.022 Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 7/59 (11%) Query: 2 EEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTD-------MEQGLTGGILLRLPT 53 E IP A S Q QS+E + EC SPEP +QD M Q + G L L T Sbjct: 154 EMIPLDSAKESLGTQLQSMEDRMECESPEPHPLQDNGSFLWFSMMSQSMGGDNLSSLDT 212 >gi|28558973 mediator complex subunit 14 [Homo sapiens] Length = 1454 Score = 29.3 bits (64), Expect = 0.71 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%) Query: 27 LSPEPQFVQDTDMEQGLTGGILLRLPTTRIHS-VNSCPALSHTQA 70 L P PQ Q + G +G L P T HS VN P++ HTQ+ Sbjct: 1000 LQPPPQ-QQPFPKQPGTSGAYPLTSPPTSYHSTVNQSPSMMHTQS 1043 >gi|208431781 cyclic nucleotide gated channel beta 1 isoform b [Homo sapiens] Length = 299 Score = 28.9 bits (63), Expect = 0.93 Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 10/71 (14%) Query: 1 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQD----------TDMEQGLTGGILLR 50 +E P EA P + ET+SE + PE F ++ E LT I LR Sbjct: 27 VEPEPEMEAEVEPEPNPEEAETESESMPPEESFKEEEVAVADPSPQETKEAALTSTISLR 86 Query: 51 LPTTRIHSVNS 61 I +NS Sbjct: 87 AQGAEISEMNS 97 >gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [Homo sapiens] Length = 1251 Score = 28.9 bits (63), Expect = 0.93 Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 10/71 (14%) Query: 1 MEEIPAQEAAGSPRVQFQSLETQSECLSPEPQFVQD----------TDMEQGLTGGILLR 50 +E P EA P + ET+SE + PE F ++ E LT I LR Sbjct: 27 VEPEPEMEAEVEPEPNPEEAETESESMPPEESFKEEEVAVADPSPQETKEAALTSTISLR 86 Query: 51 LPTTRIHSVNS 61 I +NS Sbjct: 87 AQGAEISEMNS 97 >gi|157266300 membrane alanine aminopeptidase precursor [Homo sapiens] Length = 967 Score = 28.5 bits (62), Expect = 1.2 Identities = 13/38 (34%), Positives = 20/38 (52%) Query: 58 SVNSCPALSHTQASAFSGETLAVLTAGISKRWPKYRLP 95 + NS P S T +++ + + T SK W +YRLP Sbjct: 40 NANSSPVASTTPSASATTNPASATTLDQSKAWNRYRLP 77 >gi|11545918 tubulointerstitial nephritis antigen-like 1 [Homo sapiens] Length = 467 Score = 28.1 bits (61), Expect = 1.6 Identities = 16/40 (40%), Positives = 19/40 (47%) Query: 9 AAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTGGIL 48 A S RV SL + LSP+ DT +QG GG L Sbjct: 236 AVASDRVSIHSLGHMTPVLSPQNLLSCDTHQQQGCRGGRL 275 >gi|31543179 hypothetical protein LOC78995 [Homo sapiens] Length = 647 Score = 27.3 bits (59), Expect = 2.7 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 11/71 (15%) Query: 4 IPAQEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTGGI----LLRLPTTRIHSV 59 +PA AG Q +SL+ +C +P P + G G + L +PT ++H Sbjct: 214 VPAIHKAGIMSAQDESLDPVIQCRTPRP------PLRPGAVGHLPVPTALTVPTQQLH-W 266 Query: 60 NSCPALSHTQA 70 CP S QA Sbjct: 267 EVCPQRSPVQA 277 >gi|17158025 RNA pseudouridylate synthase domain containing 1 [Homo sapiens] Length = 312 Score = 27.3 bits (59), Expect = 2.7 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 6/60 (10%) Query: 14 RVQFQSLETQSECLSPEPQFVQDTDMEQGLTGG-----ILLRLPTTRIHSVN-SCPALSH 67 R +E C +P+P +E GL G +LL+ T R H + C AL H Sbjct: 126 RAHTMCIEGSQGCENPKPSLTDLVVLEHGLYAGDPVSKVLLKPLTGRTHQLRVHCSALGH 185 >gi|16933542 fibronectin 1 isoform 3 preproprotein [Homo sapiens] Length = 2355 Score = 26.6 bits (57), Expect = 4.6 Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 4/80 (5%) Query: 14 RVQFQSLETQSECLSPEPQFVQDTDMEQGLTGGILLRLPTTRIHSVNSCPALSHTQASAF 73 RV + S E L P P +DT QGL G + +H L TQ++A Sbjct: 1663 RVTYSSPEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVVALHDDMESQPLIGTQSTAI 1722 Query: 74 SGET----LAVLTAGISKRW 89 T V +S +W Sbjct: 1723 PAPTDLKFTQVTPTSLSAQW 1742 >gi|47132557 fibronectin 1 isoform 1 preproprotein [Homo sapiens] Length = 2477 Score = 26.6 bits (57), Expect = 4.6 Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 4/80 (5%) Query: 14 RVQFQSLETQSECLSPEPQFVQDTDMEQGLTGGILLRLPTTRIHSVNSCPALSHTQASAF 73 RV + S E L P P +DT QGL G + +H L TQ++A Sbjct: 1754 RVTYSSPEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVVALHDDMESQPLIGTQSTAI 1813 Query: 74 SGET----LAVLTAGISKRW 89 T V +S +W Sbjct: 1814 PAPTDLKFTQVTPTSLSAQW 1833 >gi|47132555 fibronectin 1 isoform 4 preproprotein [Homo sapiens] Length = 2330 Score = 26.6 bits (57), Expect = 4.6 Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 4/80 (5%) Query: 14 RVQFQSLETQSECLSPEPQFVQDTDMEQGLTGGILLRLPTTRIHSVNSCPALSHTQASAF 73 RV + S E L P P +DT QGL G + +H L TQ++A Sbjct: 1663 RVTYSSPEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVVALHDDMESQPLIGTQSTAI 1722 Query: 74 SGET----LAVLTAGISKRW 89 T V +S +W Sbjct: 1723 PAPTDLKFTQVTPTSLSAQW 1742 >gi|47132551 fibronectin 1 isoform 2 preproprotein [Homo sapiens] Length = 2421 Score = 26.6 bits (57), Expect = 4.6 Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 4/80 (5%) Query: 14 RVQFQSLETQSECLSPEPQFVQDTDMEQGLTGGILLRLPTTRIHSVNSCPALSHTQASAF 73 RV + S E L P P +DT QGL G + +H L TQ++A Sbjct: 1754 RVTYSSPEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVVALHDDMESQPLIGTQSTAI 1813 Query: 74 SGET----LAVLTAGISKRW 89 T V +S +W Sbjct: 1814 PAPTDLKFTQVTPTSLSAQW 1833 >gi|91992162 mutL homolog 3 isoform 1 [Homo sapiens] Length = 1453 Score = 26.6 bits (57), Expect = 4.6 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 7/56 (12%) Query: 3 EIPAQEAAGSPRVQFQSLETQSECLS---PEPQFVQDTDMEQGLTGGILLRLPTTR 55 ++P + PR++F+ + + E LS P F + ++G ++L+LP T+ Sbjct: 154 QLPVRRKCMDPRLEFEKVRQRIEALSLMHPSISF----SLRNDVSGSMVLQLPKTK 205 >gi|91992160 mutL homolog 3 isoform 2 [Homo sapiens] Length = 1429 Score = 26.6 bits (57), Expect = 4.6 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 7/56 (12%) Query: 3 EIPAQEAAGSPRVQFQSLETQSECLS---PEPQFVQDTDMEQGLTGGILLRLPTTR 55 ++P + PR++F+ + + E LS P F + ++G ++L+LP T+ Sbjct: 154 QLPVRRKCMDPRLEFEKVRQRIEALSLMHPSISF----SLRNDVSGSMVLQLPKTK 205 >gi|239746628 PREDICTED: hypothetical protein XP_002344230 [Homo sapiens] Length = 227 Score = 25.8 bits (55), Expect = 7.8 Identities = 13/34 (38%), Positives = 18/34 (52%) Query: 63 PALSHTQASAFSGETLAVLTAGISKRWPKYRLPI 96 PA+SH A G LA+L G +R K+R + Sbjct: 91 PAVSHGDGLAGVGRELALLLGGPEQRGAKHRAKV 124 >gi|239744133 PREDICTED: hypothetical protein [Homo sapiens] Length = 375 Score = 25.8 bits (55), Expect = 7.8 Identities = 21/73 (28%), Positives = 26/73 (35%), Gaps = 2/73 (2%) Query: 7 QEAAGSPRVQFQSLETQSECLSPEPQFVQDTDMEQGLTGGILLRLPTTRIHSVNSCPA-- 64 Q A S QS +T S C Q + T ++RI S SC + Sbjct: 10 QHRASSSSCSCQSSQTSSTCSCQSSQTSSTCSCQSSGTSSTSCNWQSSRISSTCSCQSSG 69 Query: 65 LSHTQASAFSGET 77 S T S S ET Sbjct: 70 TSSTSCSCQSSET 82 >gi|167614488 TBC1 domain family, member 10B [Homo sapiens] Length = 808 Score = 25.8 bits (55), Expect = 7.8 Identities = 14/33 (42%), Positives = 18/33 (54%) Query: 63 PALSHTQASAFSGETLAVLTAGISKRWPKYRLP 95 PA + A A +G T+ VLT S PK +LP Sbjct: 74 PAPAPAPAPAVTGSTVVVLTLEASPEAPKPQLP 106 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.316 0.131 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,615,636 Number of Sequences: 37866 Number of extensions: 191883 Number of successful extensions: 418 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 396 Number of HSP's gapped (non-prelim): 28 length of query: 110 length of database: 18,247,518 effective HSP length: 80 effective length of query: 30 effective length of database: 15,218,238 effective search space: 456547140 effective search space used: 456547140 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.