Search of human proteins with 5730087

Search of human proteins with 5730087

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|5730087 dynein, light chain, Tctex-type 3 [Homo sapiens]
         (116 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|5730087 dynein, light chain, Tctex-type 3 [Homo sapiens]           249   4e-67
gi|5730085 dynein, light chain, Tctex-type 1 [Homo sapiens]           147   2e-36
gi|239753813 PREDICTED: similar to dynein, light chain, Tctex-ty...   118   1e-27
gi|239748376 PREDICTED: hypothetical protein XP_002346645 [Homo ...   118   1e-27
gi|239742301 PREDICTED: hypothetical protein XP_002342481 [Homo ...   118   1e-27
gi|229090471 Tctex1 domain containing 2 [Homo sapiens]                 45   1e-05
gi|239735600 Tctex1 domain containing 1 [Homo sapiens]                 39   0.001
gi|28372535 t-complex-associated-testis-expressed 3 [Homo sapiens]     34   0.022
gi|61966721 Tctex1 domain containing 4 [Homo sapiens]                  34   0.028
gi|169160677 PREDICTED: similar to Tctex1 domain containing 4 [H...    33   0.048
gi|4504379 leucine-rich repeat-containing G protein-coupled rece...    29   0.91 
gi|13027640 aminoadipate-semialdehyde synthase [Homo sapiens]          27   2.7  
gi|118918407 spectrin repeat containing, nuclear envelope 2 isof...    27   3.5  
gi|118918403 spectrin repeat containing, nuclear envelope 2 isof...    27   3.5  
gi|104294888 fms-related tyrosine kinase 4 isoform 1 precursor [...    26   5.9  
gi|103472027 fms-related tyrosine kinase 4 isoform 2 precursor [...    26   5.9  

>gi|5730087 dynein, light chain, Tctex-type 3 [Homo sapiens]
          Length = 116

 Score =  249 bits (635), Expect = 4e-67
 Identities = 116/116 (100%), Positives = 116/116 (100%)

Query: 1   MEEYHRHCDEVGFNAEEAHNIVKECVDGVLGGEDYNHNNINQWTASIVEQSLTHLVKLGK 60
           MEEYHRHCDEVGFNAEEAHNIVKECVDGVLGGEDYNHNNINQWTASIVEQSLTHLVKLGK
Sbjct: 1   MEEYHRHCDEVGFNAEEAHNIVKECVDGVLGGEDYNHNNINQWTASIVEQSLTHLVKLGK 60

Query: 61  AYKYIVTCAVVQKSAYGFHTASSCFWDTTSDGTCTVRWENRTMNCIVNVFAIAIVL 116
           AYKYIVTCAVVQKSAYGFHTASSCFWDTTSDGTCTVRWENRTMNCIVNVFAIAIVL
Sbjct: 61  AYKYIVTCAVVQKSAYGFHTASSCFWDTTSDGTCTVRWENRTMNCIVNVFAIAIVL 116


>gi|5730085 dynein, light chain, Tctex-type 1 [Homo sapiens]
          Length = 113

 Score =  147 bits (371), Expect = 2e-36
 Identities = 62/114 (54%), Positives = 86/114 (75%), Gaps = 1/114 (0%)

Query: 1   MEEYHRHCDEVGFNAEEAHNIVKECVDGVLGGEDYNHNNINQWTASIVEQSLTHLVKLGK 60
           ME+Y    +E  F  +E  NIVKE ++  +GG  Y H+ +NQWT ++VEQ+L+ L KLGK
Sbjct: 1   MEDYQA-AEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGK 59

Query: 61  AYKYIVTCAVVQKSAYGFHTASSCFWDTTSDGTCTVRWENRTMNCIVNVFAIAI 114
            +KYIVTC ++QK+  G HTASSCFWD+++DG+CTVRWEN+TM CIV+ F ++I
Sbjct: 60  PFKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAFGLSI 113


>gi|239753813 PREDICTED: similar to dynein, light chain, Tctex-type
           1 [Homo sapiens]
          Length = 116

 Score =  118 bits (295), Expect = 1e-27
 Identities = 54/103 (52%), Positives = 74/103 (71%), Gaps = 6/103 (5%)

Query: 17  EAHNIVKECVDGVLG-----GEDYNHNNINQWTASIVEQSLTHLVKLGKAYKYIVTCAVV 71
           E  N VKE ++ V+G     G  Y H+ +NQWT + VEQ+L+ L KLGK +KYIVTC ++
Sbjct: 15  EVSNTVKEAIESVIGAGRVGGNAYQHSKVNQWTTN-VEQTLSQLPKLGKPFKYIVTCVII 73

Query: 72  QKSAYGFHTASSCFWDTTSDGTCTVRWENRTMNCIVNVFAIAI 114
           QK+  G + ASSCFWD+++DG+ TVRWEN+TM CIV  F ++I
Sbjct: 74  QKNGAGSYMASSCFWDSSTDGSYTVRWENKTMYCIVGAFGLSI 116


>gi|239748376 PREDICTED: hypothetical protein XP_002346645 [Homo
           sapiens]
          Length = 116

 Score =  118 bits (295), Expect = 1e-27
 Identities = 54/103 (52%), Positives = 74/103 (71%), Gaps = 6/103 (5%)

Query: 17  EAHNIVKECVDGVLG-----GEDYNHNNINQWTASIVEQSLTHLVKLGKAYKYIVTCAVV 71
           E  N VKE ++ V+G     G  Y H+ +NQWT + VEQ+L+ L KLGK +KYIVTC ++
Sbjct: 15  EVSNTVKEAIESVIGAGRVGGNAYQHSKVNQWTTN-VEQTLSQLPKLGKPFKYIVTCVII 73

Query: 72  QKSAYGFHTASSCFWDTTSDGTCTVRWENRTMNCIVNVFAIAI 114
           QK+  G + ASSCFWD+++DG+ TVRWEN+TM CIV  F ++I
Sbjct: 74  QKNGAGSYMASSCFWDSSTDGSYTVRWENKTMYCIVGAFGLSI 116


>gi|239742301 PREDICTED: hypothetical protein XP_002342481 [Homo
           sapiens]
          Length = 116

 Score =  118 bits (295), Expect = 1e-27
 Identities = 54/103 (52%), Positives = 74/103 (71%), Gaps = 6/103 (5%)

Query: 17  EAHNIVKECVDGVLG-----GEDYNHNNINQWTASIVEQSLTHLVKLGKAYKYIVTCAVV 71
           E  N VKE ++ V+G     G  Y H+ +NQWT + VEQ+L+ L KLGK +KYIVTC ++
Sbjct: 15  EVSNTVKEAIESVIGAGRVGGNAYQHSKVNQWTTN-VEQTLSQLPKLGKPFKYIVTCVII 73

Query: 72  QKSAYGFHTASSCFWDTTSDGTCTVRWENRTMNCIVNVFAIAI 114
           QK+  G + ASSCFWD+++DG+ TVRWEN+TM CIV  F ++I
Sbjct: 74  QKNGAGSYMASSCFWDSSTDGSYTVRWENKTMYCIVGAFGLSI 116


>gi|229090471 Tctex1 domain containing 2 [Homo sapiens]
          Length = 142

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 5/96 (5%)

Query: 20  NIVKECVDGVLGGE----DYNHNNINQWTASIVEQSLTHLVKLG-KAYKYIVTCAVVQKS 74
           ++VK+C+  VL  E    +Y+   + Q T  + E     L ++G   YK +V   + ++ 
Sbjct: 42  SVVKDCIHAVLKEELANAEYSPEEMPQLTKHLSENIKDKLKEMGFDRYKMVVQVVIGEQR 101

Query: 75  AYGFHTASSCFWDTTSDGTCTVRWENRTMNCIVNVF 110
             G   AS CFWD  +D      + N ++ C+V  F
Sbjct: 102 GEGVFMASRCFWDADTDNYTHDVFMNDSLFCVVAAF 137


>gi|239735600 Tctex1 domain containing 1 [Homo sapiens]
          Length = 179

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 1/101 (0%)

Query: 13  FNAEEAHNIVKECVDGVLGGEDYNHNNINQWTASIVEQSLTHLVKLG-KAYKYIVTCAVV 71
           F     ++I+K+ V   L  E+Y      Q T +I E     +  L    YK IV   + 
Sbjct: 76  FPVVTVNHILKDVVTSYLQVEEYEPELCRQMTKTISEVIKAQVKDLMIPRYKLIVIVHIG 135

Query: 72  QKSAYGFHTASSCFWDTTSDGTCTVRWENRTMNCIVNVFAI 112
           Q +       S C WD  SD   +  + N ++  + NV+A+
Sbjct: 136 QLNRQSILIGSRCLWDPKSDTFSSYVFRNSSLFALANVYAV 176


>gi|28372535 t-complex-associated-testis-expressed 3 [Homo sapiens]
          Length = 198

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 1/101 (0%)

Query: 13  FNAEEAHNIVKECVDGVLGGEDYNHNNINQWTASIVEQSLTHLVKLG-KAYKYIVTCAVV 71
           F A      V++ +   L    Y+    +  +  + ++ L  + + G   YK+I+    +
Sbjct: 95  FQAHSVETKVQQILTESLKDVKYDDKVFSHLSLELADRILLAVKEFGYHRYKFIIKVLFI 154

Query: 72  QKSAYGFHTASSCFWDTTSDGTCTVRWENRTMNCIVNVFAI 112
           QK+    + AS   WD   D     + E  +   +V VFA+
Sbjct: 155 QKTGQAINIASRWIWDIAWDSWVAAKHEAESYVALVLVFAL 195


>gi|61966721 Tctex1 domain containing 4 [Homo sapiens]
          Length = 221

 Score = 33.9 bits (76), Expect = 0.028
 Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 3/102 (2%)

Query: 13  FNAEEAHNIVKECVDGVLGGEDYNHNNINQWTASIVEQSLTHLVKLGKAYKYIVTCAVV- 71
           + A  A   ++  +   L    Y+ +   +    + EQ    L +L    +Y + C+VV 
Sbjct: 118 WEAARAQRALEAALAAGLHDACYSSDEAARLVRELCEQVHVRLRELSPP-RYKLVCSVVL 176

Query: 72  -QKSAYGFHTASSCFWDTTSDGTCTVRWENRTMNCIVNVFAI 112
             ++  G H  S   WD   DG  +V + N ++  +  V  +
Sbjct: 177 GPRAGQGVHVVSRALWDVARDGLASVSYTNTSLFAVATVHGL 218


>gi|169160677 PREDICTED: similar to Tctex1 domain containing 4 [Homo
           sapiens]
          Length = 127

 Score = 33.1 bits (74), Expect = 0.048
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 63  KYIVTCAVV--QKSAYGFHTASSCFWDTTSDGTCTVRWENRTMNCIVNVFAI 112
           +Y + C+VV   ++  G H  S   WD   DG  +V + N ++  +  V  +
Sbjct: 73  RYKLVCSVVLGPRAGQGVHVVSRALWDVARDGLASVSYTNTSLFAVATVHGL 124


>gi|4504379 leucine-rich repeat-containing G protein-coupled
           receptor 5 [Homo sapiens]
          Length = 907

 Score = 28.9 bits (63), Expect = 0.91
 Identities = 15/43 (34%), Positives = 30/43 (69%), Gaps = 4/43 (9%)

Query: 19  HNIVKECVDGVLGGE--DYNHNNINQWTASIVEQSLTHLVKLG 59
           H++ K+C DG+   E  D N+NN++++  +I  ++L++L +LG
Sbjct: 223 HSLGKKCFDGLHSLETLDLNYNNLDEFPTAI--RTLSNLKELG 263


>gi|13027640 aminoadipate-semialdehyde synthase [Homo sapiens]
          Length = 926

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 8   CDEVGFNAEEAHNIVKECVDGVLGGED 34
           CD VG +    H+++KE V   LGG++
Sbjct: 765 CDLVGISPSSEHDVLKEAVLKKLGGDN 791


>gi|118918407 spectrin repeat containing, nuclear envelope 2 isoform 5
            [Homo sapiens]
          Length = 6907

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query: 1    MEEYHRHCDEVGFNAEEAHNIVKECVDGVLGGEDYNHN 38
            +EE HR+C EV       H  +  C  G+   ++ + N
Sbjct: 6326 LEELHRYCQEVFGRVSRFHRRLTSCTPGLEDEKEASEN 6363


>gi|118918403 spectrin repeat containing, nuclear envelope 2 isoform 1
            [Homo sapiens]
          Length = 6885

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query: 1    MEEYHRHCDEVGFNAEEAHNIVKECVDGVLGGEDYNHN 38
            +EE HR+C EV       H  +  C  G+   ++ + N
Sbjct: 6326 LEELHRYCQEVFGRVSRFHRRLTSCTPGLEDEKEASEN 6363


>gi|104294888 fms-related tyrosine kinase 4 isoform 1 precursor
           [Homo sapiens]
          Length = 1363

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 58  LGKAYKYIVTCAVVQKSAYGFHTASSC 84
           LG+   Y     VV+ SA+G H  SSC
Sbjct: 847 LGRVLGYGAFGKVVEASAFGIHKGSSC 873


>gi|103472027 fms-related tyrosine kinase 4 isoform 2 precursor
           [Homo sapiens]
          Length = 1298

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 58  LGKAYKYIVTCAVVQKSAYGFHTASSC 84
           LG+   Y     VV+ SA+G H  SSC
Sbjct: 847 LGRVLGYGAFGKVVEASAFGIHKGSSC 873


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.132    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,336,946
Number of Sequences: 37866
Number of extensions: 153928
Number of successful extensions: 309
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 291
Number of HSP's gapped (non-prelim): 16
length of query: 116
length of database: 18,247,518
effective HSP length: 86
effective length of query: 30
effective length of database: 14,991,042
effective search space: 449731260
effective search space used: 449731260
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.